RLG00000023839

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0018844
Physical Location & Seq
Reverse (-)
29025010 .. 29025534
525 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023839

Sequence Viewer

Length: 387 bp
ATGGCTCTGCAACTCTGGGATCTCTTTTCCCTTCTTTTTGTTGCCACCGATCACCACGGCTCTACACCGCCTTTCACCACCTCCGATTACAGCCCCTCACTTCAACATCCACAACCCCTTCAGCTGCCTCGAGGGCCGATCTTCACTGTGCCCAGGCTCTCAATGAGTCCAATCCGGCCTCAATTCAAGCCCTCCTTCGTGTCGCCAAGATCACTGATAGAGCACCCAACAAGCTCTCTAAGATGTGGGATTGATGTGTTTTGCAGTAAGGTTGTGAGGCTTGGGATTGCTCAGGTAACTGGAGAGATAGAGAAGAAGAGCTGTGGAGATTGGAGTGGAGAAGAAGAAAGTGAGGGCTCTGATCACTTCGTCGGAGGTCTGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.05

Weight (kDa)

5.89

Isoelectric Point (pI)

62.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018844)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g12000 FvH4_5g37890
rosa_laevigata RLG00000023839
rosa_multiflora Rmu_sc0003332.1_g000026
rosa_samantha Rh2BG406700 Rh6AG089800 Rh6CG250200 Rh7DG071300 Rh7DG324400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 129
AciI CCGC 1 cut(s) 68
AclWI GGATC 1 cut(s) 27
AcuI CTGAAG 1 cut(s) 104
AgsI TTSAA 2 cut(s) 104, 187
AjnI CCWGG 1 cut(s) 152
AluBI AGCT 3 cut(s) 124, 234, 321
AluI AGCT 3 cut(s) 124, 234, 321
Alw21I GWGCWC 1 cut(s) 225
AlwI GGATC 1 cut(s) 27
Ama87I CYCGRG 1 cut(s) 129
AoxI GGCC 3 cut(s) 134, 176, 381
ApeKI GCWGC 1 cut(s) 124
AspS9I GGNCC 1 cut(s) 134
AsuHPI GGTGA 2 cut(s) 44, 67
AvaI CYCGRG 1 cut(s) 129
BaeGI GKGCMC 1 cut(s) 153
BanII GRGCYC 1 cut(s) 359
Bbv12I GWGCWC 1 cut(s) 225
BbvI GCAGC 1 cut(s) 111
BceAI ACGGC 1 cut(s) 73
BciT130I CCWGG 1 cut(s) 154
BclI TGATCA 1 cut(s) 361
BglI GCCNNNNNGGC 1 cut(s) 133
BisI GCNGC 1 cut(s) 125
BlsI GCNGC 1 cut(s) 126
Bme1390I CCNGG 1 cut(s) 154
BmeT110I CYCGRG 1 cut(s) 129
BmgT120I GGNCC 1 cut(s) 134
BmrFI CCNGG 1 cut(s) 154
BpmI CTGGAG 1 cut(s) 321
Bpu10I CCTNAGC 1 cut(s) 291
BsaJI CCNNGG 2 cut(s) 55, 152
Bse1I ACTGG 1 cut(s) 304
BseBI CCWGG 1 cut(s) 154
BseDI CCNNGG 2 cut(s) 55, 152
BseGI GGATG 1 cut(s) 106
BseMII CTCAG 1 cut(s) 305
BseNI ACTGG 1 cut(s) 304
BseSI GKGCMC 1 cut(s) 153
BseXI GCAGC 1 cut(s) 111
BshFI GGCC 3 cut(s) 136, 178, 383
BsiHKAI GWGCWC 1 cut(s) 225
BsiHKCI CYCGRG 1 cut(s) 129
BsiSI CCGG 1 cut(s) 175
BsnI GGCC 3 cut(s) 136, 178, 383
BsoBI CYCGRG 1 cut(s) 129
Bsp1286I GDGCHC 3 cut(s) 153, 225, 359
Bsp143I GATC 5 cut(s) 19, 49, 138, 209, 361
BspACI CCGC 1 cut(s) 68
BspANI GGCC 3 cut(s) 136, 178, 383
BspCNI CTCAG 1 cut(s) 304
BspPI GGATC 1 cut(s) 27
BspQI GCTCTTC 1 cut(s) 311
BsrI ACTGG 1 cut(s) 304
BssECI CCNNGG 2 cut(s) 55, 152
BssMI GATC 5 cut(s) 19, 49, 138, 209, 361
Bst2UI CCWGG 1 cut(s) 154
Bst4CI ACNGT 1 cut(s) 148
Bst6I CTCTTC 1 cut(s) 311
BstDEI CTNAG 2 cut(s) 239, 291
BstDSI CCRYGG 1 cut(s) 55
BstF5I GGATG 1 cut(s) 106
BstKTI GATC 5 cut(s) 22, 52, 141, 212, 364
BstMBI GATC 5 cut(s) 19, 49, 138, 209, 361
BstMWI GCNNNNNNNGC 1 cut(s) 133
