Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0016338

Physical Location & Seq

Genomic Coordinates Forward (+)

62788583 .. 62791074

Gene Structure 2492 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00270150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2073 bp

ATGACTGAGCTCCCAATGGCGCGTGAAACAGACGACTCGTCCTCTCCCCCAAACAAACGCCTGAAAACCCTAAATCCCCAAACCGAATCCCAATCGGATCCAAATCAACCCGAAACCCCGCCGGAAACCGATGATTCACCGCCCGAACGCTGCGCTATTTGCTTCTTGGACGACGGCAAAGCCGCCCGAGGCAAAATCGACTGCTGCGACCACTACTTCTGCTTCTTGTGCATCAAAGAATGGGCCAAGACCGAGTCACGGTGCCCAATGTGTGCCGGCGGCGGTTCAACACCATCCGTCGACCGCCGAAAGTCGGCGTCTTTGTCCGTGAGCGCATCGTTAGGGTCCCGGTTCGAGATCAGGTCAGTATCAATTTTGGGGAATAAAAGTGGGCATGTTGATGCTTATGAAGAAGTTGCGTGTAATGTGTGTAGCTCTATGGTAGATGATCATTTTATGTTGCTCTGTGATCTTTGCGATGGAGCGGCTCATACTTACTGTGTTGGGCTTGGTTATACTGTGCCTGAAGGTGATTGGTTTTGCAATGACTGCATTGCTTCTAGGCCTGAGCTTGCTAATGTGAATGGTGGCGATGATGAATGTGGTATGATCCCAACAGAAGCTGTGCCTGTGCCTTCTGTCTCGGTATGTGATATTGTAAGAGAATCGAATAGCTCAGCTGTTGAAAGACCTATAAGAATCACTCCAAATCCAAATCAGTGTTCGGTTGCTCCTCAAGTTGCTAGGCCAGCAAAAGCGCCACCAAGGGTGGCCAGTATATCAGCTGAATCGGCTGCAAGAACATTGGATAGGTGTCGAAATGTGCAGACTCGCATACACACACTTCGTGAGAATTGGAATGGCTTCCGGAGTGGTGCATTGAGCTTCCCTGCCAGTTCATCGAAATTGAAAGCTAGCTGCAGCAGTAGTCAAGAACATAAAAATGGTGTAATGACTCGTGAAAGATCAGGCCAAACAGAATCTTCATCTTCTCCAACTCATCAGCAACTAGAAAATCGAGATGGTTGTGACCCCCATGATATCAACAAGGCATGGAAAATGCTGGAAAAGGCAAAGTCAAAACAGTGTATACATAAAAAGAACAGCAGTGGTGTTCAGTTGTTGCAGTTCTCGAAACTTCCTTCTAGCAGAACAAGTGCTTCTAAGGAACCAAATCCATGTCCTGATATATCAGGTCAACCACAATCCTCGTCTTTCACAGGTTGTCAGCAGCAGCAAAATCAAGTTGGTTGTGGTTCGCGTGATATTGACAATGCATGGAAAATGATGGATAGGGCAAAGTTGAAACAACATGTTCATGAAAACACCAGCAGTCCCCTGAAGCTTCCTTCTAGGAAAGCAAATGCTTCAGAAGAAGCAAGTAATGTGAATTCAAGTTTCGATACAATGAAAAGCCAGCAACTTGGAGCTCTGAATCAGGGAAGACCAGGAATGGAGAAGGTCTACAAAGGTAAGGAAAGGCAGTCTAGGGTCACAACTCAGGAGGCTGTAGAGTCAATCCTGGGCATTTCATGTAGTAATTCTTCACCAGGATTATTTATACCTCCATTTCCTAGGAAAATAAATAGTTCAGCTTCATTACAGAAAAATCAAGCTGCACTAGGTATTGTTACTGAGCAAAACGGTTCTGCCTCTTCAATGATGGAAGGAACTTCTAATTCTTATTGTGGTAAACCTGAGCTCAGTACATCTTCTTCCGGAAACTTAGAAGAGGTCTGTGTGGAAAGCAGCAGAGCAAGAAAAGTTGACGATGAAGCCAAAAGTGAGATCCAGTCTCTTGTCAAGATGAACTTGAAGCTTTTAAGCAAAGACCAGCGCATAGGAGTTGATGCATTTAAACAAATTGCAAGGGCTGCCACACATACTGTCTTGGCTGCATGTGGTTTAGAACATCATCACAAGTCCGCCTTGCATTCCTTCCCAAGCTTAGTATGCTGCCACACCGAGCAGCTTCAGCTGCCACATAAATCAAATTTGATGCGTAAGGCCTGCCGAGATTGCTTTTATGGGTTTGTGAAAGATGTTGTCAGTTCTGATCCTGCAAAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0006139 GO:0006351 GO:0006366 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0019904 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0070063 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD zf-RING_2

