Rh6AG089800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0018844
Physical Location & Seq
Forward (+)
13263478 .. 13267426
3949 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG089800.1

Sequence Viewer

Length: 228 bp
ATGGGAAGCCCCTCACCTCAACATCCACAACCGCTTCAGCCGCCTCCAGGGCCGATCTTCACTGTGCCCAGGCTCTCACTGAGTCCAGCCCAGCCTCAATTCAAGCCCTCCTTCGTGTCGCCAAGGTCACCGGTTGAGCACCCAACAAGCTCTCCAAGATGTGGGCTTGATGTGTTTTGCAGTAAGGTTGTGAGGCTTGGGATTGCTCAAGTGTTGACAGTGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.04

Weight (kDa)

10.09

Isoelectric Point (pI)

79.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018844)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g12000 FvH4_5g37890
rosa_laevigata RLG00000023839
rosa_multiflora Rmu_sc0003332.1_g000026
rosa_samantha Rh2BG406700 Rh6AG089800 Rh6CG250200 Rh7DG071300 Rh7DG324400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 161
AciI CCGC 2 cut(s) 32, 41
AcuI CTGAAG 1 cut(s) 20
AfiI CCNNNNNNNGG 2 cut(s) 47, 161
AgeI ACCGGT 1 cut(s) 130
AgsI TTSAA 1 cut(s) 103
AjnI CCWGG 2 cut(s) 46, 68
AluBI AGCT 1 cut(s) 150
AluI AGCT 1 cut(s) 150
Alw21I GWGCWC 1 cut(s) 141
AoxI GGCC 1 cut(s) 50
AsiGI ACCGGT 1 cut(s) 130
AspS9I GGNCC 1 cut(s) 50
AsuHPI GGTGA 2 cut(s) 6, 120
BaeGI GKGCMC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 141
BciT130I CCWGG 2 cut(s) 48, 70
BglI GCCNNNNNGGC 1 cut(s) 49
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
Bme1390I CCNGG 2 cut(s) 48, 70
BmgT120I GGNCC 1 cut(s) 50
BmrFI CCNGG 2 cut(s) 48, 70
BpmI CTGGAG 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 192
BsaJI CCNNGG 3 cut(s) 47, 68, 122
BsaWI WCCGGW 1 cut(s) 130
BsaXI ACNNNNNCTCC 2 cut(s) 136, 166
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 161
Bse118I RCCGGY 1 cut(s) 130
BseBI CCWGG 2 cut(s) 48, 70
BseDI CCNNGG 3 cut(s) 47, 68, 122
BseGI GGATG 1 cut(s) 22
BseLI CCNNNNNNNGG 2 cut(s) 47, 161
BseMII CTCAG 1 cut(s) 71
BseSI GKGCMC 1 cut(s) 69
BseYI CCCAGC 1 cut(s) 90
BshFI GGCC 1 cut(s) 52
BshTI ACCGGT 1 cut(s) 130
BsiHKAI GWGCWC 1 cut(s) 141
BsiSI CCGG 1 cut(s) 131
BslI CCNNNNNNNGG 2 cut(s) 47, 161
BsnI GGCC 1 cut(s) 52
Bsp1286I GDGCHC 2 cut(s) 69, 141
Bsp143I GATC 1 cut(s) 54
BspACI CCGC 2 cut(s) 32, 41
BspANI GGCC 1 cut(s) 52
BspCNI CTCAG 1 cut(s) 72
BsrFI RCCGGY 1 cut(s) 130
BssAI RCCGGY 1 cut(s) 130
BssECI CCNNGG 3 cut(s) 47, 68, 122
BssMI GATC 1 cut(s) 54
BssT1I CCWWGG 1 cut(s) 122
Bst2UI CCWGG 2 cut(s) 48, 70
Bst4CI ACNGT 2 cut(s) 64, 220
BstDEI CTNAG 1 cut(s) 80
BstEII GGTNACC 1 cut(s) 126
BstF5I GGATG 1 cut(s) 22
BstKTI GATC 1 cut(s) 57
