FvH4_5g12600

Partial alpha/beta-hydrolase lipase region

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
7107520 .. 7111669
4150 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g12600.t3

Sequence Viewer

Length: 1347 bp
ATGATGCAGCGGCTCGTTGACAACGCCATCGCTGTCACCAAAGAGTCAGTGAAGACGGTGACGTATGAATCGCTGAACAATATTGTGAGATTGATCAACGGAATTTCGGCTTTGTTGTTAGCGCTTTTGCCTGGGAAGGCTAATGTTCTCGAAGGAATCCATGGCTGGGAGCTCCGGCCTACCTTTCGTGGACCTCGATTCCCTCGCTGGATGGAGAATGGCGTGTCGTCTTTCAATCAACTCATTCATGAGCTTTCTGTGGATTCGGATACCGAAGGTTCTAGCATAGATTATGAGGAAGAATATAGTGATGATGACATGTCTCCTGCTTCACCTTGTTCACAAAGCTCAAGAGTCTCCAGGTCTTCTAGTATTCCGAAGGAGTGGACAGGATGGATGTGGATCAGTTACATATTTTATTGGATTTTGTTTCCTGCAAGGTTCATGCTTGGCCTTCCTGGTCTTCTTTGCCGTTCTTCTAATGAGAGGTCCACGCCACCCTCACCAGGAGGCAGTCATTTTTCGCGGAGGAGTAGTTCTTTGAATAAAGTGCAGTTCCTCAAGGATCACATTATTCAGCGCACTACTGATAGGAGACGTGGAGTCATTGAGGATCTTCATCTTGCGATTGAGATATTCATAGAAGCTGTATTCGATCTTGTTTATAAAGCTGCCCATTTTGTTCTTCACCCATTATATGCTCTTAGAACGCTATTTGGGTTGTTTTCATCAGACAGTAACAGATTTCAAGATACTTATGATAGTGCGTCAGAAGCTACTGTTCCAACAGCTACACTTGGAGATGATTATCCCGCTCCTACAGAAACTACAGATAGGAATACTTCGTTTCAGGCATTGAATACTGATGCTAGAACATGCCAGGATGTCATTACAGAGCTTGGGTACCCATATGAAGCTATTCATGTGATCACTCGTGATGGATATGTTCTTCACTTGGAAAGAATCCCAAGACGTGATTCACGGAAAGCTGTTTACCTACAACACGGAATTCTAGATTCATCTATGGGTTGGGTCTCCAATGGGGTTGTCGGTTCACCTGCATTTGCTGCCTACGATCAAGGATATGATGTCTTCCTTGGGAACTTTCGTGGCTTGGTTTCTAGGGAGCATGCTGACAAAAGCATTTCCTCACAACAGTACTGGCAGTACTCAATCAATGAGCATGGGACTCAGGATATCCCTGCAATGATAGAGAAGATCCACCAAATTAAAACTGCGGAATTGAAGCTTAGTCAACCTGATATCGAGGAAGAAACCAATGAGGATAGAAGAGAAACCCCACAGGCTATCAAGATTGATTTTATTATCACCTGCTGGCTTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

449

Amino Acids

50.79

Weight (kDa)

5.36

Isoelectric Point (pI)

