Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003332.1

Orthogroup ID

OG0018844

Physical Location & Seq

Genomic Coordinates Forward (+)

123295 .. 125825

Gene Structure 2531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003332.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atggaacctgatcaaaagggtgttcgtatcagaagaattgatcccactgctctggaatctcaggttttgaagccatctgatattcttctcagctttgatggagttaatattgccaatgatggaacatgcatgcccacctcgagggccgatcttcactgtgcccaggctctcactgagtccaacatggcctcaattcaagccctccttcgtgtcgccaaggtcaccagtgggcttgatgtgttctatagtaaggttgtgaggcttgggattgcacaggtgttaacaatgataagagctgtcatcgataaccacgcctctgcaccgcctttcaccacctccgattacagccccttacctcaacatccacaaccgcttcagccacctcgagggccgatcttcactgtgcccaggctctcactgagtccaacctggcctcaattcaagccctccttcgtgtcgccaaggtcaccggttgagcacccaacaagctctccaagatgttgtgaggcttgggattgcacaggtgttaacaatgatgtagcagaagcagaaagcggaggtaaaaagaaaaaaatagaatgggttttgttctgggctgggtttcgggtaatcgtagagataaagaagaagagctgtggagattggagcggagaagaagagagtgtgggctccaatcagtgcgtcggaggtatgggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009507 GO:0009536 GO:0016787 GO:0017171 GO:0019538 GO:0031974 GO:0031981 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_2 Trypsin_2

Protein Analysis

232

Amino Acids

25.26

Weight (kDa)

6.89

Isoelectric Point (pI)

