Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0016338

Physical Location & Seq

Genomic Coordinates Forward (+)

7511508 .. 7514000

Gene Structure 2493 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g13310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2070 bp

ATGGCGCGTGAAACAGACGACTCGTCCTCCCCAAACAAACGCCTGAAAACCCTAAATCCCCAAATCGAATCCCAACCGGATCCAAATCAACCCGAAACCCCGCCGGAAACCGATGATTCGCCGCCCGACCGCTGCGCTATTTGCTTCTTGGACGATGGCAAAGCCGCCCGAGGCAAAATCGATTGCTGCGACCACTACTTCTGCTTCTTGTGCATCAAAGAATGGGCCAAAACCGAGTCACGCTGCCCAATTTGCCGCCGGCGGTTCAACTCCATCCGGCGGCCGCCGAAAGTCGGCGTCTTTGTTCGTGAGCGCGTTGTTAAGGTCCCGGTTCGAGATCAGGGAGATAAATCGGGGCATGTTGATGCTTATGAAGAAGTAGCGTGTAATGTGTGTAGCTCAATGACAGATGATCATTTTATGTTGCTATGTGATTTATGTGATGGAGCGGCACATACTTACTGTGTTGGGCTTGGTTACACTGTGCCGGAAGGCGATTGGTTTTGTAACGACTGCATAGCTTCTAGACCTGAGCTTGCTAATGGGAATGGTGAGGATGAATGTGGTATGATCCCAACAGAAGCTGTGCCTGTGCCTTGTTTATCGGTCTCTGATATTGTAAGAGAACCGAATTTCTCGGTGGTTCAAAGACCGGTGAGAATCACTCCAAATTCAAATCAGTCCTTGGTTGGTGCTCAAGTTGGCAGGCCAGCAAAAGCACCACCAAGGGTTGCCAGTATATCAGCTGAATCAGCTGCAAGAACATTGGATAGGTGTCGAAATGTGCAGACTCGCATATTTACACTACGTGAGAATTGGAATGGCTTCCGCAGTGGTGCATTGAGCTTCCCTGCAAGTTCATCGAAATCGAAAGCTGGGTGCAGCGGTAGTCAAGGAAATGGTGTGATGTCTCTTGAAAGATCAAGCCAAACAGAATCTTCATTATCTCCAAGTCGTCAGGAACTGGAAATTCGAGGTGGTTGCGACCCCCATGATATTGCCAAGGCATGGAAAATGCTGGAAAGGGCAAAGCCAAAACAGTGTATACATAAAAAGAACAGTAGTGGGGTTCAGTTGTTGCAGTTCTCAAAACTTCCTTTTAGCAGAACAAGTGCTCTGAAGGAACAAACCAGTGCGAATCCATGTCCCTATAGATCAGGTCAACAACAAGCCTCGTTTTCAACAGGTTGTCAGCAAAATGAAGTAGGTTGTGGCTCGCGTGAGATTGTCAAAACATGGAAAATAATGGATAGGGCAAAGTTGAAACAACATGTTGATGAAAGCACCAGCAGTGCCCTGAAGCTTCCATCTAGGAAAGCAAATGCTTCACATGAAGCAAGCAATGTGAATTCAAGTTTCAACACATTGAAAGGCCAACAACTTGGAGCTCCAAATCAAGGAAGACCTGAAATGGAGAAGGTATACAAAGGTAAGGAAAGGCAGCCTAGGGTCACAACACAGGAGGCTGTAGAGTCAATCCTAGGCATTTCATGTAGTAATTCTTCACCAGGATTATTTATAGCTCCATATCCTAGGAACATGAATAGGTCAGCTTCATTACAGAAAAATCAACCTGCACTGAGTATGGTTAATGAGCAAAATGGTTCTGCTTCTTCACTGATGGAAGGAACTTCTAATTCGTTTTGTGGCAAACCTGAGCTCAGTACATCTTCTTCCGGGAACTTAGAAGAGGTCTCTGTGGAAAGCAGAGCAAGAAAAGTAGACGATGAGGCCAAAAGTGAGATCCAGTCTCTTGTCAAGATGAACTTGAAGCTTCTAAGTAAAGACCAGCGCCTAGGAGCTGATGCATTCAAACAAATTGCTAGGGCTGCCACACATACCGTCTTGGCTGCATGTGGTTTAGAGCATCATCACAAGTCTGTTGTGCACTCATCCTCAAGCTTAGTATGCCGCCACACCGAACAGCTTCAGCTGCCACATAAATCTAATCTGATGCGTAAGGCCTGCCGAGATTGCTTTTATGGGTTTGTGAAAGATGTTGTCAGTTCAATTCTGCACAATCATGATGGGTTCCGACTGCGGTTTTCAGGTCATAAACAGAAGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0006139 