pycom06g18940

Partial alpha/beta-hydrolase lipase region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0011380
Physical Location & Seq
Reverse (-)
22511893 .. 22512780
888 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g18940.1

Sequence Viewer

Length: 888 bp
ATGATAGAGAAGATTCACCAAGTTAAAACTGCTGAATTGAAACTTAGTCAACCTGATCTTGACGAAGAAACAAATGATGGTCAACCTTACAAACTCTGTGCCATTTGTCATAGCTTGGGAGGAGCAGCAGCACTTATGTACGTTATAACACAGAGAATAGAAGAGAAACCACACAGACTCTCCAGATTGGTTTTACTATCACCTGCTGGCTTCCATGGTGATTCCACCTTTATGTTTACGATTATGGAGCATGTTTTTCTTTTATTGGCTCCTCTTCTGGCTCCTCTTGTGCCTGGTTTTTACATACCAACCAGGTTCTTTCGCATGCTTCTGAACAAGTTGGCGCGAGACTTCCATAACTATCCCGCTGTTGGGGGACTGGTTCAGACCTTAATGAGTTATTTTGTTGGTGGGGATAGCTCAAATTGGGTTGGCGTTTTAGGGTTACCACATTATAACATGAATGACATGCCGGGGGTATCATTCCGAGTGGCTCTCCATCTTGCACAAATGAAACGTGCAGGGAAGTTTAGAATGTTTGATTATGGGAGTGCTTCTGCTAATATGGAGGTGTACGGATGTCCAGAGCCATTCGACTTGGGGGAGTACTATGGGCTTATTGATGTTCCTGTTGATCTGGTTGCTGGAAGAAAGGACAAGGTTATACGGCCATCGATGGTCAGAAAACATTATAAGTTGATGAAGGAATCTGGTGTTGATGTATCCTACAATGAGTTTGAGTACGCCCATCTGGACTTCACATTTTCTCATCGAGAAGAACTCTTGGCATATGTCATGTCACGCTTGCTGCTTGTTGAGCCAGCTCCAAAGCAGCAATCCAGTCAGAAGGCCGTAAAGTTGAAGAAGAGAGCCCCAGCTACTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydro_lipase

Protein Analysis

296

Amino Acids

33.28

Weight (kDa)

8.59

Isoelectric Point (pI)