49.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12000 FvH4_5g37890
rosa_laevigata	RLG00000023839
rosa_multiflora	Rmu_sc0003332.1_g000026
rosa_samantha	Rh2BG406700 Rh6AG089800 Rh6CG250200 Rh7DG071300 Rh7DG324400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	2 cut(s)	139, 384
AccBSI	CCGCTC	1 cut(s)	648
AciI	CCGC	4 cut(s)	323, 371, 555, 648
AclWI	GGATC	1 cut(s)	35
AcuI	CTGAAG	1 cut(s)	359
AfiI	CCNNNNNNNGG	2 cut(s)	141, 386
AgeI	ACCGGT	1 cut(s)	469
AgsI	TTSAA	3 cut(s)	70, 197, 442
AjnI	CCWGG	3 cut(s)	162, 407, 428
AluBI	AGCT	4 cut(s)	93, 296, 489, 633
AluI	AGCT	4 cut(s)	93, 296, 489, 633
Alw21I	GWGCWC	1 cut(s)	480
AlwI	GGATC	1 cut(s)	35
Ama87I	CYCGRG	2 cut(s)	139, 384
AoxI	GGCC	4 cut(s)	144, 186, 389, 431
AsiGI	ACCGGT	1 cut(s)	469
AspS9I	GGNCC	2 cut(s)	144, 389
AsuHPI	GGTGA	3 cut(s)	214, 322, 459
AvaI	CYCGRG	2 cut(s)	139, 384
BaeGI	GKGCMC	2 cut(s)	163, 408
BanII	GRGCYC	1 cut(s)	671
Bbv12I	GWGCWC	1 cut(s)	480
BccI	CCATC	3 cut(s)	82, 92, 113
BciT130I	CCWGG	3 cut(s)	164, 409, 430
BclI	TGATCA	1 cut(s)	10
BfmI	CTRYAG	1 cut(s)	244
Bme1390I	CCNGG	3 cut(s)	164, 409, 430
BmeT110I	CYCGRG	2 cut(s)	139, 384
BmgT120I	GGNCC	2 cut(s)	144, 389
BmiI	GGNNCC	2 cut(s)	6, 670
BmrFI	CCNGG	3 cut(s)	164, 409, 430
Bsa29I	ATCGAT	1 cut(s)	303
BsaJI	CCNNGG	4 cut(s)	162, 216, 407, 461
BsaWI	WCCGGW	1 cut(s)	469
BsaXI	ACNNNNNCTCC	2 cut(s)	475, 505
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 386
Bse118I	RCCGGY	1 cut(s)	469
Bse1I	ACTGG	1 cut(s)	225
BseBI	CCWGG	3 cut(s)	164, 409, 430
BseCI	ATCGAT	1 cut(s)	303
BseDI	CCNNGG	4 cut(s)	162, 216, 407, 461
BseGI	GGATG	1 cut(s)	361
BseLI	CCNNNNNNNGG	2 cut(s)	141, 386
BseMII	CTCAG	4 cut(s)	74, 103, 165, 410
BseNI	ACTGG	1 cut(s)	225
BseSI	GKGCMC	2 cut(s)	163, 408
BseYI	CCCAGC	1 cut(s)	596
BsgI	GTGCAG	1 cut(s)	303
BshFI	GGCC	4 cut(s)	146, 188, 391, 433
BshTI	ACCGGT	1 cut(s)	469
BshVI	ATCGAT	1 cut(s)	303
BsiHKAI	GWGCWC	1 cut(s)	480
BsiHKCI	CYCGRG	2 cut(s)	139, 384
BsiSI	CCGG	1 cut(s)	470
BslI	CCNNNNNNNGG	2 cut(s)	141, 386
BsnI	GGCC	4 cut(s)	146, 188, 391, 433
BsoBI	CYCGRG	2 cut(s)	139, 384
Bsp1286I	GDGCHC	4 cut(s)	163, 408, 480, 671
Bsp143I	GATC	4 cut(s)	10, 40, 148, 393
BspACI	CCGC	4 cut(s)	323, 371, 555, 648
BspANI	GGCC	4 cut(s)	146, 188, 391, 433
BspCNI	CTCAG	4 cut(s)	73, 102, 166, 411
BspDI	ATCGAT	1 cut(s)	303
BspLI	GGNNCC	2 cut(s)	6, 670
BspPI	GGATC	1 cut(s)	35
BspQI	GCTCTTC	1 cut(s)	623
BsrBI	CCGCTC	1 cut(s)	648
BsrFI	RCCGGY	1 cut(s)	469
