Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0019706

Physical Location & Seq

Genomic Coordinates Forward (+)

7997362 .. 7998025

Gene Structure 664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g14140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGACCAAATCCAGCACAAGTACACAACCGTACAAGGCCTGAACCTCCACGTGGCCGACGTCGGAACAGGTCCAAATGTGGTCGTGTTTCTACACGGCTTCCCGGAAATATGGTACACGTGGCGCCACCAGATGATCGCTCTGGCCAACGCCGGATTCCGGGCCATCGCTCCCGATTACCGCGGATATGGACTCTCCGACCCGCCTCCACAACCCGAGAAGGCCTCCTTCCTTGACCTTGACAATGACCTCCTTGCAATTCTTGATGCCCTTGCCATTCCTAAGTGTTGGCGTGAGTCACGCACCCTTGTGGTGCTAGGAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001676 GO:0002532 GO:0002538 GO:0002539 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006954 GO:0007600 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0019233 GO:0019752 GO:0030258 GO:0032501 GO:0032787 GO:0033559 GO:0042577 GO:0042578 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045777 GO:0046839 GO:0046872 GO:0050877 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

109

Amino Acids

12.09

Weight (kDa)

5.67

Isoelectric Point (pI)

25.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	26 - 95	4.2e-15	alpha/beta hydrolase fold
Hydrolase_4	PF12146	27 - 92	3.1e-06	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	28 - 105	2e-09	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019706)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14140
pyrus_communis	pycom05g29390
rosa_chinensis	RchiOBHm_Chr5g0007851
rosa_multiflora	Rmu_co8357371.1_g000001 Rmu_sc0005098.1_g000010
rosa_samantha	Rh5AG059500 Rh5CG066200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	63
AccB1I	GGYRCC	1 cut(s)	123
AccII	CGCG	1 cut(s)	183
AciI	CCGC	3 cut(s)	181, 183, 203
AcoI	YGGCCR	2 cut(s)	54, 144
AcvI	CACGTG	2 cut(s)	52, 120
AcyI	GRCGYC	2 cut(s)	60, 124
AfaI	GTAC	3 cut(s)	23, 33, 116
AfiI	CCNNNNNNNGG	2 cut(s)	52, 159
AflIII	ACRYGT	1 cut(s)	117
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AleI	CACNNNNGTG	1 cut(s)	308
Ama87I	CYCGRG	1 cut(s)	215
AoxI	GGCC	5 cut(s)	37, 54, 144, 162, 222
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	3 cut(s)	4, 71, 162
AsuC2I	CCSGG	2 cut(s)	104, 161
AvaI	CYCGRG	1 cut(s)	215
AvaII	GGWCC	2 cut(s)	4, 71
BalI	TGGCCA	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	123
BbrPI	CACGTG	2 cut(s)	52, 120
BccI	CCATC	1 cut(s)	173
BceAI	ACGGC	1 cut(s)	112
BcnI	CCSGG	2 cut(s)	104, 161
BfaI	CTAG	1 cut(s)	317
BfoI	RGCGCY	1 cut(s)	127
Bme1390I	CCNGG	2 cut(s)	104, 161
Bme18I	GGWCC	2 cut(s)	4, 71