Protein Analysis

690

Amino Acids

74.9

Weight (kDa)

7.97

Isoelectric Point (pI)

53.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	50 - 91	2.7e-06	Ring finger domain
PHD	PF00628	141 - 184	2.3e-08	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016338)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g13310
malus_domestica	MD06G1206300.v1.1
prunus_persica	Prupe.5G210700_v2.0.a1 Prupe.5G210700_v2.0.a1
pyrus_communis	pycom06g18420
rosa_chinensis	RchiOBHm_Chr7g0183831
rosa_laevigata	RLG00000005017
rosa_multiflora	Rmu_sc0013966.1_g000004
rosa_roxburghii	Rroxscaffold_3G00270150
rosa_rugosa	Rorug06G0461100
rosa_samantha	Rh7AG061800 Rh7BG061900 Rh7CG063400 Rh7DG061600
rosa_wichuraiana	Rw7G005110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	261
AccBSI	CCGCTC	1 cut(s)	485
AccI	GTMKAC	3 cut(s)	300, 1090, 1464
AccII	CGCG	2 cut(s)	22, 1261
AccIII	TCCGGA	2 cut(s)	867, 1718
AciI	CCGC	8 cut(s)	119, 140, 183, 279, 282, 304, 485, 1926
AclWI	GGATC	5 cut(s)	92, 105, 604, 1783, 2051
AcoI	YGGCCR	1 cut(s)	771
AcsI	RAATTY	2 cut(s)	1390, 1993
AcuI	CTGAAG	4 cut(s)	546, 1353, 1361, 1958
AcyI	GRCGYC	1 cut(s)	317
AdeI	CACNNNGTG	1 cut(s)	848
AfaI	GTAC	1 cut(s)	1708
AfiI	CCNNNNNNNGG	2 cut(s)	258, 313
AflIII	ACRYGT	1 cut(s)	1312
AgsI	TTSAA	7 cut(s)	288, 686, 910, 1306, 1395, 1659, 1816
AhdI	GACNNNNNGTC	1 cut(s)	37
AjnI	CCWGG	3 cut(s)	1447, 1521, 1549
AjuI	GAANNNNNNNTTGG	2 cut(s)	706, 738
Alw21I	GWGCWC	3 cut(s)	12, 1432, 1704
Alw26I	GTCTC	2 cut(s)	646, 1800
AlwI	GGATC	5 cut(s)	92, 105, 604, 1783, 2051
AlwNI	CAGNNNCTG	1 cut(s)	623
Ama87I	CYCGRG	1 cut(s)	186
Aor13HI	TCCGGA	2 cut(s)	867, 1718
AoxI	GGCC	6 cut(s)	243, 563, 746, 771, 970, 2007
ApoI	RAATTY	2 cut(s)	1390, 1993
Asp700I	GAANNNNTTC	1 cut(s)	863
AspA2I	CCTAGG	1 cut(s)	1574
AspLEI	GCGC	5 cut(s)	22, 155, 335, 760, 1839
AspS9I	GGNCC	2 cut(s)	243, 345
AsuC2I	CCSGG	1 cut(s)	349
AsuHPI	GGTGA	3 cut(s)	129, 542, 1539
AsuNHI	GCTAGC	1 cut(s)	914
AvaI	CYCGRG	1 cut(s)	186
AvaII	GGWCC	1 cut(s)	345
AvrII	CCTAGG	1 cut(s)	1574
BaeGI	GKGCMC	1 cut(s)	266
BalI	TGGCCA	1 cut(s)	773
BamHI	GGATCC	1 cut(s)	97
BanI	GGYRCC	1 cut(s)	261
BanII	GRGCYC	3 cut(s)	12, 1432, 1704
BarI	GAAGNNNNNNTAC	4 cut(s)	1528, 1560, 1699, 1731
BauI	CACGAG	1 cut(s)	957
BbsI	GAAGAC	1 cut(s)	1450