BstNI CCWGG 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 152
BstSLI GKGCMC 1 cut(s) 153
BstV1I GCAGC 1 cut(s) 111
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BsuRI GGCC 3 cut(s) 136, 178, 383
BtgI CCRYGG 1 cut(s) 55
BtsCI GGATG 1 cut(s) 106
BtsIMutI CAGTG 2 cut(s) 144, 212
Cfr13I GGNCC 1 cut(s) 134
DdeI CTNAG 2 cut(s) 239, 291
DpnI GATC 5 cut(s) 21, 51, 140, 211, 363
DpnII GATC 5 cut(s) 19, 49, 138, 209, 361
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
Eco24I GRGCYC 1 cut(s) 359
Eco57I CTGAAG 1 cut(s) 104
Eco88I CYCGRG 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 152
EcoT38I GRGCYC 1 cut(s) 359
FalI AAGNNNNNCTT 2 cut(s) 179, 211
FbaI TGATCA 1 cut(s) 361
Fnu4HI GCNGC 1 cut(s) 125
FokI GGATG 1 cut(s) 93
FriOI GRGCYC 1 cut(s) 359
Fsp4HI GCNGC 1 cut(s) 125
GluI GCNGC 1 cut(s) 125
GsuI CTGGAG 1 cut(s) 321
HaeIII GGCC 3 cut(s) 136, 178, 383
HapII CCGG 1 cut(s) 175
HinfI GANTC 1 cut(s) 166
HpaII CCGG 1 cut(s) 175
HphI GGTGA 2 cut(s) 44, 67
Hpy188I TCNGA 3 cut(s) 85, 361, 374
Hpy99I CGWCG 1 cut(s) 374
HpyAV CCTTC 3 cut(s) 41, 128, 205
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4V TGCA 2 cut(s) 10, 264
HpyF10VI GCNNNNNNNGC 1 cut(s) 133
HpyF3I CTNAG 2 cut(s) 239, 291
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 5 cut(s) 19, 49, 138, 209, 361
LguI GCTCTTC 1 cut(s) 311
LpnPI CCDG 6 cut(s) 139, 166, 188, 278, 285, 365
Lsp1109I GCAGC 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 295
MalI GATC 5 cut(s) 21, 51, 140, 211, 363
MboI GATC 5 cut(s) 19, 49, 138, 209, 361
MboII GAAGA 5 cut(s) 133, 325, 328, 353, 356
MflI RGATCY 1 cut(s) 19
MhlI GDGCHC 3 cut(s) 153, 225, 359
MluCI AATT 1 cut(s) 182
MlyI GAGTC 1 cut(s) 175
MmeI TCCRAC 1 cut(s) 352
MnlI CCTC 9 cut(s) 91, 106, 125, 138, 189, 202, 270, 346, 368
MspA1I CMGCKG 1 cut(s) 124
MspI CCGG 1 cut(s) 175
MspR9I CCNGG 1 cut(s) 154
MvaI CCWGG 1 cut(s) 154
MwoI GCNNNNNNNGC 1 cut(s) 133
NdeII GATC 5 cut(s) 19, 49, 138, 209, 361
PaeR7I CTCGAG 1 cut(s) 129
PciSI GCTCTTC 1 cut(s) 311
PkrI GCNGC 1 cut(s) 126
PleI GAGTC 1 cut(s) 174
PpsI GAGTC 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 152
PspGI CCWGG 1 cut(s) 152
PspPI GGNCC 1 cut(s) 134
PspXI VCTCGAGB 1 cut(s) 129
PsuI RGATCY 1 cut(s) 19
PvuII CAGCTG 1 cut(s) 124
SapI GCTCTTC 1 cut(s) 311
SatI GCNGC 1 cut(s) 125
Sau3AI GATC 5 cut(s) 19, 49, 138, 209, 361
Sau96I GGNCC 1 cut(s) 134
SchI GAGTC 1 cut(s) 175
ScrFI CCNGG 1 cut(s) 154
SduI GDGCHC 3 cut(s) 153, 225, 359
SetI ASST 7 cut(s) 83, 126, 236, 273, 297, 323, 379
Sfr274I CTCGAG 1 cut(s) 129
SlaI CTCGAG 1 cut(s) 129
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
Sse9I AATT 1 cut(s) 182
SsiI CCGC 1 cut(s) 68
StyD4I CCNGG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 148
TaqI TCGA 1 cut(s) 130
TasI AATT 1 cut(s) 182
TscAI CASTG 2 cut(s) 151, 219
TseI GCWGC 1 cut(s) 124
TspRI CASTG 2 cut(s) 151, 219
XhoI CTCGAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.