BmeT110I	CYCGRG	1 cut(s)	215
BmgT120I	GGNCC	3 cut(s)	4, 71, 162
BmiI	GGNNCC	1 cut(s)	125
BmrFI	CCNGG	2 cut(s)	104, 161
BmsI	GCATC	1 cut(s)	256
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
BpuMI	CCSGG	2 cut(s)	104, 161
BsaAI	YACGTR	2 cut(s)	52, 120
BsaHI	GRCGYC	2 cut(s)	60, 124
BsaJI	CCNNGG	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 159
BseDI	CCNNGG	1 cut(s)	181
BseLI	CCNNNNNNNGG	2 cut(s)	52, 159
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	5 cut(s)	39, 56, 146, 164, 224
BshNI	GGYRCC	1 cut(s)	123
BsiHKCI	CYCGRG	1 cut(s)	215
BsiSI	CCGG	3 cut(s)	104, 153, 160
BslI	CCNNNNNNNGG	2 cut(s)	52, 159
BsnI	GGCC	5 cut(s)	39, 56, 146, 164, 224
BsoBI	CYCGRG	1 cut(s)	215
Bsp143I	GATC	1 cut(s)	135
BspACI	CCGC	3 cut(s)	181, 183, 203
BspANI	GGCC	5 cut(s)	39, 56, 146, 164, 224
BspFNI	CGCG	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	125
BspT107I	GGYRCC	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	181
BssMI	GATC	1 cut(s)	135
BssNI	GRCGYC	2 cut(s)	60, 124
Bst4CI	ACNGT	1 cut(s)	31
BstACI	GRCGYC	2 cut(s)	60, 124
BstBAI	YACGTR	2 cut(s)	52, 120
BstDEI	CTNAG	1 cut(s)	282
BstDSI	CCRYGG	1 cut(s)	181
BstFNI	CGCG	1 cut(s)	183
BstH2I	RGCGCY	1 cut(s)	127
BstHHI	GCGC	1 cut(s)	126
BstKTI	GATC	1 cut(s)	138
BstMBI	GATC	1 cut(s)	135
BstSCI	CCNGG	2 cut(s)	102, 159
BstUI	CGCG	1 cut(s)	183
BsuRI	GGCC	5 cut(s)	39, 56, 146, 164, 224
BtgI	CCRYGG	1 cut(s)	181
BtgZI	GCGATG	1 cut(s)	151
CfoI	GCGC	1 cut(s)	126
Cfr13I	GGNCC	3 cut(s)	4, 71, 162
Cfr42I	CCGCGG	1 cut(s)	184
Csp6I	GTAC	3 cut(s)	22, 32, 115
CviJI	RGCY	6 cut(s)	39, 56, 99, 146, 164, 224
CviKI_1	RGCY	6 cut(s)	39, 56, 99, 146, 164, 224
CviQI	GTAC	3 cut(s)	22, 32, 115
DdeI	CTNAG	1 cut(s)	282
DinI	GGCGCC	1 cut(s)	125
DpnI	GATC	1 cut(s)	137
DpnII	GATC	1 cut(s)	135
EaeI	YGGCCR	2 cut(s)	54, 144
Eco147I	AGGCCT	2 cut(s)	39, 224
Eco47I	GGWCC	2 cut(s)	4, 71
Eco72I	CACGTG	2 cut(s)	52, 120
Eco88I	CYCGRG	1 cut(s)	215
EgeI	GGCGCC	1 cut(s)	125
EheI	GGCGCC	1 cut(s)	125
FaiI	YATR	2 cut(s)	112, 189
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FauI	CCCGC	1 cut(s)	210
FspBI	CTAG	1 cut(s)	317
GlaI	GCGC	1 cut(s)	125
HaeII	RGCGCY	1 cut(s)	127
HaeIII	GGCC	5 cut(s)	39, 56, 146, 164, 224
HapII	CCGG	3 cut(s)	104, 153, 160
HhaI	GCGC	1 cut(s)	126
Hin1I	GRCGYC	2 cut(s)	60, 124
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HinfI	GANTC	3 cut(s)	156, 192, 296
HpaII	CCGG	3 cut(s)	104, 153, 160
Hpy166II	GTNNAC	2 cut(s)	24, 117
Hpy188I	TCNGA	2 cut(s)	65, 199
Hpy188III	TCNNGA	2 cut(s)	173, 263
Hpy8I	GTNNAC	2 cut(s)	24, 117
Hpy99I	CGWCG	2 cut(s)	62, 65
