Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0018844

Physical Location & Seq

Genomic Coordinates Reverse (-)

6780403 .. 6782087

Gene Structure 1685 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g12000.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGCAGAATCTAGTGATGAACAGCTTGTTGTCGTTTCTCAGGTACTTGTTGCTGACATTAATATTGGATATGAGGACATTGTTAACACACAGGTTCTTGCTTTCAATGGTACGCCTGTGAAAAATTTAAAAAACCTGGCCACCATGGTGGAGAGTTGTGATGATGAGTACCTAAAGTTTGATCTAGAATACAATCAGATGGTTACCCTACAGACAAAAACAGCCAAAGCTGCAACTTTAGATATCCTTTTGAAGCATTGCATACCTTCAGCCATGTCTGATGATCTTAAGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009507 GO:0009536 GO:0016787 GO:0017171 GO:0019538 GO:0031974 GO:0031981 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_2 Trypsin_2

Protein Analysis

99

Amino Acids

10.81

Weight (kDa)

4.29

Isoelectric Point (pI)

33.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDZ_3	PF17815	2 - 95	2.7e-32	PDZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12000 FvH4_5g37890
rosa_laevigata	RLG00000023839
rosa_multiflora	Rmu_sc0003332.1_g000026
rosa_samantha	Rh2BG406700 Rh6AG089800 Rh6CG250200 Rh7DG071300 Rh7DG324400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	138
AcsI	RAATTY	1 cut(s)	124
AcuI	CTGAAG	1 cut(s)	252
AfaI	GTAC	3 cut(s)	45, 112, 170
AflII	CTTAAG	1 cut(s)	287
AgsI	TTSAA	2 cut(s)	106, 253
AjnI	CCWGG	1 cut(s)	135
AleI	CACNNNNGTG	1 cut(s)	146
AluBI	AGCT	2 cut(s)	25, 230
AluI	AGCT	2 cut(s)	25, 230
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	124
AseI	ATTAAT	1 cut(s)	60
BaeI	ACNNNNGTAYC	2 cut(s)	102, 135
BalI	TGGCCA	1 cut(s)	140
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	1 cut(s)	193
BciT130I	CCWGG	1 cut(s)	137
BfaI	CTAG	2 cut(s)	12, 185
BfmI	CTRYAG	1 cut(s)	209
BfrI	CTTAAG	1 cut(s)	287
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
Bme1390I	CCNGG	1 cut(s)	137
BmrFI	CCNGG	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	144
Bse3DI	GCAATG	1 cut(s)	256
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	144
BseMI	GCAATG	1 cut(s)	256
BseMII	CTCAG	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	217
BshFI	GGCC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	181, 283
Bsp19I	CCATGG	1 cut(s)	144
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	52
BspTI	CTTAAG	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	2 cut(s)	181, 283
BssT1I	CCWWGG	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	137
BstAFI	CTTAAG	1 cut(s)	287
BstDEI	CTNAG	1 cut(s)	39
BstDSI	CCRYGG	1 cut(s)	144
BstEII	GGTNACC	1 cut(s)	202
BstKTI	GATC	2 cut(s)	184, 286
BstMBI	GATC	2 cut(s)	181, 283
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNI	CCWGG	1 cut(s)	137
BstPI	GGTNACC	1 cut(s)	202
BstSCI	CCNGG	1 cut(s)	135
BstSFI	CTRYAG	1 cut(s)	209
BstV1I	GCAGC	1 cut(s)	217
BstXI	CCANNNNNNTGG	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	140
BtgI	CCRYGG	1 cut(s)	144
Csp6I	GTAC	3 cut(s)	44, 111, 169
CviAII	CATG	2 cut(s)	145, 274
CviJI	RGCY	5 cut(s)	25, 140, 224, 230, 272