GO:0006351 GO:0006366 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0019904 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0070063 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD zf-RING_2

Protein Analysis

690

Amino Acids

75.7

Weight (kDa)

8.86

Isoelectric Point (pI)

49.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	44 - 86	2.5e-07	Ring finger domain
PHD	PF00628	129 - 172	1.1e-08	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016338)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g13310
malus_domestica	MD06G1206300.v1.1
prunus_persica	Prupe.5G210700_v2.0.a1 Prupe.5G210700_v2.0.a1
pyrus_communis	pycom06g18420
rosa_chinensis	RchiOBHm_Chr7g0183831
rosa_laevigata	RLG00000005017
rosa_multiflora	Rmu_sc0013966.1_g000004
rosa_roxburghii	Rroxscaffold_3G00270150
rosa_rugosa	Rorug06G0461100
rosa_samantha	Rh7AG061800 Rh7BG061900 Rh7CG063400 Rh7DG061600
rosa_wichuraiana	Rw7G005110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1582
AccB7I	CCANNNNNTGG	1 cut(s)	1008
AccBSI	CCGCTC	1 cut(s)	449
AccI	GTMKAC	3 cut(s)	1045, 1422, 1722
AccII	CGCG	3 cut(s)	7, 315, 1219
AclWI	GGATC	4 cut(s)	74, 87, 565, 1738
AcoI	YGGCCR	1 cut(s)	281
AcsI	RAATTY	4 cut(s)	631, 670, 969, 1348
AcuI	CTGAAG	3 cut(s)	1139, 1319, 1913
AcyI	GRCGYC	1 cut(s)	297
AdeI	CACNNNGTG	1 cut(s)	809
AfaI	GTAC	1 cut(s)	1666
AfiI	CCNNNNNNNGG	4 cut(s)	279, 293, 1008, 1397
AflIII	ACRYGT	1 cut(s)	1270
AgeI	ACCGGT	1 cut(s)	652
AhdI	GACNNNNNGTC	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	1507
Alw21I	GWGCWC	5 cut(s)	697, 1117, 1390, 1662, 1890
Alw26I	GTCTC	4 cut(s)	613, 915, 1699, 1755
Alw44I	GTGCAC	1 cut(s)	1886
AlwI	GGATC	4 cut(s)	74, 87, 565, 1738
AlwNI	CAGNNNCTG	2 cut(s)	584, 964
Ama87I	CYCGRG	1 cut(s)	168
AoxI	GGCC	6 cut(s)	225, 281, 707, 1372, 1731, 1962
ApaLI	GTGCAC	1 cut(s)	1886