HpyAV	CCTTC	2 cut(s)	214, 238
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4IV	ACGT	3 cut(s)	51, 60, 119
HpyCH4V	TGCA	1 cut(s)	257
HpyF3I	CTNAG	1 cut(s)	282
HpySE526I	ACGT	3 cut(s)	51, 60, 119
Hsp92I	GRCGYC	2 cut(s)	60, 124
HspAI	GCGC	1 cut(s)	124
KasI	GGCGCC	1 cut(s)	123
KspI	CCGCGG	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	135
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	8 cut(s)	26, 53, 54, 117, 128, 143, 166, 173
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	1 cut(s)	317
MaeII	ACGT	3 cut(s)	51, 60, 119
MaeIII	GTNAC	1 cut(s)	297
MalI	GATC	1 cut(s)	137
MboI	GATC	1 cut(s)	135
MlsI	TGGCCA	1 cut(s)	146
MluCI	AATT	1 cut(s)	258
MluNI	TGGCCA	1 cut(s)	146
Mly113I	GGCGCC	1 cut(s)	124
MlyI	GAGTC	2 cut(s)	186, 305
MmeI	TCCRAC	2 cut(s)	43, 222
MnlI	CCTC	4 cut(s)	56, 216, 235, 260
Mox20I	TGGCCA	1 cut(s)	146
MscI	TGGCCA	1 cut(s)	146
MslI	CAYNNNNRTG	1 cut(s)	308
Msp20I	TGGCCA	1 cut(s)	146
MspA1I	CMGCKG	1 cut(s)	183
MspI	CCGG	3 cut(s)	104, 153, 160
MspR9I	CCNGG	2 cut(s)	104, 161
MvnI	CGCG	1 cut(s)	183
NarI	GGCGCC	1 cut(s)	124
NciI	CCSGG	2 cut(s)	104, 161
NdeII	GATC	1 cut(s)	135
NlaIV	GGNNCC	1 cut(s)	125
NmuCI	GTSAC	1 cut(s)	297
OliI	CACNNNNGTG	1 cut(s)	308
PceI	AGGCCT	2 cut(s)	39, 224
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	156
PfoI	TCCNGGA	1 cut(s)	102
PleI	GAGTC	2 cut(s)	186, 304
PluTI	GGCGCC	1 cut(s)	127
PmaCI	CACGTG	2 cut(s)	52, 120
PmlI	CACGTG	2 cut(s)	52, 120
PpsI	GAGTC	2 cut(s)	186, 304
Ppu21I	YACGTR	2 cut(s)	52, 120
PspCI	CACGTG	2 cut(s)	52, 120
PspN4I	GGNNCC	1 cut(s)	125
PspPI	GGNCC	3 cut(s)	4, 71, 162
RsaI	GTAC	3 cut(s)	23, 33, 116
RsaNI	GTAC	3 cut(s)	22, 32, 115
RseI	CAYNNNNRTG	1 cut(s)	308
SacII	CCGCGG	1 cut(s)	184
Sau3AI	GATC	1 cut(s)	135
Sau96I	GGNCC	3 cut(s)	4, 71, 162
SchI	GAGTC	2 cut(s)	186, 305
ScrFI	CCNGG	2 cut(s)	104, 161
SetI	ASST	7 cut(s)	48, 54, 63, 73, 122, 240, 252
SfaNI	GCATC	1 cut(s)	256
SfoI	GGCGCC	1 cut(s)	125
Sfr303I	CCGCGG	1 cut(s)	184
SgrBI	CCGCGG	1 cut(s)	184
SinI	GGWCC	2 cut(s)	4, 71
SmiMI	CAYNNNNRTG	1 cut(s)	308
Sse9I	AATT	1 cut(s)	258
SseBI	AGGCCT	2 cut(s)	39, 224
SsiI	CCGC	3 cut(s)	181, 183, 203
SspDI	GGCGCC	1 cut(s)	123
SspMI	CTAG	1 cut(s)	317
StuI	AGGCCT	2 cut(s)	39, 224
StyD4I	CCNGG	2 cut(s)	102, 159
TaaI	ACNGT	1 cut(s)	31
TaiI	ACGT	3 cut(s)	54, 63, 122
TasI	AATT	1 cut(s)	258
TatI	WGTACW	1 cut(s)	21
TfiI	GAWTC	1 cut(s)	156
TseFI	GTSAC	1 cut(s)	297
Tsp45I	GTSAC	1 cut(s)	297
VpaK11BI	GGWCC	2 cut(s)	4, 71
XspI	CTAG	1 cut(s)	317
ZraI	GACGTC	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.