Rh7DG071300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0018844
Physical Location & Seq
Reverse (-)
5478261 .. 5479834
1574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG071300.1

Sequence Viewer

Length: 465 bp
ATGAAGCCCGACCCAATATACATACATGACGTCAATGACTCCGTCAGACGTCGTGCCATTACACATATAATGAAGGGCAGAATAGGTTTTTCATTTGTCAATAGTTTCCTCTCTCTCTCTCTCTCTCGAAATGGCTCTGCAACTCTGGGATCTCTTTTCCTTCTTCTTTTCGTTGTCATCGATAACCACGCCTCTACACCGCCTTTCACCACCTTCGATTACAGCCCCTCACCTCAACATCCACAACCGCTTCAGCCACCTCGAGGGCCGATCTTCACTGTGCCCAGGCTCTCACGGAGTCCGCCCTGGCCTCAATTCAAGCCCTCCTTCGTGTCGCCAAGGTCACCGGTTGAGCACCCAACAAGCTCTCCAAGATGTAAGACCCTAATTCTGTTTGTTTTCGATTTTGGTTTATTTGTTTTTGTGAATCAGGTGGGCTTGATGTGTTTTACATTAAGGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.37

Weight (kDa)

10.55

Isoelectric Point (pI)

62.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018844)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g12000 FvH4_5g37890
rosa_laevigata RLG00000023839
rosa_multiflora Rmu_sc0003332.1_g000026
rosa_samantha Rh2BG406700 Rh6AG089800 Rh6CG250200 Rh7DG071300 Rh7DG324400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 33, 52
AbsI CCTCGAGG 1 cut(s) 261
AciI CCGC 3 cut(s) 200, 248, 302
AclWI GGATC 1 cut(s) 157
AcuI CTGAAG 1 cut(s) 236
AcyI GRCGYC 2 cut(s) 30, 49
AfiI CCNNNNNNNGG 1 cut(s) 263
AgeI ACCGGT 1 cut(s) 346
AgsI TTSAA 1 cut(s) 319
AjnI CCWGG 2 cut(s) 284, 305
AluBI AGCT 1 cut(s) 366
AluI AGCT 1 cut(s) 366
Alw21I GWGCWC 1 cut(s) 357
AlwI GGATC 1 cut(s) 157
Ama87I CYCGRG 1 cut(s) 261
AoxI GGCC 2 cut(s) 266, 308
AsiGI ACCGGT 1 cut(s) 346
AspS9I GGNCC 1 cut(s) 266
AsuHPI GGTGA 3 cut(s) 199, 222, 336
AvaI CYCGRG 1 cut(s) 261
BaeGI GKGCMC 1 cut(s) 285
Bbv12I GWGCWC 1 cut(s) 357
BciT130I CCWGG 2 cut(s) 286, 307
Bme1390I CCNGG 2 cut(s) 286, 307
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 266
BmrFI CCNGG 2 cut(s) 286, 307
Bsa29I ATCGAT 1 cut(s) 180
BsaHI GRCGYC 2 cut(s) 30, 49
BsaJI CCNNGG 3 cut(s) 284, 305, 338
BsaWI WCCGGW 1 cut(s) 346
BsaXI ACNNNNNCTCC 2 cut(s) 352, 382
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse118I RCCGGY 1 cut(s) 346
BseBI CCWGG 2 cut(s) 286, 307
BseCI ATCGAT 1 cut(s) 180
BseDI CCNNGG 3 cut(s) 284, 305, 338
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 263
BseSI GKGCMC 1 cut(s) 285
BshFI GGCC 2 cut(s) 268, 310
BshTI ACCGGT 1 cut(s) 346
BshVI ATCGAT 1 cut(s) 180
BsiHKAI GWGCWC 1 cut(s) 357
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 1 cut(s) 347
BslI CCNNNNNNNGG 1 cut(s) 263
BsnI GGCC 2 cut(s) 268, 310
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 2 cut(s) 285, 357
Bsp143I GATC 2 cut(s) 149, 270
BspACI CCGC 3 cut(s) 200, 248, 302
BspANI GGCC 2 cut(s) 268, 310
BspDI ATCGAT 1 cut(s) 180
BspPI GGATC 1 cut(s) 157
BsrFI RCCGGY 1 cut(s) 346
BssAI RCCGGY 1 cut(s) 346
BssECI CCNNGG 3 cut(s) 284, 305, 338
BssMI GATC 2 cut(s) 149, 270
BssNI GRCGYC 2 cut(s) 30, 49
BssT1I CCWWGG 1 cut(s) 338
Bst2UI CCWGG 2 cut(s) 286, 307
Bst4CI ACNGT 1 cut(s) 280
BstACI GRCGYC 2 cut(s) 30, 49
BstEII GGTNACC 1 cut(s) 342
BstF5I GGATG 1 cut(s) 238
BstKTI GATC 2 cut(s) 152, 273
BstMBI GATC 2 cut(s) 149, 270
BstNI CCWGG 2 cut(s) 286, 307
BstPI GGTNACC 1 cut(s) 342
BstSCI CCNGG 2 cut(s) 284, 305