ApeKI	GCWGC	9 cut(s)	132, 186, 243, 755, 882, 1441, 1829, 1850, 1933
ApoI	RAATTY	4 cut(s)	631, 670, 969, 1348
AsiGI	ACCGGT	1 cut(s)	652
Asp700I	GAANNNNTTC	2 cut(s)	824, 1926
AspA2I	CCTAGG	4 cut(s)	1445, 1480, 1532, 1795
AspLEI	GCGC	4 cut(s)	7, 137, 315, 1794
AspS9I	GGNCC	2 cut(s)	225, 325
AsuC2I	CCSGG	2 cut(s)	329, 1678
AsuHPI	GGTGA	3 cut(s)	563, 667, 1497
AvaI	CYCGRG	1 cut(s)	168
AvaII	GGWCC	1 cut(s)	325
AvrII	CCTAGG	4 cut(s)	1445, 1480, 1532, 1795
BaeGI	GKGCMC	2 cut(s)	1297, 1890
BamHI	GGATCC	1 cut(s)	79
BanII	GRGCYC	2 cut(s)	1390, 1662
BarI	GAAGNNNNNNTAC	4 cut(s)	1486, 1518, 1657, 1689
BbsI	GAAGAC	1 cut(s)	1408
Bbv12I	GWGCWC	5 cut(s)	697, 1117, 1390, 1662, 1890
BbvI	GCAGC	9 cut(s)	119, 173, 230, 742, 894, 1453, 1816, 1837, 1920
BccI	CCATC	6 cut(s)	149, 281, 437, 1315, 1615, 2021
BcgI	CGANNNNNNTGC	4 cut(s)	843, 877, 963, 997
BciT130I	CCWGG	1 cut(s)	1509
BclI	TGATCA	1 cut(s)	412
BcnI	CCSGG	2 cut(s)	329, 1678
BcoDI	GTCTC	4 cut(s)	613, 915, 1699, 1755
BfaI	CTAG	7 cut(s)	525, 1311, 1446, 1481, 1533, 1796, 1824
BfmI	CTRYAG	2 cut(s)	1150, 1467
BfoI	RGCGCY	1 cut(s)	1795
BfuAI	ACCTGC	1 cut(s)	1582
BlnI	CCTAGG	4 cut(s)	1445, 1480, 1532, 1795
Bme1390I	CCNGG	3 cut(s)	329, 1509, 1678
Bme18I	GGWCC	1 cut(s)	325
BmeRI	GACNNNNNGTC	1 cut(s)	22
BmeT110I	CYCGRG	1 cut(s)	168
BmgT120I	GGNCC	2 cut(s)	225, 325
BmiI	GGNNCC	3 cut(s)	81, 327, 2033
BmrFI	CCNGG	3 cut(s)	329, 1509, 1678
BmsI	GCATC	5 cut(s)	222, 355, 1795, 1876, 1944
BpiI	GAAGAC	1 cut(s)	1408
BplI	GAGNNNNNCTC	2 cut(s)	649, 681
Bpu10I	CCTNAGC	2 cut(s)	531, 1656
BpuEI	CTTGAG	2 cut(s)	681, 1882
BpuMI	CCSGG	2 cut(s)	329, 1678
Bsa29I	ATCGAT	1 cut(s)	180
BsaAI	YACGTR	1 cut(s)	809
BsaBI	GATNNNNATC	1 cut(s)	84
BsaHI	GRCGYC	1 cut(s)	297
BsaI	GGTCTC	2 cut(s)	613, 1699
BsaJI	CCNNGG	8 cut(s)	169, 684, 725, 1002, 1445, 1480, 1532, 1795
BsaWI	WCCGGW	2 cut(s)	76, 652
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	4 cut(s)	279, 293, 1008, 1397
Bse118I	RCCGGY	2 cut(s)	258, 652
Bse1I	ACTGG	4 cut(s)	735, 969, 1131, 1747
Bse3DI	GCAATG	1 cut(s)	1348
Bse8I	GATNNNNATC	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	1509
BseCI	ATCGAT	1 cut(s)	180