56.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydro_lipase PF04083 188 - 242 2.3e-15 Partial alpha/beta-hydrolase lipase region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011380)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 666
AarI CACCTGC 2 cut(s) 1066, 1340
Acc36I ACCTGC 2 cut(s) 1066, 1340
Acc65I GGTACC 1 cut(s) 903
AccB1I GGYRCC 1 cut(s) 903
AccBSI CCGCTC 1 cut(s) 815
AccII CGCG 1 cut(s) 526
AciI CCGC 4 cut(s) 10, 526, 813, 1238
AclWI GGATC 4 cut(s) 410, 573, 621, 1213
AcsI RAATTY 2 cut(s) 102, 1008
AfaI GTAC 3 cut(s) 905, 1160, 1169
AfeI AGCGCT 1 cut(s) 123
AfiI CCNNNNNNNGG 2 cut(s) 166, 506
AflIII ACRYGT 1 cut(s) 318
AgsI TTSAA 5 cut(s) 235, 544, 749, 859, 1246
AhdI GACNNNNNGTC 1 cut(s) 602
AjiI CACGTC 2 cut(s) 599, 974
AjnI CCWGG 5 cut(s) 130, 359, 457, 505, 879
AjuI GAANNNNNNNTTGG 2 cut(s) 961, 993
AloI GAACNNNNNNTCC 2 cut(s) 520, 552
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 4 cut(s) 327, 361, 589, 1039
AlwI GGATC 4 cut(s) 410, 573, 621, 1213
Aor51HI AGCGCT 1 cut(s) 123
AoxI GGCC 2 cut(s) 176, 451
ApeKI GCWGC 3 cut(s) 7, 671, 1067
ApoI RAATTY 2 cut(s) 102, 1008
Asp700I GAANNNNTTC 1 cut(s) 918
Asp718I GGTACC 1 cut(s) 903
AspLEI GCGC 2 cut(s) 124, 582
AspS9I GGNCC 2 cut(s) 191, 489
AsuHPI GGTGA 7 cut(s) 28, 70, 324, 495, 680, 1047, 1321
AvaII GGWCC 2 cut(s) 191, 489
BanI GGYRCC 1 cut(s) 903
BanII GRGCYC 1 cut(s) 174
BauI CACGAG 1 cut(s) 933
BbsI GAAGAC 4 cut(s) 59, 357, 455, 1084
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 3 cut(s) 19, 658, 1054
BccI CCATC 4 cut(s) 35, 205, 387, 932
BceAI ACGGC 1 cut(s) 456
BciT130I CCWGG 5 cut(s) 132, 361, 459, 507, 881
BciVI GTATCC 1 cut(s) 262
BclI TGATCA 2 cut(s) 93, 927
BcoDI GTCTC 4 cut(s) 327, 361, 589, 1039
BfaI CTAG 5 cut(s) 282, 369, 870, 1013, 1122
BfmI CTRYAG 2 cut(s) 819, 828
BfoI RGCGCY 1 cut(s) 125
BfuAI ACCTGC 2 cut(s) 1066, 1340
BfuI GTATCC 1 cut(s) 262
BisI GCNGC 4 cut(s) 8, 11, 672, 1068
BlsI GCNGC 4 cut(s) 9, 12, 673, 1069
BmcAI AGTACT 2 cut(s) 1160, 1169
Bme1390I CCNGG 5 cut(s) 132, 361, 459, 507, 881
Bme18I GGWCC 2 cut(s) 191, 489
BmeRI GACNNNNNGTC 1 cut(s) 602
BmgBI CACGTC 2 cut(s) 599, 974
BmgT120I GGNCC 2 cut(s) 191, 489
BmiI GGNNCC 1 cut(s) 905
BmrFI CCNGG 5 cut(s) 132, 361, 459, 507, 881
BmsI GCATC 1 cut(s) 856