Bbv12I	GWGCWC	3 cut(s)	12, 1432, 1704
BccI	CCATC	5 cut(s)	301, 473, 1016, 1282, 1657
BceAI	ACGGC	1 cut(s)	190
BciT130I	CCWGG	3 cut(s)	1449, 1523, 1551
BclI	TGATCA	1 cut(s)	448
BcnI	CCSGG	1 cut(s)	349
BcoDI	GTCTC	2 cut(s)	646, 1800
BfaI	CTAG	9 cut(s)	561, 744, 915, 1010, 1146, 1353, 1488, 1575, 1622
BfmI	CTRYAG	2 cut(s)	919, 1509
BfoI	RGCGCY	1 cut(s)	761
BlnI	CCTAGG	1 cut(s)	1574
BlpI	GCTNAGC	1 cut(s)	676
Bme1390I	CCNGG	4 cut(s)	349, 1449, 1523, 1551
Bme18I	GGWCC	1 cut(s)	345
BmeRI	GACNNNNNGTC	1 cut(s)	37
BmeT110I	CYCGRG	1 cut(s)	186
BmgT120I	GGNCC	2 cut(s)	243, 345
BmiI	GGNNCC	5 cut(s)	99, 263, 346, 347, 1170
BmrFI	CCNGG	4 cut(s)	349, 1449, 1523, 1551
BmsI	GCATC	5 cut(s)	240, 344, 391, 1840, 1989
BmtI	GCTAGC	1 cut(s)	918
BpiI	GAAGAC	1 cut(s)	1450
Bpu10I	CCTNAGC	2 cut(s)	567, 1698
Bpu1102I	GCTNAGC	1 cut(s)	676
BpuEI	CTTGAG	1 cut(s)	720
BpuMI	CCSGG	1 cut(s)	349
BsaBI	GATNNNNATC	1 cut(s)	102
BsaHI	GRCGYC	1 cut(s)	317
BsaJI	CCNNGG	4 cut(s)	187, 764, 1522, 1574
BsaWI	WCCGGW	2 cut(s)	867, 1718
Bsc4I	CCNNNNNNNGG	2 cut(s)	258, 313
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	3 cut(s)	774, 894, 1792
Bse3DI	GCAATG	2 cut(s)	550, 552
Bse8I	GATNNNNATC	1 cut(s)	102
BseAI	TCCGGA	2 cut(s)	867, 1718
BseBI	CCWGG	3 cut(s)	1449, 1523, 1551
BseDI	CCNNGG	4 cut(s)	187, 764, 1522, 1574
BseGI	GGATG	1 cut(s)	293
BseJI	GATNNNNATC	1 cut(s)	102
BseLI	CCNNNNNNNGG	2 cut(s)	258, 313
BseMI	GCAATG	2 cut(s)	550, 552
BseMII	CTCAG	6 cut(s)	558, 690, 1514, 1626, 1689, 1717
BseNI	ACTGG	3 cut(s)	774, 894, 1792
BseRI	GAGGAG	1 cut(s)	723
BseSI	GKGCMC	1 cut(s)	266
BsgI	GTGCAG	2 cut(s)	845, 1602
Bsh1236I	CGCG	2 cut(s)	22, 1261
Bsh1285I	CGRYCG	1 cut(s)	304
BshFI	GGCC	6 cut(s)	245, 565, 748, 773, 972, 2009
BshNI	GGYRCC	1 cut(s)	261
BsiEI	CGRYCG	1 cut(s)	304
BsiHKAI	GWGCWC	3 cut(s)	12, 1432, 1704
BsiHKCI	CYCGRG	1 cut(s)	186
BsiSI	CCGG	5 cut(s)	122, 276, 349, 868, 1719
BslFI	GGGAC	2 cut(s)	331, 1320
BslI	CCNNNNNNNGG	2 cut(s)	258, 313
BsmAI	GTCTC	2 cut(s)	646, 1800
BsmFI	GGGAC	2 cut(s)	331, 1320
BsmI	GAATGC	1 cut(s)	1933
BsnI	GGCC	6 cut(s)	245, 565, 748, 773, 972, 2009
BsoBI	CYCGRG	1 cut(s)	186
Bsp1286I	GDGCHC	4 cut(s)	12, 266, 1432, 1704
Bsp13I	TCCGGA	2 cut(s)	867, 1718
Bsp143I	GATC	8 cut(s)	97, 357, 448, 469, 609, 965, 1788, 2056