BseDI	CCNNGG	8 cut(s)	169, 684, 725, 1002, 1445, 1480, 1532, 1795
BseGI	GGATG	3 cut(s)	273, 562, 1892
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	4 cut(s)	279, 293, 1008, 1397
BseMI	GCAATG	1 cut(s)	1348
BseMII	CTCAG	4 cut(s)	522, 1571, 1647, 1675
BseNI	ACTGG	4 cut(s)	735, 969, 1131, 1747
BseSI	GKGCMC	2 cut(s)	1297, 1890
BseX3I	CGGCCG	1 cut(s)	281
BseXI	GCAGC	9 cut(s)	119, 173, 230, 742, 894, 1453, 1816, 1837, 1920
BseYI	CCCAGC	1 cut(s)	875
BsgI	GTGCAG	4 cut(s)	806, 901, 1560, 2000
Bsh1236I	CGCG	3 cut(s)	7, 315, 1219
Bsh1285I	CGRYCG	2 cut(s)	130, 284
BshFI	GGCC	6 cut(s)	227, 283, 709, 1374, 1733, 1964
BshTI	ACCGGT	1 cut(s)	652
BshVI	ATCGAT	1 cut(s)	180
BsiEI	CGRYCG	2 cut(s)	130, 284
BsiHKAI	GWGCWC	5 cut(s)	697, 1117, 1390, 1662, 1890
BsiHKCI	CYCGRG	1 cut(s)	168
BsiSI	CCGG	8 cut(s)	77, 104, 259, 277, 329, 488, 653, 1677
BslFI	GGGAC	2 cut(s)	311, 1131
BslI	CCNNNNNNNGG	4 cut(s)	279, 293, 1008, 1397
BsmAI	GTCTC	4 cut(s)	613, 915, 1699, 1755
BsmFI	GGGAC	2 cut(s)	311, 1131
BsmI	GAATGC	1 cut(s)	1808
BsnI	GGCC	6 cut(s)	227, 283, 709, 1374, 1733, 1964
Bso31I	GGTCTC	2 cut(s)	613, 1699
BsoBI	CYCGRG	1 cut(s)	168
Bsp1286I	GDGCHC	6 cut(s)	697, 1117, 1297, 1390, 1662, 1890
Bsp143I	GATC	7 cut(s)	79, 337, 412, 570, 920, 1154, 1743
BspANI	GGCC	6 cut(s)	227, 283, 709, 1374, 1733, 1964
BspCNI	CTCAG	4 cut(s)	523, 1572, 1648, 1674
BspDI	ATCGAT	1 cut(s)	180
BspFNI	CGCG	3 cut(s)	7, 315, 1219
BspHI	TCATGA	1 cut(s)	2023
BspLI	GGNNCC	3 cut(s)	81, 327, 2033
BspMI	ACCTGC	1 cut(s)	1582
BspPI	GGATC	4 cut(s)	74, 87, 565, 1738
BspTNI	GGTCTC	2 cut(s)	613, 1699
BsrBI	CCGCTC	1 cut(s)	449
BsrDI	GCAATG	1 cut(s)	1348
BsrFI	RCCGGY	2 cut(s)	258, 652
BsrI	ACTGG	4 cut(s)	735, 969, 1131, 1747
BssAI	RCCGGY	2 cut(s)	258, 652
BssECI	CCNNGG	8 cut(s)	169, 684, 725, 1002, 1445, 1480, 1532, 1795
BssMI	GATC	7 cut(s)	79, 337, 412, 570, 920, 1154, 1743
BssNAI	GTATAC	2 cut(s)	1046, 1423
BssNI	GRCGYC	1 cut(s)	297
BssT1I	CCWWGG	7 cut(s)	684, 725, 1002, 1445, 1480, 1532, 1795
Bst1107I	GTATAC	2 cut(s)	1046, 1423
Bst2UI	CCWGG	1 cut(s)	1509
Bst4CI	ACNGT	5 cut(s)	464, 484, 1041, 1061, 1843
Bst6I	CTCTTC	1 cut(s)	1683
BstACI	GRCGYC	1 cut(s)	297
BstBAI	YACGTR	1 cut(s)	809