48.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18460 AT1G73920 AT1G73920
fragaria_vesca FvH4_5g12600 FvH4_5g12600
malus_domestica MD06G1212200.v1.1 MD14G1222700.v1.1
prunus_persica Prupe.5G218200_v2.0.a1
pyrus_communis pycom06g18940 pycom14g18440
rosa_chinensis RchiOBHm_Chr7g0184731
rosa_laevigata RLG00000004955
rosa_multiflora Rmu_ssc0000289.1_g000019
rosa_roxburghii Rroxscaffold_3G00269390
rosa_rugosa Rorug06G0464800
rosa_samantha Rh7AG078100 Rh7BG069200 Rh7CG070000 Rh7DG069400
rosa_wichuraiana Rw7G005730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 146, 456, 693
AarI CACCTGC 1 cut(s) 211
Acc36I ACCTGC 1 cut(s) 211
AccII CGCG 1 cut(s) 346
AciI CCGC 1 cut(s) 366
AcoI YGGCCR 1 cut(s) 668
AfaI GTAC 4 cut(s) 140, 575, 608, 743
AfiI CCNNNNNNNGG 2 cut(s) 371, 372
AgsI TTSAA 2 cut(s) 40, 862
AhlI ACTAGT 1 cut(s) 881
AjnI CCWGG 2 cut(s) 292, 311
AluBI AGCT 4 cut(s) 114, 420, 824, 878
AluI AGCT 4 cut(s) 114, 420, 824, 878
Alw26I GTCTC 1 cut(s) 342
AoxI GGCC 2 cut(s) 668, 849
ApeKI GCWGC 4 cut(s) 125, 128, 808, 832
AspLEI GCGC 1 cut(s) 346
AsuC2I CCSGG 1 cut(s) 474
AsuHPI GGTGA 3 cut(s) 8, 192, 230
BanII GRGCYC 1 cut(s) 874
BbvI GCAGC 4 cut(s) 137, 140, 795, 844
BccI CCATC 5 cut(s) 71, 507, 670, 679, 756
BceAI ACGGC 2 cut(s) 683, 836
BciT130I CCWGG 2 cut(s) 294, 313
BciVI GTATCC 1 cut(s) 733
BcnI CCSGG 1 cut(s) 474
BcoDI GTCTC 1 cut(s) 342
BcuI ACTAGT 1 cut(s) 881
BfaI CTAG 1 cut(s) 882
BfuAI ACCTGC 1 cut(s) 211
BfuI GTATCC 1 cut(s) 733
BisI GCNGC 4 cut(s) 126, 129, 809, 833
BlsI GCNGC 4 cut(s) 127, 130, 810, 834
BmcAI AGTACT 1 cut(s) 608
Bme1390I CCNGG 3 cut(s) 294, 313, 474
BmiI GGNNCC 2 cut(s) 270, 282
BmrFI CCNGG 3 cut(s) 294, 313, 474
BplI GAGNNNNNCTC 4 cut(s) 480, 512, 765, 797
BpmI CTGGAG 1 cut(s) 166
BpuMI CCSGG 1 cut(s) 474
Bsa29I ATCGAT 1 cut(s) 674
BsaJI CCNNGG 2 cut(s) 214, 473
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
Bsc4I CCNNNNNNNGG 2 cut(s) 371, 372
Bse1I ACTGG 2 cut(s) 384, 840
BseBI CCWGG 2 cut(s) 294, 313
BseCI ATCGAT 1 cut(s) 674
BseDI CCNNGG 2 cut(s) 214, 473
BseGI GGATG 1 cut(s) 584
BseLI CCNNNNNNNGG 2 cut(s) 371, 372
BseNI ACTGG 2 cut(s) 384, 840
BseRI GAGGAG 3 cut(s) 135, 261, 273
BseXI GCAGC 4 cut(s) 137, 140, 795, 844
BseYI CCCAGC 1 cut(s) 874
BsgI GTGCAG 1 cut(s) 540
Bsh1236I CGCG 1 cut(s) 346
BshFI GGCC 2 cut(s) 670, 851
BshVI ATCGAT 1 cut(s) 674
BsiSI CCGG 1 cut(s) 473
BslFI GGGAC 1 cut(s) 390
BslI CCNNNNNNNGG 2 cut(s) 371, 372
BsmAI GTCTC 1 cut(s) 342
BsmFI GGGAC 1 cut(s) 390
BsnI GGCC 2 cut(s) 670, 851
Bsp1286I GDGCHC 1 cut(s) 874
Bsp143I GATC 2 cut(s) 55, 634
Bsp19I CCATGG 1 cut(s) 214
BspACI CCGC 1 cut(s) 366