Bsp1720I	GCTNAGC	1 cut(s)	676
BspACI	CCGC	8 cut(s)	119, 140, 183, 279, 282, 304, 485, 1926
BspANI	GGCC	6 cut(s)	245, 565, 748, 773, 972, 2009
BspCNI	CTCAG	6 cut(s)	559, 689, 1513, 1627, 1690, 1716
BspEI	TCCGGA	2 cut(s)	867, 1718
BspFNI	CGCG	2 cut(s)	22, 1261
BspHI	TCATGA	2 cut(s)	1318, 2069
BspLI	GGNNCC	5 cut(s)	99, 263, 346, 347, 1170
BspMAI	CTGCAG	1 cut(s)	923
BspOI	GCTAGC	1 cut(s)	918
BspPI	GGATC	5 cut(s)	92, 105, 604, 1783, 2051
BspT107I	GGYRCC	1 cut(s)	261
BsrBI	CCGCTC	1 cut(s)	485
BsrDI	GCAATG	2 cut(s)	550, 552
BsrFI	RCCGGY	1 cut(s)	275
BsrI	ACTGG	3 cut(s)	774, 894, 1792
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	4 cut(s)	187, 764, 1522, 1574
BssMI	GATC	8 cut(s)	97, 357, 448, 469, 609, 965, 1788, 2056
BssNAI	GTATAC	1 cut(s)	1091
BssNI	GRCGYC	1 cut(s)	317
BssSI	CACGAG	1 cut(s)	957
BssT1I	CCWWGG	2 cut(s)	764, 1574
Bst1107I	GTATAC	1 cut(s)	1091
Bst2BI	CACGAG	1 cut(s)	957
Bst2UI	CCWGG	3 cut(s)	1449, 1523, 1551
Bst4CI	ACNGT	6 cut(s)	261, 500, 520, 1086, 1646, 1888
Bst6I	CTCTTC	2 cut(s)	1660, 1725
BstACI	GRCGYC	1 cut(s)	317
BstAPI	GCANNNNNTGC	2 cut(s)	549, 1874
BstC8I	GCNNGC	6 cut(s)	277, 573, 750, 916, 1418, 2011
BstF5I	GGATG	1 cut(s)	293
BstFNI	CGCG	2 cut(s)	22, 1261
BstH2I	RGCGCY	1 cut(s)	761
BstHHI	GCGC	5 cut(s)	22, 155, 335, 760, 1839
BstKTI	GATC	8 cut(s)	100, 360, 451, 472, 612, 968, 1791, 2059
BstMAI	GTCTC	2 cut(s)	646, 1800
BstMBI	GATC	8 cut(s)	97, 357, 448, 469, 609, 965, 1788, 2056
BstMCI	CGRYCG	1 cut(s)	304
BstNI	CCWGG	3 cut(s)	1449, 1523, 1551
BstNSI	RCATGY	3 cut(s)	398, 1316, 1902
BstSCI	CCNGG	4 cut(s)	347, 1447, 1521, 1549
BstSFI	CTRYAG	2 cut(s)	919, 1509
BstSLI	GKGCMC	1 cut(s)	266
BstUI	CGCG	2 cut(s)	22, 1261
BstV2I	GAAGAC	1 cut(s)	1450
BstX2I	RGATCY	2 cut(s)	97, 1788
BstXI	CCANNNNNNTGG	1 cut(s)	1424
BstYI	RGATCY	2 cut(s)	97, 1788
BstZ17I	GTATAC	1 cut(s)	1091
BsuRI	GGCC	6 cut(s)	245, 565, 748, 773, 972, 2009
BtgZI	GCGATG	2 cut(s)	492, 606
BtsCI	GGATG	1 cut(s)	293
BtsI	GCAGTG	1 cut(s)	1114
BtsIMutI	CAGTG	3 cut(s)	725, 1091, 1114
Cac8I	GCNNGC	6 cut(s)	277, 573, 750, 916, 1418, 2011
CaiI	CAGNNNCTG	1 cut(s)	623
CciI	TCATGA	2 cut(s)	1318, 2069
CfoI	GCGC	5 cut(s)	22, 155, 335, 760, 1839
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	2 cut(s)	243, 345
CseI	GACGC	1 cut(s)	306