BstC8I	GCNNGC	7 cut(s)	260, 537, 707, 711, 1217, 1339, 1966
BstDEI	CTNAG	7 cut(s)	531, 1580, 1656, 1661, 1684, 1778, 1903
BstF5I	GGATG	3 cut(s)	273, 562, 1892
BstFNI	CGCG	3 cut(s)	7, 315, 1219
BstH2I	RGCGCY	1 cut(s)	1795
BstHHI	GCGC	4 cut(s)	7, 137, 315, 1794
BstKTI	GATC	7 cut(s)	82, 340, 415, 573, 923, 1157, 1746
BstMAI	GTCTC	4 cut(s)	613, 915, 1699, 1755
BstMBI	GATC	7 cut(s)	79, 337, 412, 570, 920, 1154, 1743
BstMCI	CGRYCG	2 cut(s)	130, 284
BstMWI	GCNNNNNNNGC	8 cut(s)	141, 210, 252, 752, 1829, 1908, 1933, 1974
BstNI	CCWGG	1 cut(s)	1509
BstNSI	RCATGY	3 cut(s)	362, 1274, 1857
BstSCI	CCNGG	3 cut(s)	327, 1507, 1676
BstSFI	CTRYAG	2 cut(s)	1150, 1467
BstSLI	GKGCMC	2 cut(s)	1297, 1890
BstUI	CGCG	3 cut(s)	7, 315, 1219
BstV1I	GCAGC	9 cut(s)	119, 173, 230, 742, 894, 1453, 1816, 1837, 1920
BstV2I	GAAGAC	1 cut(s)	1408
BstX2I	RGATCY	2 cut(s)	79, 1743
BstXI	CCANNNNNNTGG	1 cut(s)	1382
BstYI	RGATCY	2 cut(s)	79, 1743
BstZ17I	GTATAC	2 cut(s)	1046, 1423
BstZI	CGGCCG	1 cut(s)	281
Bsu15I	ATCGAT	1 cut(s)	180
BsuRI	GGCC	6 cut(s)	227, 283, 709, 1374, 1733, 1964
BsuTUI	ATCGAT	1 cut(s)	180
BtsCI	GGATG	3 cut(s)	273, 562, 1892
BtsI	GCAGTG	2 cut(s)	838, 1297
BtsIMutI	CAGTG	7 cut(s)	480, 838, 1046, 1138, 1297, 1577, 1616
BveI	ACCTGC	1 cut(s)	1582
Cac8I	GCNNGC	7 cut(s)	260, 537, 707, 711, 1217, 1339, 1966
CaiI	CAGNNNCTG	2 cut(s)	584, 964
CciI	TCATGA	1 cut(s)	2023
CciNI	GCGGCCGC	1 cut(s)	281
CfoI	GCGC	4 cut(s)	7, 137, 315, 1794
Cfr10I	RCCGGY	2 cut(s)	258, 652
Cfr13I	GGNCC	2 cut(s)	225, 325
ClaI	ATCGAT	1 cut(s)	180
CseI	GACGC	1 cut(s)	286
Csp6I	GTAC	1 cut(s)	1665
CspAI	ACCGGT	1 cut(s)	652
CviQI	GTAC	1 cut(s)	1665
DdeI	CTNAG	7 cut(s)	531, 1580, 1656, 1661, 1684, 1778, 1903
DpnI	GATC	7 cut(s)	81, 339, 414, 572, 922, 1156, 1745
DpnII	GATC	7 cut(s)	79, 337, 412, 570, 920, 1154, 1743
DraIII	CACNNNGTG	1 cut(s)	809
DriI	GACNNNNNGTC	1 cut(s)	22
EaeI	YGGCCR	1 cut(s)	281
EagI	CGGCCG	1 cut(s)	281
Eam1104I	CTCTTC	1 cut(s)	1683
Eam1105I	GACNNNNNGTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	1683
Ecl136II	GAGCTC	2 cut(s)	1388, 1660
EclXI	CGGCCG	1 cut(s)	281
Eco130I	CCWWGG	7 cut(s)	684, 725, 1002, 1445, 1480, 1532, 1795