BsrI	ACTGG	1 cut(s)	225
BssAI	RCCGGY	1 cut(s)	469
BssECI	CCNNGG	4 cut(s)	162, 216, 407, 461
BssMI	GATC	4 cut(s)	10, 40, 148, 393
BssT1I	CCWWGG	2 cut(s)	216, 461
Bst2UI	CCWGG	3 cut(s)	164, 409, 430
Bst4CI	ACNGT	2 cut(s)	158, 403
Bst6I	CTCTTC	2 cut(s)	623, 651
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	4 cut(s)	60, 89, 174, 419
BstEII	GGTNACC	2 cut(s)	220, 465
BstF5I	GGATG	1 cut(s)	361
BstKTI	GATC	4 cut(s)	13, 43, 151, 396
BstMBI	GATC	4 cut(s)	10, 40, 148, 393
BstNI	CCWGG	3 cut(s)	164, 409, 430
BstNSI	RCATGY	2 cut(s)	129, 133
BstPI	GGTNACC	2 cut(s)	220, 465
BstSCI	CCNGG	3 cut(s)	162, 407, 428
BstSFI	CTRYAG	1 cut(s)	244
BstSLI	GKGCMC	2 cut(s)	163, 408
BstXI	CCANNNNNNTGG	1 cut(s)	52
Bsu15I	ATCGAT	1 cut(s)	303
BsuRI	GGCC	4 cut(s)	146, 188, 391, 433
BsuTUI	ATCGAT	1 cut(s)	303
BtsCI	GGATG	1 cut(s)	361
BtsI	GCAGTG	1 cut(s)	45
BtsIMutI	CAGTG	7 cut(s)	45, 154, 171, 232, 399, 416, 683
Cac8I	GCNNGC	1 cut(s)	131
Cfr10I	RCCGGY	1 cut(s)	469
Cfr13I	GGNCC	2 cut(s)	144, 389
ClaI	ATCGAT	1 cut(s)	303
CseI	GACGC	1 cut(s)	670
CspAI	ACCGGT	1 cut(s)	469
CviAII	CATG	3 cut(s)	126, 130, 184
DdeI	CTNAG	4 cut(s)	60, 89, 174, 419
DpnI	GATC	4 cut(s)	12, 42, 150, 395
DpnII	GATC	4 cut(s)	10, 40, 148, 393
Eam1104I	CTCTTC	2 cut(s)	623, 651
EarI	CTCTTC	2 cut(s)	623, 651
Eco130I	CCWWGG	2 cut(s)	216, 461
Eco24I	GRGCYC	1 cut(s)	671
Eco57I	CTGAAG	1 cut(s)	359
Eco88I	CYCGRG	2 cut(s)	139, 384
Eco91I	GGTNACC	2 cut(s)	220, 465
EcoO65I	GGTNACC	2 cut(s)	220, 465
EcoRII	CCWGG	3 cut(s)	162, 407, 428
EcoT14I	CCWWGG	2 cut(s)	216, 461
EcoT22I	ATGCAT	1 cut(s)	131
EcoT38I	GRGCYC	1 cut(s)	671
ErhI	CCWWGG	2 cut(s)	216, 461
FaeI	CATG	3 cut(s)	129, 133, 187
FaiI	YATR	5 cut(s)	127, 131, 185, 246, 692
FalI	AAGNNNNNCTT	4 cut(s)	189, 221, 434, 466
FatI	CATG	3 cut(s)	125, 129, 183
FbaI	TGATCA	1 cut(s)	10
FokI	GGATG	1 cut(s)	348
FriOI	GRGCYC	1 cut(s)	671
GsaI	CCCAGC	1 cut(s)	600
HaeIII	GGCC	4 cut(s)	146, 188, 391, 433
HapII	CCGG	1 cut(s)	470
HgaI	GACGC	1 cut(s)	670
Hin1II	CATG	3 cut(s)	129, 133, 187
HincII	GTYRAC	2 cut(s)	282, 529
HindII	GTYRAC	2 cut(s)	282, 529
HinfI	GANTC	3 cut(s)	56, 176, 421
HpaI	GTTAAC	2 cut(s)	282, 529
HpaII	CCGG	1 cut(s)	470
HphI	GGTGA	3 cut(s)	214, 322, 459
Hpy166II	GTNNAC	2 cut(s)	282, 529
Hpy188I	TCNGA	4 cut(s)	32, 79, 340, 686
Hpy188III	TCNNGA	1 cut(s)	53
Hpy8I	GTNNAC	2 cut(s)	282, 529
Hpy99I	CGWCG	1 cut(s)	686
HpyAV	CCTTC	2 cut(s)	215, 460
HpyCH4III	ACNGT	2 cut(s)	158, 403