BpiI GAAGAC 4 cut(s) 59, 357, 455, 1084
BpmI CTGGAG 1 cut(s) 343
BpuEI CTTGAG 2 cut(s) 334, 545
BsaBI GATNNNNATC 3 cut(s) 401, 618, 807
BsaI GGTCTC 1 cut(s) 1039
BsaJI CCNNGG 3 cut(s) 131, 160, 1096
BsaXI ACNNNNNCTCC 2 cut(s) 520, 550
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 506
Bse1I ACTGG 1 cut(s) 1166
Bse3DI GCAATG 1 cut(s) 1212
Bse8I GATNNNNATC 3 cut(s) 401, 618, 807
BseBI CCWGG 5 cut(s) 132, 361, 459, 507, 881
BseDI CCNNGG 3 cut(s) 131, 160, 1096
BseGI GGATG 4 cut(s) 216, 398, 402, 889
BseJI GATNNNNATC 3 cut(s) 401, 618, 807
BseLI CCNNNNNNNGG 2 cut(s) 166, 506
BseMI GCAATG 1 cut(s) 1212
BseMII CTCAG 1 cut(s) 1205
BseNI ACTGG 1 cut(s) 1166
BseRI GAGGAG 1 cut(s) 544
BseXI GCAGC 3 cut(s) 19, 658, 1054
BseYI CCCAGC 1 cut(s) 165
BsgI GTGCAG 1 cut(s) 572
Bsh1236I CGCG 1 cut(s) 526
BshFI GGCC 2 cut(s) 178, 453
BshNI GGYRCC 1 cut(s) 903
BsiHKAI GWGCWC 1 cut(s) 174
BsiSI CCGG 1 cut(s) 175
BslFI GGGAC 1 cut(s) 1201
BslI CCNNNNNNNGG 2 cut(s) 166, 506
BsmAI GTCTC 4 cut(s) 327, 361, 589, 1039
BsmBI CGTCTC 1 cut(s) 589
BsmFI GGGAC 1 cut(s) 1201
BsnI GGCC 2 cut(s) 178, 453
Bso31I GGTCTC 1 cut(s) 1039
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 8 cut(s) 93, 402, 565, 613, 655, 927, 1075, 1218
Bsp19I CCATGG 1 cut(s) 160
BspACI CCGC 4 cut(s) 10, 526, 813, 1238
BspANI GGCC 2 cut(s) 178, 453
BspCNI CTCAG 1 cut(s) 1204
BspFNI CGCG 1 cut(s) 526
BspHI TCATGA 1 cut(s) 247
BspLI GGNNCC 1 cut(s) 905
BspMI ACCTGC 2 cut(s) 1066, 1340
BspPI GGATC 4 cut(s) 410, 573, 621, 1213
BspT107I GGYRCC 1 cut(s) 903
BspTNI GGTCTC 1 cut(s) 1039
BsrBI CCGCTC 1 cut(s) 815
BsrDI GCAATG 1 cut(s) 1212
BsrI ACTGG 1 cut(s) 1166
BssECI CCNNGG 3 cut(s) 131, 160, 1096
BssMI GATC 8 cut(s) 93, 402, 565, 613, 655, 927, 1075, 1218
BssSI CACGAG 1 cut(s) 933
BssT1I CCWWGG 2 cut(s) 160, 1096
Bst2BI CACGAG 1 cut(s) 933
Bst2UI CCWGG 5 cut(s) 132, 361, 459, 507, 881
Bst4CI ACNGT 4 cut(s) 58, 737, 781, 1158
Bst6I CTCTTC 1 cut(s) 1285
BstAPI GCANNNNNTGC 1 cut(s) 1067
BstC8I GCNNGC 2 cut(s) 1131, 1337
BstDEI CTNAG 3 cut(s) 704, 1191, 1250
BstDSI CCRYGG 1 cut(s) 160
BstF5I GGATG 4 cut(s) 216, 398, 402, 889
BstFNI CGCG 1 cut(s) 526
BstH2I RGCGCY 1 cut(s) 125
BstHHI GCGC 2 cut(s) 124, 582
BstKTI GATC 8 cut(s) 96, 405, 568, 616, 658, 930, 1078, 1221