BspANI GGCC 2 cut(s) 670, 851
BspDI ATCGAT 1 cut(s) 674
BspFNI CGCG 1 cut(s) 346
BspLI GGNNCC 2 cut(s) 270, 282
BspMI ACCTGC 1 cut(s) 211
BsrI ACTGG 2 cut(s) 384, 840
BssECI CCNNGG 2 cut(s) 214, 473
BssMI GATC 2 cut(s) 55, 634
BssT1I CCWWGG 1 cut(s) 214
Bst2UI CCWGG 2 cut(s) 294, 313
Bst6I CTCTTC 3 cut(s) 156, 279, 860
BstC8I GCNNGC 4 cut(s) 208, 326, 806, 822
BstDEI CTNAG 1 cut(s) 44
BstDSI CCRYGG 1 cut(s) 214
BstEII GGTNACC 1 cut(s) 444
BstF5I GGATG 1 cut(s) 584
BstFNI CGCG 1 cut(s) 346
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 2 cut(s) 58, 637
BstMAI GTCTC 1 cut(s) 342
BstMBI GATC 2 cut(s) 55, 634
BstMWI GCNNNNNNNGC 1 cut(s) 817
BstNI CCWGG 2 cut(s) 294, 313
BstNSI RCATGY 3 cut(s) 254, 328, 472
BstPI GGTNACC 1 cut(s) 444
BstSCI CCNGG 3 cut(s) 292, 311, 472
BstUI CGCG 1 cut(s) 346
BstV1I GCAGC 4 cut(s) 137, 140, 795, 844
Bsu15I ATCGAT 1 cut(s) 674
BsuI GTATCC 1 cut(s) 733
BsuRI GGCC 2 cut(s) 670, 851
BsuTUI ATCGAT 1 cut(s) 674
BtgI CCRYGG 1 cut(s) 214
BtsCI GGATG 1 cut(s) 584
BveI ACCTGC 1 cut(s) 211
Cac8I GCNNGC 4 cut(s) 208, 326, 806, 822
CfoI GCGC 1 cut(s) 346
ClaI ATCGAT 1 cut(s) 674
CsiI ACCWGGT 1 cut(s) 311
Csp6I GTAC 4 cut(s) 139, 574, 607, 742
CviAII CATG 6 cut(s) 215, 251, 325, 460, 469, 796
CviQI GTAC 4 cut(s) 139, 574, 607, 742
DdeI CTNAG 1 cut(s) 44
DpnI GATC 2 cut(s) 57, 636
DpnII GATC 2 cut(s) 55, 634
EaeI YGGCCR 1 cut(s) 668
Eam1104I CTCTTC 3 cut(s) 156, 279, 860
EarI CTCTTC 3 cut(s) 156, 279, 860
Eco130I CCWWGG 1 cut(s) 214
Eco24I GRGCYC 1 cut(s) 874
Eco91I GGTNACC 1 cut(s) 444
EcoO65I GGTNACC 1 cut(s) 444
EcoRII CCWGG 2 cut(s) 292, 311
EcoT14I CCWWGG 1 cut(s) 214
EcoT38I GRGCYC 1 cut(s) 874
ErhI CCWWGG 1 cut(s) 214
FaeI CATG 6 cut(s) 218, 254, 328, 463, 472, 799
FaqI GGGAC 1 cut(s) 390
FatI CATG 6 cut(s) 214, 250, 324, 459, 468, 795
FauI CCCGC 1 cut(s) 373
FauNDI CATATG 1 cut(s) 790
Fnu4HI GCNGC 4 cut(s) 126, 129, 809, 833
FokI GGATG 1 cut(s) 591
FriOI GRGCYC 1 cut(s) 874
Fsp4HI GCNGC 4 cut(s) 126, 129, 809, 833
FspBI CTAG 1 cut(s) 882
GlaI GCGC 1 cut(s) 345
GluI GCNGC 4 cut(s) 126, 129, 809, 833
GsaI CCCAGC 1 cut(s) 878
GsuI CTGGAG 1 cut(s) 166
HaeIII GGCC 2 cut(s) 670, 851
HapII CCGG 1 cut(s) 473
HhaI GCGC 1 cut(s) 346
Hin1II CATG 6 cut(s) 218, 254, 328, 463, 472, 799
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HincII GTYRAC 2 cut(s) 50, 83
HindII GTYRAC 2 cut(s) 50, 83
HinfI GANTC 4 cut(s) 13, 177, 221, 707
HpaII CCGG 1 cut(s) 473
HphI GGTGA 3 cut(s) 8, 192, 230
Hpy166II GTNNAC 4 cut(s) 50, 83, 237, 574
Hpy188I TCNGA 5 cut(s) 333, 387, 488, 683, 846
Hpy188III TCNNGA 5 cut(s) 59, 183, 584, 752, 773