Eco147I	AGGCCT	1 cut(s)	1964
Eco24I	GRGCYC	2 cut(s)	1390, 1662
Eco31I	GGTCTC	2 cut(s)	613, 1699
Eco47I	GGWCC	1 cut(s)	325
Eco52I	CGGCCG	1 cut(s)	281
Eco53kI	GAGCTC	2 cut(s)	1388, 1660
Eco57I	CTGAAG	3 cut(s)	1139, 1319, 1913
Eco88I	CYCGRG	1 cut(s)	168
EcoICRI	GAGCTC	2 cut(s)	1388, 1660
EcoO109I	RGGNCCY	1 cut(s)	325
EcoRI	GAATTC	1 cut(s)	1348
EcoRII	CCWGG	1 cut(s)	1507
EcoT14I	CCWWGG	7 cut(s)	684, 725, 1002, 1445, 1480, 1532, 1795
EcoT22I	ATGCAT	1 cut(s)	1810
EcoT38I	GRGCYC	2 cut(s)	1390, 1662
ErhI	CCWWGG	7 cut(s)	684, 725, 1002, 1445, 1480, 1532, 1795
FalI	AAGNNNNNCTT	2 cut(s)	1751, 1783
FaqI	GGGAC	2 cut(s)	311, 1131
FauI	CCCGC	1 cut(s)	108
FbaI	TGATCA	1 cut(s)	412
FblI	GTMKAC	3 cut(s)	1045, 1422, 1722
FokI	GGATG	3 cut(s)	260, 569, 1879
FriOI	GRGCYC	2 cut(s)	1390, 1662
FspBI	CTAG	7 cut(s)	525, 1311, 1446, 1481, 1533, 1796, 1824
GlaI	GCGC	4 cut(s)	6, 136, 314, 1793
GsaI	CCCAGC	1 cut(s)	879
HaeII	RGCGCY	1 cut(s)	1795
HaeIII	GGCC	6 cut(s)	227, 283, 709, 1374, 1733, 1964
HapII	CCGG	8 cut(s)	77, 104, 259, 277, 329, 488, 653, 1677
HgaI	GACGC	1 cut(s)	286
HhaI	GCGC	4 cut(s)	7, 137, 315, 1794
Hin1I	GRCGYC	1 cut(s)	297
Hin6I	GCGC	4 cut(s)	5, 135, 313, 1792
HinP1I	GCGC	4 cut(s)	5, 135, 313, 1792
HincII	GTYRAC	1 cut(s)	1163
HindII	GTYRAC	1 cut(s)	1163
HindIII	AAGCTT	3 cut(s)	1301, 1772, 1900
HpaII	CCGG	8 cut(s)	77, 104, 259, 277, 329, 488, 653, 1677
HphI	GGTGA	3 cut(s)	563, 667, 1497
Hpy166II	GTNNAC	5 cut(s)	1046, 1163, 1423, 1723, 1888
Hpy188I	TCNGA	4 cut(s)	613, 1119, 1953, 2036
Hpy188III	TCNNGA	7 cut(s)	308, 335, 525, 914, 959, 1759, 2024
Hpy8I	GTNNAC	5 cut(s)	1046, 1163, 1423, 1723, 1888
HpyAV	CCTTC	4 cut(s)	485, 1114, 1411, 1619
HpyCH4III	ACNGT	5 cut(s)	464, 484, 1041, 1061, 1843
HpyCH4IV	ACGT	1 cut(s)	808
HpyF10VI	GCNNNNNNNGC	8 cut(s)	141, 210, 252, 752, 1829, 1908, 1933, 1974
HpyF3I	CTNAG	7 cut(s)	531, 1580, 1656, 1661, 1684, 1778, 1903
HpySE526I	ACGT	1 cut(s)	808
Hsp92I	GRCGYC	1 cut(s)	297
HspAI	GCGC	4 cut(s)	5, 135, 313, 1792
KroI	GCCGGC	1 cut(s)	258
KroNI	GCCGGC	1 cut(s)	260
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	7 cut(s)	79, 337, 412, 570, 920, 1154, 1743