HpyCH4V	TGCA	4 cut(s)	129, 272, 320, 519
HpyF3I	CTNAG	4 cut(s)	60, 89, 174, 419
Hsp92II	CATG	3 cut(s)	129, 133, 187
Ksp22I	TGATCA	1 cut(s)	10
KspAI	GTTAAC	2 cut(s)	282, 529
Kzo9I	GATC	4 cut(s)	10, 40, 148, 393
LguI	GCTCTTC	1 cut(s)	623
LmnI	GCTCC	2 cut(s)	645, 674
MaeIII	GTNAC	2 cut(s)	220, 465
MalI	GATC	4 cut(s)	12, 42, 150, 395
MbiI	CCGCTC	1 cut(s)	648
MboI	GATC	4 cut(s)	10, 40, 148, 393
MboII	GAAGA	8 cut(s)	45, 77, 143, 388, 637, 640, 665, 668
MhlI	GDGCHC	4 cut(s)	163, 408, 480, 671
MluCI	AATT	3 cut(s)	36, 192, 437
MlyI	GAGTC	2 cut(s)	185, 430
MmeI	TCCRAC	3 cut(s)	204, 449, 664
Mph1103I	ATGCAT	1 cut(s)	131
MseI	TTAA	3 cut(s)	105, 281, 528
MspI	CCGG	1 cut(s)	470
MspR9I	CCNGG	3 cut(s)	164, 409, 430
MvaI	CCWGG	3 cut(s)	164, 409, 430
NdeII	GATC	4 cut(s)	10, 40, 148, 393
NlaIII	CATG	3 cut(s)	129, 133, 187
NlaIV	GGNNCC	2 cut(s)	6, 670
NmuCI	GTSAC	2 cut(s)	220, 465
NsiI	ATGCAT	1 cut(s)	131
NspI	RCATGY	2 cut(s)	129, 133
PaeI	GCATGC	1 cut(s)	133
PaeR7I	CTCGAG	2 cut(s)	139, 384
PciSI	GCTCTTC	1 cut(s)	623
PfeI	GAWTC	1 cut(s)	56
PinAI	ACCGGT	1 cut(s)	469
PleI	GAGTC	2 cut(s)	184, 429
PpsI	GAGTC	2 cut(s)	184, 429
Psp6I	CCWGG	3 cut(s)	162, 407, 428
PspEI	GGTNACC	2 cut(s)	220, 465
PspFI	CCCAGC	1 cut(s)	596
PspGI	CCWGG	3 cut(s)	162, 407, 428
PspN4I	GGNNCC	2 cut(s)	6, 670
PspPI	GGNCC	2 cut(s)	144, 389
PspXI	VCTCGAGB	2 cut(s)	139, 384
SapI	GCTCTTC	1 cut(s)	623
SaqAI	TTAA	3 cut(s)	105, 281, 528
Sau3AI	GATC	4 cut(s)	10, 40, 148, 393
Sau96I	GGNCC	2 cut(s)	144, 389
SchI	GAGTC	2 cut(s)	185, 430
ScrFI	CCNGG	3 cut(s)	164, 409, 430
SduI	GDGCHC	4 cut(s)	163, 408, 480, 671
SfcI	CTRYAG	1 cut(s)	244
Sfr274I	CTCGAG	2 cut(s)	139, 384
SlaI	CTCGAG	2 cut(s)	139, 384
SmlI	CTYRAG	2 cut(s)	139, 384
SmoI	CTYRAG	2 cut(s)	139, 384
SphI	GCATGC	1 cut(s)	133
Sse9I	AATT	3 cut(s)	36, 192, 437
SsiI	CCGC	4 cut(s)	323, 371, 555, 648
SspI	AATATT	1 cut(s)	109
StyD4I	CCNGG	3 cut(s)	162, 407, 428
StyI	CCWWGG	2 cut(s)	216, 461
TaaI	ACNGT	2 cut(s)	158, 403
TaqI	TCGA	3 cut(s)	140, 303, 385
TasI	AATT	3 cut(s)	36, 192, 437
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	3 cut(s)	105, 281, 528
Tru9I	TTAA	3 cut(s)	105, 281, 528
TscAI	CASTG	7 cut(s)	52, 161, 178, 232, 406, 423, 683
TseFI	GTSAC	2 cut(s)	220, 465
Tsp45I	GTSAC	2 cut(s)	220, 465
TspRI	CASTG	7 cut(s)	52, 161, 178, 232, 406, 423, 683
XceI	RCATGY	2 cut(s)	129, 133
XhoI	CTCGAG	2 cut(s)	139, 384
Zsp2I	ATGCAT	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.