BstMAI GTCTC 4 cut(s) 327, 361, 589, 1039
BstMBI GATC 8 cut(s) 93, 402, 565, 613, 655, 927, 1075, 1218
BstMWI GCNNNNNNNGC 2 cut(s) 773, 1067
BstNI CCWGG 5 cut(s) 132, 361, 459, 507, 881
BstNSI RCATGY 3 cut(s) 322, 879, 1133
BstSCI CCNGG 5 cut(s) 130, 359, 457, 505, 879
BstSFI CTRYAG 2 cut(s) 819, 828
BstUI CGCG 1 cut(s) 526
BstV1I GCAGC 3 cut(s) 19, 658, 1054
BstV2I GAAGAC 4 cut(s) 59, 357, 455, 1084
BstX2I RGATCY 2 cut(s) 613, 1218
BstYI RGATCY 2 cut(s) 613, 1218
BsuI GTATCC 1 cut(s) 262
BsuRI GGCC 2 cut(s) 178, 453
BtgI CCRYGG 1 cut(s) 160
BtgZI GCGATG 1 cut(s) 13
BtrI CACGTC 2 cut(s) 599, 974
BtsCI GGATG 4 cut(s) 216, 398, 402, 889
BtsIMutI CAGTG 1 cut(s) 54
BveI ACCTGC 2 cut(s) 1066, 1340
Cac8I GCNNGC 2 cut(s) 1131, 1337
CciI TCATGA 1 cut(s) 247
CfoI GCGC 2 cut(s) 124, 582
Cfr13I GGNCC 2 cut(s) 191, 489
CseI GACGC 1 cut(s) 756
Csp6I GTAC 3 cut(s) 904, 1159, 1168
CviAII CATG 9 cut(s) 161, 248, 319, 445, 876, 923, 1130, 1184, 1344
CviQI GTAC 3 cut(s) 904, 1159, 1168
DdeI CTNAG 3 cut(s) 704, 1191, 1250
DpnI GATC 8 cut(s) 95, 404, 567, 615, 657, 929, 1077, 1220
DpnII GATC 8 cut(s) 93, 402, 565, 613, 655, 927, 1075, 1218
DriI GACNNNNNGTC 1 cut(s) 602
Eam1104I CTCTTC 1 cut(s) 1285
Eam1105I GACNNNNNGTC 1 cut(s) 602
EarI CTCTTC 1 cut(s) 1285
Ecl136II GAGCTC 1 cut(s) 172
Eco130I CCWWGG 2 cut(s) 160, 1096
Eco24I GRGCYC 1 cut(s) 174
Eco31I GGTCTC 1 cut(s) 1039
Eco32I GATATC 2 cut(s) 1198, 1264
Eco47I GGWCC 2 cut(s) 191, 489
Eco47III AGCGCT 1 cut(s) 123
Eco53kI GAGCTC 1 cut(s) 172
EcoICRI GAGCTC 1 cut(s) 172
EcoRI GAATTC 1 cut(s) 1008
EcoRII CCWGG 5 cut(s) 130, 359, 457, 505, 879
EcoRV GATATC 2 cut(s) 1198, 1264
EcoT14I CCWWGG 2 cut(s) 160, 1096
EcoT38I GRGCYC 1 cut(s) 174
ErhI CCWWGG 2 cut(s) 160, 1096
Esp3I CGTCTC 1 cut(s) 589
FaeI CATG 9 cut(s) 164, 251, 322, 448, 879, 926, 1133, 1187, 1347
FaqI GGGAC 1 cut(s) 1201
FatI CATG 9 cut(s) 160, 247, 318, 444, 875, 922, 1129, 1183, 1343
FauI CCCGC 1 cut(s) 820
FauNDI CATATG 1 cut(s) 910
FbaI TGATCA 2 cut(s) 93, 927
Fnu4HI GCNGC 4 cut(s) 8, 11, 672, 1068
FokI GGATG 4 cut(s) 223, 405, 409, 896
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 4 cut(s) 8, 11, 672, 1068
FspBI CTAG 5 cut(s) 282, 369, 870, 1013, 1122
GlaI GCGC 2 cut(s) 123, 581
GluI GCNGC 4 cut(s) 8, 11, 672, 1068