LmnI	GCTCC	5 cut(s)	446, 1385, 1393, 1528, 1799
Lsp1109I	GCAGC	9 cut(s)	119, 173, 230, 742, 894, 1453, 1816, 1837, 1920
LweI	GCATC	5 cut(s)	222, 355, 1795, 1876, 1944
MaeI	CTAG	7 cut(s)	525, 1311, 1446, 1481, 1533, 1796, 1824
MaeII	ACGT	1 cut(s)	808
MaeIII	GTNAC	4 cut(s)	237, 476, 506, 1450
MalI	GATC	7 cut(s)	81, 339, 414, 572, 922, 1156, 1745
MbiI	CCGCTC	1 cut(s)	449
MboI	GATC	7 cut(s)	79, 337, 412, 570, 920, 1154, 1743
MboII	GAAGA	8 cut(s)	386, 930, 1413, 1494, 1605, 1662, 1665, 1700
MflI	RGATCY	2 cut(s)	79, 1743
MhlI	GDGCHC	6 cut(s)	697, 1117, 1297, 1390, 1662, 1890
MlyI	GAGTC	4 cut(s)	14, 245, 784, 1481
MmeI	TCCRAC	1 cut(s)	2059
MnlI	CCTC	9 cut(s)	37, 164, 547, 968, 1183, 1456, 1684, 1723, 1906
Mph1103I	ATGCAT	1 cut(s)	1810
MreI	CGCCGGCG	1 cut(s)	258
MroNI	GCCGGC	1 cut(s)	258
MroXI	GAANNNNTTC	2 cut(s)	824, 1926
MseI	TTAA	2 cut(s)	321, 1590
MslI	CAYNNNNRTG	3 cut(s)	363, 1275, 2022
MspA1I	CMGCKG	5 cut(s)	132, 746, 755, 885, 1933
MspI	CCGG	8 cut(s)	77, 104, 259, 277, 329, 488, 653, 1677
MspR9I	CCNGG	3 cut(s)	329, 1509, 1678
Mva1269I	GAATGC	1 cut(s)	1808
MvaI	CCWGG	1 cut(s)	1509
MvnI	CGCG	3 cut(s)	7, 315, 1219
MwoI	GCNNNNNNNGC	8 cut(s)	141, 210, 252, 752, 1829, 1908, 1933, 1974
NaeI	GCCGGC	1 cut(s)	260
NciI	CCSGG	2 cut(s)	329, 1678
NdeII	GATC	7 cut(s)	79, 337, 412, 570, 920, 1154, 1743
NgoMIV	GCCGGC	1 cut(s)	258
NlaIV	GGNNCC	3 cut(s)	81, 327, 2033
NmeAIII	GCCGAG	1 cut(s)	1994
NmuCI	GTSAC	2 cut(s)	237, 1450
NotI	GCGGCCGC	1 cut(s)	281
NsiI	ATGCAT	1 cut(s)	1810
NspI	RCATGY	3 cut(s)	362, 1274, 1857
PagI	TCATGA	1 cut(s)	2023
PceI	AGGCCT	1 cut(s)	1964
PciI	ACATGT	1 cut(s)	1270
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PctI	GAATGC	1 cut(s)	1808
PdiI	GCCGGC	1 cut(s)	260
PdmI	GAANNNNTTC	2 cut(s)	824, 1926
PfeI	GAWTC	6 cut(s)	68, 116, 660, 749, 935, 1138
PflMI	CCANNNNNTGG	1 cut(s)	1008
PfoI	TCCNGGA	1 cut(s)	1676
PinAI	ACCGGT	1 cut(s)	652
PleI	GAGTC	4 cut(s)	14, 244, 784, 1480
PpsI	GAGTC	4 cut(s)	14, 244, 784, 1480
Ppu21I	YACGTR	1 cut(s)	809
PpuMI	RGGWCCY	1 cut(s)	325
PscI	ACATGT	1 cut(s)	1270
Psp124BI	GAGCTC	2 cut(s)	1390, 1662
Psp5II	RGGWCCY	1 cut(s)	325
Psp6I	CCWGG	1 cut(s)	1507