BstSLI GKGCMC 1 cut(s) 285
BstX2I RGATCY 1 cut(s) 149
BstYI RGATCY 1 cut(s) 149
Bsu15I ATCGAT 1 cut(s) 180
BsuRI GGCC 2 cut(s) 268, 310
BsuTUI ATCGAT 1 cut(s) 180
BtsCI GGATG 1 cut(s) 238
BtsIMutI CAGTG 1 cut(s) 276
Cfr10I RCCGGY 1 cut(s) 346
Cfr13I GGNCC 1 cut(s) 266
ClaI ATCGAT 1 cut(s) 180
CspAI ACCGGT 1 cut(s) 346
CviAII CATG 1 cut(s) 26
DpnI GATC 2 cut(s) 151, 272
DpnII GATC 2 cut(s) 149, 270
EciI GGCGGA 1 cut(s) 291
Eco130I CCWWGG 1 cut(s) 338
Eco57I CTGAAG 1 cut(s) 236
Eco88I CYCGRG 1 cut(s) 261
Eco91I GGTNACC 1 cut(s) 342
EcoO65I GGTNACC 1 cut(s) 342
EcoRII CCWGG 2 cut(s) 284, 305
EcoT14I CCWWGG 1 cut(s) 338
ErhI CCWWGG 1 cut(s) 338
FaeI CATG 1 cut(s) 29
FaiI YATR 5 cut(s) 19, 23, 27, 66, 68
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FatI CATG 1 cut(s) 25
FokI GGATG 1 cut(s) 225
HaeIII GGCC 2 cut(s) 268, 310
HapII CCGG 1 cut(s) 347
Hin1I GRCGYC 2 cut(s) 30, 49
Hin1II CATG 1 cut(s) 29
HinfI GANTC 3 cut(s) 38, 298, 427
HpaII CCGG 1 cut(s) 347
HphI GGTGA 3 cut(s) 199, 222, 336
Hpy188I TCNGA 1 cut(s) 47
Hpy188III TCNNGA 1 cut(s) 126
Hpy99I CGWCG 1 cut(s) 54
HpyAV CCTTC 4 cut(s) 67, 170, 223, 337
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4IV ACGT 2 cut(s) 30, 49
HpyCH4V TGCA 1 cut(s) 140
HpySE526I ACGT 2 cut(s) 30, 49
Hsp92I GRCGYC 2 cut(s) 30, 49
Hsp92II CATG 1 cut(s) 29
Kzo9I GATC 2 cut(s) 149, 270
LpnPI CCDG 7 cut(s) 131, 271, 292, 298, 319, 360, 416
MaeII ACGT 2 cut(s) 30, 49
MaeIII GTNAC 1 cut(s) 342
MalI GATC 2 cut(s) 151, 272
MboI GATC 2 cut(s) 149, 270
MboII GAAGA 2 cut(s) 155, 265
MflI RGATCY 1 cut(s) 149
MhlI GDGCHC 2 cut(s) 285, 357
MluCI AATT 2 cut(s) 314, 387
MlyI GAGTC 2 cut(s) 32, 307
MnlI CCTC 8 cut(s) 119, 202, 238, 243, 257, 270, 321, 334
MseI TTAA 1 cut(s) 455
MspI CCGG 1 cut(s) 347
MspR9I CCNGG 2 cut(s) 286, 307
MvaI CCWGG 2 cut(s) 286, 307
NdeII GATC 2 cut(s) 149, 270
NlaIII CATG 1 cut(s) 29
NmuCI GTSAC 1 cut(s) 342
PaeR7I CTCGAG 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PfeI GAWTC 1 cut(s) 427
PflFI GACNNNGTC 1 cut(s) 41
PinAI ACCGGT 1 cut(s) 346
PleI GAGTC 2 cut(s) 32, 306
PpsI GAGTC 2 cut(s) 32, 306
Psp6I CCWGG 2 cut(s) 284, 305
PspEI GGTNACC 1 cut(s) 342
PspGI CCWGG 2 cut(s) 284, 305
PspPI GGNCC 1 cut(s) 266
PspXI VCTCGAGB 1 cut(s) 261
PsuI RGATCY 1 cut(s) 149
PsyI GACNNNGTC 1 cut(s) 41
SaqAI TTAA 1 cut(s) 455
Sau3AI GATC 2 cut(s) 149, 270
Sau96I GGNCC 1 cut(s) 266
SchI GAGTC 2 cut(s) 32, 307
ScrFI CCNGG 2 cut(s) 286, 307
SduI GDGCHC 2 cut(s) 285, 357
Sfr274I CTCGAG 1 cut(s) 261
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 1 cut(s) 261
SmoI CTYRAG 1 cut(s) 261
Sse9I AATT 2 cut(s) 314, 387
SsiI CCGC 3 cut(s) 200, 248, 302
StyD4I CCNGG 2 cut(s) 284, 305
StyI CCWWGG 1 cut(s) 338
TaaI ACNGT 1 cut(s) 280
TaiI ACGT 2 cut(s) 33, 52
TaqI TCGA 5 cut(s) 127, 180, 216, 262, 402
TasI AATT 2 cut(s) 314, 387
TfiI GAWTC 1 cut(s) 427
Tru1I TTAA 1 cut(s) 455
Tru9I TTAA 1 cut(s) 455
TscAI CASTG 1 cut(s) 283
TseFI GTSAC 1 cut(s) 342
Tsp45I GTSAC 1 cut(s) 342
TspDTI ATGAA 3 cut(s) 17, 81, 86
TspGWI ACGGA 2 cut(s) 31, 310
TspRI CASTG 1 cut(s) 283
Tth111I GACNNNGTC 1 cut(s) 41
XhoI CTCGAG 1 cut(s) 261
ZraI GACGTC 2 cut(s) 31, 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.