BstMBI GATC 1 cut(s) 54
BstMWI GCNNNNNNNGC 2 cut(s) 40, 49
BstNI CCWGG 2 cut(s) 48, 70
BstPI GGTNACC 1 cut(s) 126
BstSCI CCNGG 2 cut(s) 46, 68
BstSLI GKGCMC 1 cut(s) 69
BsuRI GGCC 1 cut(s) 52
BtsCI GGATG 1 cut(s) 22
BtsIMutI CAGTG 3 cut(s) 60, 77, 225
Cfr10I RCCGGY 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 50
CspAI ACCGGT 1 cut(s) 130
DdeI CTNAG 1 cut(s) 80
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 20
Eco91I GGTNACC 1 cut(s) 126
EcoO65I GGTNACC 1 cut(s) 126
EcoRII CCWGG 2 cut(s) 46, 68
EcoT14I CCWWGG 1 cut(s) 122
ErhI CCWWGG 1 cut(s) 122
FalI AAGNNNNNCTT 2 cut(s) 95, 127
Fnu4HI GCNGC 1 cut(s) 41
FokI GGATG 1 cut(s) 9
Fsp4HI GCNGC 1 cut(s) 41
GluI GCNGC 1 cut(s) 41
GsaI CCCAGC 1 cut(s) 94
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 1 cut(s) 52
HapII CCGG 1 cut(s) 131
HincII GTYRAC 1 cut(s) 216
HindII GTYRAC 1 cut(s) 216
HinfI GANTC 1 cut(s) 82
HpaII CCGG 1 cut(s) 131
HphI GGTGA 2 cut(s) 6, 120
Hpy166II GTNNAC 1 cut(s) 216
Hpy8I GTNNAC 1 cut(s) 216
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 2 cut(s) 64, 220
HpyCH4V TGCA 1 cut(s) 180
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 49
HpyF3I CTNAG 1 cut(s) 80
Kzo9I GATC 1 cut(s) 54
LpnPI CCDG 7 cut(s) 33, 55, 60, 82, 99, 104, 144
MaeIII GTNAC 1 cut(s) 126
MalI GATC 1 cut(s) 56
MboI GATC 1 cut(s) 54
MboII GAAGA 1 cut(s) 49
MhlI GDGCHC 2 cut(s) 69, 141
MluCI AATT 1 cut(s) 98
MlyI GAGTC 1 cut(s) 91
MnlI CCTC 6 cut(s) 22, 27, 54, 105, 118, 186
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 2 cut(s) 48, 70
MvaI CCWGG 2 cut(s) 48, 70
MwoI GCNNNNNNNGC 2 cut(s) 40, 49
NdeII GATC 1 cut(s) 54
NmuCI GTSAC 1 cut(s) 126
PflMI CCANNNNNTGG 1 cut(s) 161
PinAI ACCGGT 1 cut(s) 130
PkrI GCNGC 1 cut(s) 42
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
Psp6I CCWGG 2 cut(s) 46, 68
PspEI GGTNACC 1 cut(s) 126
PspFI CCCAGC 1 cut(s) 90
PspGI CCWGG 2 cut(s) 46, 68
PspPI GGNCC 1 cut(s) 50
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 1 cut(s) 54
Sau96I GGNCC 1 cut(s) 50
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 2 cut(s) 48, 70
SduI GDGCHC 2 cut(s) 69, 141
SetI ASST 4 cut(s) 19, 128, 152, 189
SmlI CTYRAG 1 cut(s) 207
SmoI CTYRAG 1 cut(s) 207
Sse9I AATT 1 cut(s) 98
SsiI CCGC 2 cut(s) 32, 41
StyD4I CCNGG 2 cut(s) 46, 68
StyI CCWWGG 1 cut(s) 122
TaaI ACNGT 2 cut(s) 64, 220
TasI AATT 1 cut(s) 98
TauI GCSGC 1 cut(s) 43
TscAI CASTG 3 cut(s) 67, 84, 225
TseFI GTSAC 1 cut(s) 126
Tsp45I GTSAC 1 cut(s) 126
TspRI CASTG 3 cut(s) 67, 84, 225
Van91I CCANNNNNTGG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.