Csp6I	GTAC	1 cut(s)	1707
CviQI	GTAC	1 cut(s)	1707
DpnI	GATC	8 cut(s)	99, 359, 450, 471, 611, 967, 1790, 2058
DpnII	GATC	8 cut(s)	97, 357, 448, 469, 609, 965, 1788, 2056
DraI	TTTAAA	1 cut(s)	1858
DraIII	CACNNNGTG	1 cut(s)	848
DriI	GACNNNNNGTC	1 cut(s)	37
EaeI	YGGCCR	1 cut(s)	771
Eam1104I	CTCTTC	2 cut(s)	1660, 1725
Eam1105I	GACNNNNNGTC	1 cut(s)	37
EarI	CTCTTC	2 cut(s)	1660, 1725
EciI	GGCGGA	1 cut(s)	1915
Ecl136II	GAGCTC	3 cut(s)	10, 1430, 1702
Eco130I	CCWWGG	2 cut(s)	764, 1574
Eco147I	AGGCCT	2 cut(s)	565, 2009
Eco24I	GRGCYC	3 cut(s)	12, 1432, 1704
Eco32I	GATATC	1 cut(s)	1042
Eco47I	GGWCC	1 cut(s)	345
Eco53kI	GAGCTC	3 cut(s)	10, 1430, 1702
Eco57I	CTGAAG	4 cut(s)	546, 1353, 1361, 1958
Eco88I	CYCGRG	1 cut(s)	186
EcoICRI	GAGCTC	3 cut(s)	10, 1430, 1702
EcoO109I	RGGNCCY	1 cut(s)	345
EcoRI	GAATTC	1 cut(s)	1390
EcoRII	CCWGG	3 cut(s)	1447, 1521, 1549
EcoRV	GATATC	1 cut(s)	1042
EcoT14I	CCWWGG	2 cut(s)	764, 1574
EcoT22I	ATGCAT	2 cut(s)	1279, 1855
EcoT38I	GRGCYC	3 cut(s)	12, 1432, 1704
ErhI	CCWWGG	2 cut(s)	764, 1574
FalI	AAGNNNNNCTT	4 cut(s)	1796, 1828, 1913, 1945
FaqI	GGGAC	2 cut(s)	331, 1320
FauI	CCCGC	1 cut(s)	126
FbaI	TGATCA	1 cut(s)	448
FblI	GTMKAC	3 cut(s)	300, 1090, 1464
FokI	GGATG	1 cut(s)	280
FriOI	GRGCYC	3 cut(s)	12, 1432, 1704
FspBI	CTAG	9 cut(s)	561, 744, 915, 1010, 1146, 1353, 1488, 1575, 1622
GlaI	GCGC	5 cut(s)	21, 154, 334, 759, 1838
HaeII	RGCGCY	1 cut(s)	761
HaeIII	GGCC	6 cut(s)	245, 565, 748, 773, 972, 2009
HapII	CCGG	5 cut(s)	122, 276, 349, 868, 1719
HgaI	GACGC	1 cut(s)	306
HhaI	GCGC	5 cut(s)	22, 155, 335, 760, 1839
Hin1I	GRCGYC	1 cut(s)	317
Hin6I	GCGC	5 cut(s)	20, 153, 333, 758, 1837
HinP1I	GCGC	5 cut(s)	20, 153, 333, 758, 1837
HincII	GTYRAC	3 cut(s)	301, 1199, 1768
HindII	GTYRAC	3 cut(s)	301, 1199, 1768
HindIII	AAGCTT	3 cut(s)	1343, 1817, 1945
HpaII	CCGG	5 cut(s)	122, 276, 349, 868, 1719
HphI	GGTGA	3 cut(s)	129, 542, 1539
Hpy166II	GTNNAC	6 cut(s)	301, 1091, 1199, 1465, 1694, 1768
Hpy188I	TCNGA	4 cut(s)	97, 1372, 1434, 2056
Hpy8I	GTNNAC	6 cut(s)	301, 1091, 1199, 1465, 1694, 1768
Hpy99I	CGWCG	2 cut(s)	176, 302
HpyAV	CCTTC	7 cut(s)	521, 645, 1152, 1359, 1453, 1661, 1948
HpyCH4III	ACNGT	6 cut(s)	261, 500, 520, 1086, 1646, 1888
Hsp92I	GRCGYC	1 cut(s)	317
HspAI	GCGC	5 cut(s)	20, 153, 333, 758, 1837