Hpy8I GTNNAC 4 cut(s) 50, 83, 237, 574
HpyAV CCTTC 2 cut(s) 697, 841
HpyCH4IV ACGT 2 cut(s) 141, 517
HpyCH4V TGCA 2 cut(s) 506, 521
HpyF10VI GCNNNNNNNGC 1 cut(s) 817
HpyF3I CTNAG 1 cut(s) 44
HpySE526I ACGT 2 cut(s) 141, 517
Hsp92II CATG 6 cut(s) 218, 254, 328, 463, 472, 799
HspAI GCGC 1 cut(s) 344
Kzo9I GATC 2 cut(s) 55, 634
LmnI GCTCC 5 cut(s) 122, 247, 274, 286, 829
Lsp1109I GCAGC 4 cut(s) 137, 140, 795, 844
MabI ACCWGGT 1 cut(s) 311
MaeI CTAG 1 cut(s) 882
MaeII ACGT 2 cut(s) 141, 517
MaeIII GTNAC 2 cut(s) 444, 798
MalI GATC 2 cut(s) 57, 636
MboI GATC 2 cut(s) 55, 634
MboII GAAGA 8 cut(s) 22, 77, 173, 266, 660, 788, 874, 877
MhlI GDGCHC 1 cut(s) 874
MluCI AATT 2 cut(s) 35, 424
MlyI GAGTC 1 cut(s) 171
MnlI CCTC 4 cut(s) 113, 282, 294, 562
MseI TTAA 2 cut(s) 24, 392
MslI CAYNNNNRTG 1 cut(s) 230
MspA1I CMGCKG 1 cut(s) 368
MspI CCGG 1 cut(s) 473
MspR9I CCNGG 3 cut(s) 294, 313, 474
MvaI CCWGG 2 cut(s) 294, 313
MvnI CGCG 1 cut(s) 346
MwoI GCNNNNNNNGC 1 cut(s) 817
NciI CCSGG 1 cut(s) 474
NcoI CCATGG 1 cut(s) 214
NdeI CATATG 1 cut(s) 790
NdeII GATC 2 cut(s) 55, 634
NlaIII CATG 6 cut(s) 218, 254, 328, 463, 472, 799
NlaIV GGNNCC 2 cut(s) 270, 282
NmuCI GTSAC 1 cut(s) 798
NspI RCATGY 3 cut(s) 254, 328, 472
PaeI GCATGC 1 cut(s) 328
PaqCI CACCTGC 1 cut(s) 211
PfeI GAWTC 3 cut(s) 13, 221, 707
PkrI GCNGC 4 cut(s) 127, 130, 810, 834
PleI GAGTC 1 cut(s) 171
PpsI GAGTC 1 cut(s) 171
PsiI TTATAA 3 cut(s) 146, 456, 693
Psp6I CCWGG 2 cut(s) 292, 311
PspEI GGTNACC 1 cut(s) 444
PspFI CCCAGC 1 cut(s) 874
PspGI CCWGG 2 cut(s) 292, 311
PspN4I GGNNCC 2 cut(s) 270, 282
RsaI GTAC 4 cut(s) 140, 575, 608, 743
RsaNI GTAC 4 cut(s) 139, 574, 607, 742
RseI CAYNNNNRTG 1 cut(s) 230
SaqAI TTAA 2 cut(s) 24, 392
SatI GCNGC 4 cut(s) 126, 129, 809, 833
Sau3AI GATC 2 cut(s) 55, 634
ScaI AGTACT 1 cut(s) 608
SchI GAGTC 1 cut(s) 171
ScrFI CCNGG 3 cut(s) 294, 313, 474
SduI GDGCHC 1 cut(s) 874
SexAI ACCWGGT 1 cut(s) 311
SmiMI CAYNNNNRTG 1 cut(s) 230
SpeI ACTAGT 1 cut(s) 881
SphI GCATGC 1 cut(s) 328
Sse9I AATT 2 cut(s) 35, 424
SsiI CCGC 1 cut(s) 366
SspMI CTAG 1 cut(s) 882
StyD4I CCNGG 3 cut(s) 292, 311, 472
StyI CCWWGG 1 cut(s) 214
TaiI ACGT 2 cut(s) 144, 520
TaqI TCGA 3 cut(s) 594, 674, 772
TasI AATT 2 cut(s) 35, 424
TatI WGTACW 1 cut(s) 606
TfiI GAWTC 3 cut(s) 13, 221, 707
Tru1I TTAA 2 cut(s) 24, 392
Tru9I TTAA 2 cut(s) 24, 392
TseFI GTSAC 1 cut(s) 798
TseI GCWGC 4 cut(s) 125, 128, 808, 832
Tsp45I GTSAC 1 cut(s) 798
TspDTI ATGAA 3 cut(s) 476, 527, 716
TspGWI ACGGA 1 cut(s) 591
XceI RCATGY 3 cut(s) 254, 328, 472
XspI CTAG 1 cut(s) 882
ZrmI AGTACT 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.