PspFI	CCCAGC	1 cut(s)	875
PspGI	CCWGG	1 cut(s)	1507
PspN4I	GGNNCC	3 cut(s)	81, 327, 2033
PspPI	GGNCC	2 cut(s)	225, 325
PspPPI	RGGWCCY	1 cut(s)	325
PstNI	CAGNNNCTG	2 cut(s)	584, 964
PsuI	RGATCY	2 cut(s)	79, 1743
PvuII	CAGCTG	3 cut(s)	746, 755, 1933
RsaI	GTAC	1 cut(s)	1666
RsaNI	GTAC	1 cut(s)	1665
RseI	CAYNNNNRTG	3 cut(s)	363, 1275, 2022
SacI	GAGCTC	2 cut(s)	1390, 1662
SaqAI	TTAA	2 cut(s)	321, 1590
Sau3AI	GATC	7 cut(s)	79, 337, 412, 570, 920, 1154, 1743
Sau96I	GGNCC	2 cut(s)	225, 325
SchI	GAGTC	4 cut(s)	14, 245, 784, 1481
ScrFI	CCNGG	3 cut(s)	329, 1509, 1678
SduI	GDGCHC	6 cut(s)	697, 1117, 1297, 1390, 1662, 1890
SfaNI	GCATC	5 cut(s)	222, 355, 1795, 1876, 1944
SfcI	CTRYAG	2 cut(s)	1150, 1467
SgrAI	CRCCGGYG	1 cut(s)	258
SinI	GGWCC	1 cut(s)	325
SmiMI	CAYNNNNRTG	3 cut(s)	363, 1275, 2022
SmlI	CTYRAG	2 cut(s)	696, 1897
SmoI	CTYRAG	2 cut(s)	696, 1897
SseBI	AGGCCT	1 cut(s)	1964
SspMI	CTAG	7 cut(s)	525, 1311, 1446, 1481, 1533, 1796, 1824
SstI	GAGCTC	2 cut(s)	1390, 1662
StuI	AGGCCT	1 cut(s)	1964
StyD4I	CCNGG	3 cut(s)	327, 1507, 1676
StyI	CCWWGG	7 cut(s)	684, 725, 1002, 1445, 1480, 1532, 1795
TaaI	ACNGT	5 cut(s)	464, 484, 1041, 1061, 1843
TaiI	ACGT	1 cut(s)	811
TaqI	TCGA	7 cut(s)	66, 180, 334, 778, 863, 869, 973
TaqII	GACCGA	1 cut(s)	595
TatI	WGTACW	1 cut(s)	1664
TauI	GCSGC	7 cut(s)	124, 167, 258, 283, 286, 452, 1914
TfiI	GAWTC	6 cut(s)	68, 116, 660, 749, 935, 1138
Tru1I	TTAA	2 cut(s)	321, 1590
Tru9I	TTAA	2 cut(s)	321, 1590
TscAI	CASTG	7 cut(s)	487, 838, 1046, 1138, 1297, 1584, 1623
TseFI	GTSAC	2 cut(s)	237, 1450
TseI	GCWGC	9 cut(s)	132, 186, 243, 755, 882, 1441, 1829, 1850, 1933
Tsp45I	GTSAC	2 cut(s)	237, 1450
TspRI	CASTG	7 cut(s)	487, 838, 1046, 1138, 1297, 1584, 1623
Van91I	CCANNNNNTGG	1 cut(s)	1008
VneI	GTGCAC	1 cut(s)	1886
VpaK11BI	GGWCC	1 cut(s)	325
XapI	RAATTY	4 cut(s)	631, 670, 969, 1348
XbaI	TCTAGA	1 cut(s)	524
XceI	RCATGY	3 cut(s)	362, 1274, 1857
XmaJI	CCTAGG	4 cut(s)	1445, 1480, 1532, 1795
XmiI	GTMKAC	3 cut(s)	1045, 1422, 1722
XmnI	GAANNNNTTC	2 cut(s)	824, 1926
XspI	CTAG	7 cut(s)	525, 1311, 1446, 1481, 1533, 1796, 1824
Zsp2I	ATGCAT	1 cut(s)	1810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.