CviKI_1	RGCY	5 cut(s)	25, 140, 224, 230, 272
CviQI	GTAC	3 cut(s)	44, 111, 169
DdeI	CTNAG	1 cut(s)	39
DpnI	GATC	2 cut(s)	183, 285
DpnII	GATC	2 cut(s)	181, 283
DraI	TTTAAA	1 cut(s)	129
EaeI	YGGCCR	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	144
Eco32I	GATATC	1 cut(s)	244
Eco57I	CTGAAG	1 cut(s)	252
Eco91I	GGTNACC	1 cut(s)	202
EcoO65I	GGTNACC	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	135
EcoRV	GATATC	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	2 cut(s)	148, 277
FaiI	YATR	4 cut(s)	72, 146, 263, 275
FatI	CATG	2 cut(s)	144, 273
Fnu4HI	GCNGC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	2 cut(s)	12, 185
GluI	GCNGC	1 cut(s)	231
HaeIII	GGCC	1 cut(s)	140
Hin1II	CATG	2 cut(s)	148, 277
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	1 cut(s)	8
HpaI	GTTAAC	1 cut(s)	85
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	2 cut(s)	198, 280
Hpy188III	TCNNGA	1 cut(s)	185
Hpy8I	GTNNAC	1 cut(s)	85
HpyAV	CCTTC	1 cut(s)	276
HpyCH4V	TGCA	2 cut(s)	233, 261
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	1 cut(s)	39
Hsp92II	CATG	2 cut(s)	148, 277
KspAI	GTTAAC	1 cut(s)	85
Kzo9I	GATC	2 cut(s)	181, 283
LpnPI	CCDG	5 cut(s)	26, 77, 122, 129, 149
Lsp1109I	GCAGC	1 cut(s)	217
MaeI	CTAG	2 cut(s)	12, 185
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	2 cut(s)	183, 285
MboI	GATC	2 cut(s)	181, 283
MlsI	TGGCCA	1 cut(s)	140
MluCI	AATT	1 cut(s)	124
MluNI	TGGCCA	1 cut(s)	140
MnlI	CCTC	1 cut(s)	67
Mox20I	TGGCCA	1 cut(s)	140
MscI	TGGCCA	1 cut(s)	140
MseI	TTAA	5 cut(s)	60, 84, 128, 288, 295
MslI	CAYNNNNRTG	1 cut(s)	146
Msp20I	TGGCCA	1 cut(s)	140
MspCI	CTTAAG	1 cut(s)	287
MspR9I	CCNGG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	1 cut(s)	230
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	2 cut(s)	181, 283
NlaIII	CATG	2 cut(s)	148, 277
OliI	CACNNNNGTG	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	232
PshBI	ATTAAT	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	135
PspEI	GGTNACC	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	135
RsaI	GTAC	3 cut(s)	45, 112, 170
RsaNI	GTAC	3 cut(s)	44, 111, 169
RseI	CAYNNNNRTG	1 cut(s)	146
SaqAI	TTAA	5 cut(s)	60, 84, 128, 288, 295
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	2 cut(s)	181, 283
ScrFI	CCNGG	1 cut(s)	137
SetI	ASST	7 cut(s)	27, 45, 96, 138, 174, 232, 268
SfcI	CTRYAG	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	146
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	1 cut(s)	124
SspI	AATATT	1 cut(s)	64
SspMI	CTAG	2 cut(s)	12, 185
StyD4I	CCNGG	1 cut(s)	135
StyI	CCWWGG	1 cut(s)	144
TasI	AATT	1 cut(s)	124
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	5 cut(s)	60, 84, 128, 288, 295
Tru9I	TTAA	5 cut(s)	60, 84, 128, 288, 295
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	1 cut(s)	33
Vha464I	CTTAAG	1 cut(s)	287
VspI	ATTAAT	1 cut(s)	60
XapI	RAATTY	1 cut(s)	124
XbaI	TCTAGA	1 cut(s)	184
XspI	CTAG	2 cut(s)	12, 185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.