KflI	GGGWCCC	1 cut(s)	345
Kpn2I	TCCGGA	2 cut(s)	867, 1718
KroI	GCCGGC	1 cut(s)	275
KroNI	GCCGGC	1 cut(s)	277
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	8 cut(s)	97, 357, 448, 469, 609, 965, 1788, 2056
LmnI	GCTCC	4 cut(s)	15, 482, 736, 1427
LweI	GCATC	5 cut(s)	240, 344, 391, 1840, 1989
MaeI	CTAG	9 cut(s)	561, 744, 915, 1010, 1146, 1353, 1488, 1575, 1622
MaeIII	GTNAC	4 cut(s)	255, 1028, 1492, 1630
MalI	GATC	8 cut(s)	99, 359, 450, 471, 611, 967, 1790, 2058
MbiI	CCGCTC	1 cut(s)	485
MboI	GATC	8 cut(s)	97, 357, 448, 469, 609, 965, 1788, 2056
MflI	RGATCY	2 cut(s)	97, 1788
MhlI	GDGCHC	4 cut(s)	12, 266, 1432, 1704
MlsI	TGGCCA	1 cut(s)	773
MluCI	AATT	8 cut(s)	372, 853, 905, 1390, 1540, 1678, 1863, 1993
MluNI	TGGCCA	1 cut(s)	773
MlyI	GAGTC	5 cut(s)	29, 263, 823, 949, 1523
MmeI	TCCRAC	1 cut(s)	1019
MnlI	CCTC	8 cut(s)	52, 182, 744, 1219, 1498, 1575, 1663, 1726
Mox20I	TGGCCA	1 cut(s)	773
Mph1103I	ATGCAT	2 cut(s)	1279, 1855
MroI	TCCGGA	2 cut(s)	867, 1718
MroNI	GCCGGC	1 cut(s)	275
MroXI	GAANNNNTTC	1 cut(s)	863
MscI	TGGCCA	1 cut(s)	773
MseI	TTAA	2 cut(s)	1823, 1857
MslI	CAYNNNNRTG	3 cut(s)	399, 942, 1317
Msp20I	TGGCCA	1 cut(s)	773
MspA1I	CMGCKG	3 cut(s)	680, 785, 1978
MspI	CCGG	5 cut(s)	122, 276, 349, 868, 1719
MspR9I	CCNGG	4 cut(s)	349, 1449, 1523, 1551
Mva1269I	GAATGC	1 cut(s)	1933
MvaI	CCWGG	3 cut(s)	1449, 1523, 1551
MvnI	CGCG	2 cut(s)	22, 1261
NaeI	GCCGGC	1 cut(s)	277
NciI	CCSGG	1 cut(s)	349
NdeII	GATC	8 cut(s)	97, 357, 448, 469, 609, 965, 1788, 2056
NgoMIV	GCCGGC	1 cut(s)	275
NheI	GCTAGC	1 cut(s)	914
NlaIV	GGNNCC	5 cut(s)	99, 263, 346, 347, 1170
NmeAIII	GCCGAG	1 cut(s)	2039
NmuCI	GTSAC	3 cut(s)	255, 1028, 1492
NsiI	ATGCAT	2 cut(s)	1279, 1855
NspI	RCATGY	3 cut(s)	398, 1316, 1902
PagI	TCATGA	2 cut(s)	1318, 2069
PceI	AGGCCT	2 cut(s)	565, 2009
PciI	ACATGT	1 cut(s)	1312
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PctI	GAATGC	1 cut(s)	1933
PdiI	GCCGGC	1 cut(s)	277
PdmI	GAANNNNTTC	1 cut(s)	863
PfeI	GAWTC	7 cut(s)	86, 134, 665, 699, 788, 980, 1435
PflFI	GACNNNGTC	1 cut(s)	253
PleI	GAGTC	5 cut(s)	29, 262, 823, 949, 1522
PpsI	GAGTC	5 cut(s)	29, 262, 823, 949, 1522
PpuMI	RGGWCCY	1 cut(s)	345
PscI	ACATGT	1 cut(s)	1312
Psp124BI	GAGCTC	3 cut(s)	12, 1432, 1704
Psp5II	RGGWCCY	1 cut(s)	345