GsaI CCCAGC 1 cut(s) 169
GsuI CTGGAG 1 cut(s) 343
HaeII RGCGCY 1 cut(s) 125
HaeIII GGCC 2 cut(s) 178, 453
HapII CCGG 1 cut(s) 175
HgaI GACGC 1 cut(s) 756
HhaI GCGC 2 cut(s) 124, 582
Hin1II CATG 9 cut(s) 164, 251, 322, 448, 879, 926, 1133, 1187, 1347
Hin6I GCGC 2 cut(s) 122, 580
HinP1I GCGC 2 cut(s) 122, 580
HincII GTYRAC 2 cut(s) 19, 1256
HindII GTYRAC 2 cut(s) 19, 1256
HindIII AAGCTT 1 cut(s) 1247
HpaII CCGG 1 cut(s) 175
HphI GGTGA 7 cut(s) 28, 70, 324, 495, 680, 1047, 1321
Hpy166II GTNNAC 8 cut(s) 19, 191, 341, 387, 492, 994, 1055, 1256
Hpy188I TCNGA 4 cut(s) 268, 378, 733, 772
Hpy188III TCNNGA 8 cut(s) 149, 248, 351, 749, 935, 1013, 1193, 1312
Hpy8I GTNNAC 8 cut(s) 19, 191, 341, 387, 492, 994, 1055, 1256
HpyAV CCTTC 5 cut(s) 130, 146, 269, 373, 464
HpyCH4III ACNGT 4 cut(s) 58, 737, 781, 1158
HpyCH4IV ACGT 3 cut(s) 62, 598, 973
HpyCH4V TGCA 5 cut(s) 7, 437, 553, 1061, 1205
HpyF10VI GCNNNNNNNGC 2 cut(s) 773, 1067
HpyF3I CTNAG 3 cut(s) 704, 1191, 1250
HpySE526I ACGT 3 cut(s) 62, 598, 973
Hsp92II CATG 9 cut(s) 164, 251, 322, 448, 879, 926, 1133, 1187, 1347
HspAI GCGC 2 cut(s) 122, 580
KpnI GGTACC 1 cut(s) 907
Ksp22I TGATCA 2 cut(s) 93, 927
Kzo9I GATC 8 cut(s) 93, 402, 565, 613, 655, 927, 1075, 1218
LmnI GCTCC 4 cut(s) 169, 177, 820, 1126
Lsp1109I GCAGC 3 cut(s) 19, 658, 1054
LweI GCATC 1 cut(s) 856
MaeI CTAG 5 cut(s) 282, 369, 870, 1013, 1122
MaeII ACGT 3 cut(s) 62, 598, 973
MaeIII GTNAC 4 cut(s) 34, 58, 407, 737
MalI GATC 8 cut(s) 95, 404, 567, 615, 657, 929, 1077, 1220
MbiI CCGCTC 1 cut(s) 815
MboI GATC 8 cut(s) 93, 402, 565, 613, 655, 927, 1075, 1218
MflI RGATCY 2 cut(s) 613, 1218
MhlI GDGCHC 1 cut(s) 174
MluCI AATT 4 cut(s) 102, 1008, 1227, 1241
MlyI GAGTC 4 cut(s) 53, 363, 612, 1183
MmeI TCCRAC 1 cut(s) 809
MroXI GAANNNNTTC 1 cut(s) 918
MseI TTAA 1 cut(s) 1230
MspA1I CMGCKG 1 cut(s) 10
MspI CCGG 1 cut(s) 175
MspR9I CCNGG 5 cut(s) 132, 361, 459, 507, 881
MvaI CCWGG 5 cut(s) 132, 361, 459, 507, 881
MvnI CGCG 1 cut(s) 526
MwoI GCNNNNNNNGC 2 cut(s) 773, 1067
NcoI CCATGG 1 cut(s) 160
NdeI CATATG 1 cut(s) 910
NdeII GATC 8 cut(s) 93, 402, 565, 613, 655, 927, 1075, 1218
NlaIII CATG 9 cut(s) 164, 251, 322, 448, 879, 926, 1133, 1187, 1347
NlaIV GGNNCC 1 cut(s) 905
NmuCI GTSAC 2 cut(s) 34, 58
NspI RCATGY 3 cut(s) 322, 879, 1133