Psp6I	CCWGG	3 cut(s)	1447, 1521, 1549
PspGI	CCWGG	3 cut(s)	1447, 1521, 1549
PspN4I	GGNNCC	5 cut(s)	99, 263, 346, 347, 1170
PspPI	GGNCC	2 cut(s)	243, 345
PspPPI	RGGWCCY	1 cut(s)	345
PstI	CTGCAG	1 cut(s)	923
PstNI	CAGNNNCTG	1 cut(s)	623
PsuI	RGATCY	2 cut(s)	97, 1788
PsyI	GACNNNGTC	1 cut(s)	253
PvuII	CAGCTG	3 cut(s)	680, 785, 1978
RsaI	GTAC	1 cut(s)	1708
RsaNI	GTAC	1 cut(s)	1707
RseI	CAYNNNNRTG	3 cut(s)	399, 942, 1317
SacI	GAGCTC	3 cut(s)	12, 1432, 1704
SalI	GTCGAC	1 cut(s)	299
SaqAI	TTAA	2 cut(s)	1823, 1857
Sau3AI	GATC	8 cut(s)	97, 357, 448, 469, 609, 965, 1788, 2056
Sau96I	GGNCC	2 cut(s)	243, 345
SchI	GAGTC	5 cut(s)	29, 263, 823, 949, 1523
ScrFI	CCNGG	4 cut(s)	349, 1449, 1523, 1551
SduI	GDGCHC	4 cut(s)	12, 266, 1432, 1704
SfaNI	GCATC	5 cut(s)	240, 344, 391, 1840, 1989
SfcI	CTRYAG	2 cut(s)	919, 1509
SinI	GGWCC	1 cut(s)	345
SmiMI	CAYNNNNRTG	3 cut(s)	399, 942, 1317
SmlI	CTYRAG	1 cut(s)	735
SmoI	CTYRAG	1 cut(s)	735
Sse9I	AATT	8 cut(s)	372, 853, 905, 1390, 1540, 1678, 1863, 1993
SseBI	AGGCCT	2 cut(s)	565, 2009
SsiI	CCGC	8 cut(s)	119, 140, 183, 279, 282, 304, 485, 1926
SspMI	CTAG	9 cut(s)	561, 744, 915, 1010, 1146, 1353, 1488, 1575, 1622
SstI	GAGCTC	3 cut(s)	12, 1432, 1704
StuI	AGGCCT	2 cut(s)	565, 2009
StyD4I	CCNGG	4 cut(s)	347, 1447, 1521, 1549
StyI	CCWWGG	2 cut(s)	764, 1574
TaaI	ACNGT	6 cut(s)	261, 500, 520, 1086, 1646, 1888
TaqI	TCGA	9 cut(s)	198, 300, 354, 668, 817, 902, 1018, 1133, 1401
TaqII	GACCGA	1 cut(s)	266
TasI	AATT	8 cut(s)	372, 853, 905, 1390, 1540, 1678, 1863, 1993
TatI	WGTACW	1 cut(s)	1706
TauI	GCSGC	3 cut(s)	185, 282, 488
TfiI	GAWTC	7 cut(s)	86, 134, 665, 699, 788, 980, 1435
Tru1I	TTAA	2 cut(s)	1823, 1857
Tru9I	TTAA	2 cut(s)	1823, 1857
TscAI	CASTG	3 cut(s)	725, 1091, 1114
TseFI	GTSAC	3 cut(s)	255, 1028, 1492
Tsp45I	GTSAC	3 cut(s)	255, 1028, 1492
TspGWI	ACGGA	2 cut(s)	286, 316
TspRI	CASTG	3 cut(s)	725, 1091, 1114
Tth111I	GACNNNGTC	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	345
XapI	RAATTY	2 cut(s)	1390, 1993
XceI	RCATGY	3 cut(s)	398, 1316, 1902
XmaJI	CCTAGG	1 cut(s)	1574
XmiI	GTMKAC	3 cut(s)	300, 1090, 1464
XmnI	GAANNNNTTC	1 cut(s)	863
XspI	CTAG	9 cut(s)	561, 744, 915, 1010, 1146, 1353, 1488, 1575, 1622
Zsp2I	ATGCAT	2 cut(s)	1279, 1855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.