PaeI GCATGC 1 cut(s) 1133
PagI TCATGA 1 cut(s) 247
PaqCI CACCTGC 2 cut(s) 1066, 1340
PciI ACATGT 1 cut(s) 318
PcsI WCGNNNNNNNCGW 1 cut(s) 193
PdmI GAANNNNTTC 1 cut(s) 918
PfeI GAWTC 7 cut(s) 68, 156, 198, 263, 963, 977, 1016
PkrI GCNGC 4 cut(s) 9, 12, 673, 1069
PleI GAGTC 4 cut(s) 52, 362, 611, 1183
PpsI GAGTC 4 cut(s) 52, 362, 611, 1183
PscI ACATGT 1 cut(s) 318
PsiI TTATAA 1 cut(s) 666
Psp124BI GAGCTC 1 cut(s) 174
Psp6I CCWGG 5 cut(s) 130, 359, 457, 505, 879
PspFI CCCAGC 1 cut(s) 165
PspGI CCWGG 5 cut(s) 130, 359, 457, 505, 879
PspN4I GGNNCC 1 cut(s) 905
PspPI GGNCC 2 cut(s) 191, 489
PsuI RGATCY 2 cut(s) 613, 1218
RsaI GTAC 3 cut(s) 905, 1160, 1169
RsaNI GTAC 3 cut(s) 904, 1159, 1168
SacI GAGCTC 1 cut(s) 174
SaqAI TTAA 1 cut(s) 1230
SatI GCNGC 4 cut(s) 8, 11, 672, 1068
Sau3AI GATC 8 cut(s) 93, 402, 565, 613, 655, 927, 1075, 1218
Sau96I GGNCC 2 cut(s) 191, 489
ScaI AGTACT 2 cut(s) 1160, 1169
SchI GAGTC 4 cut(s) 53, 363, 612, 1183
ScrFI CCNGG 5 cut(s) 132, 361, 459, 507, 881
SduI GDGCHC 1 cut(s) 174
SfaNI GCATC 1 cut(s) 856
SfcI CTRYAG 2 cut(s) 819, 828
SinI GGWCC 2 cut(s) 191, 489
SmlI CTYRAG 2 cut(s) 349, 560
SmoI CTYRAG 2 cut(s) 349, 560
SphI GCATGC 1 cut(s) 1133
Sse9I AATT 4 cut(s) 102, 1008, 1227, 1241
SsiI CCGC 4 cut(s) 10, 526, 813, 1238
SspI AATATT 1 cut(s) 82
SspMI CTAG 5 cut(s) 282, 369, 870, 1013, 1122
SstI GAGCTC 1 cut(s) 174
StyD4I CCNGG 5 cut(s) 130, 359, 457, 505, 879
StyI CCWWGG 2 cut(s) 160, 1096
TaaI ACNGT 4 cut(s) 58, 737, 781, 1158
TaiI ACGT 3 cut(s) 65, 601, 976
TaqI TCGA 4 cut(s) 150, 196, 654, 1266
TasI AATT 4 cut(s) 102, 1008, 1227, 1241
TatI WGTACW 2 cut(s) 1158, 1167
TauI GCSGC 1 cut(s) 13
TfiI GAWTC 7 cut(s) 68, 156, 198, 263, 963, 977, 1016
Tru1I TTAA 1 cut(s) 1230
Tru9I TTAA 1 cut(s) 1230
TscAI CASTG 1 cut(s) 54
TseFI GTSAC 2 cut(s) 34, 58
TseI GCWGC 3 cut(s) 7, 671, 1067
Tsp45I GTSAC 2 cut(s) 34, 58
TspDTI ATGAA 9 cut(s) 81, 236, 433, 608, 628, 717, 911, 927, 1008
TspGWI ACGGA 3 cut(s) 114, 997, 1020
TspRI CASTG 1 cut(s) 54
VpaK11BI GGWCC 2 cut(s) 191, 489
XapI RAATTY 2 cut(s) 102, 1008
XbaI TCTAGA 1 cut(s) 1012
XceI RCATGY 3 cut(s) 322, 879, 1133
XmnI GAANNNNTTC 1 cut(s) 918
XspI CTAG 5 cut(s) 282, 369, 870, 1013, 1122
ZrmI AGTACT 2 cut(s) 1160, 1169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.