Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0019706

Physical Location & Seq

Genomic Coordinates Forward (+)

5012171 .. 5013023

Gene Structure 853 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG066200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGACCAAATCGAGCACAAGTACATAACCGTGCAAGGCCTGAAGCTCCACGTGGCCGACATCGGAAAAGGTCCCAACATGGTCGTGTTCCTACACGGATTCCCAGACATATGGTACACGTGGCGCCACCAGATGCTCGCTCTGGCCAACGCCGGGTTCCGGGCCATCGCGCCCGACTACCGCGGATACGGACTCTCCGACCCGCCTCCTCAACCCGAGAAGGCCTCCTTCGTTGACCTTAACAATGACCTCCTTGCTATTCTTGATGCCCTTGCCATTCCTAAGGTTTTCCTCATCGGAAAAGATTTTGGAACTTGGCCGGCGTACATATTTGCCAGTCTGCCCAGAAAGGACCTTGGGAGTTGTAACAATGGGAGTGCCATACATGCCAAAGTCAAGTCGTCCCCAATATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001676 GO:0002532 GO:0002538 GO:0002539 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006954 GO:0007600 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0019233 GO:0019752 GO:0030258 GO:0032501 GO:0032787 GO:0033559 GO:0042577 GO:0042578 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045777 GO:0046839 GO:0046872 GO:0050877 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

138

Amino Acids

15.2

Weight (kDa)

7.89

Isoelectric Point (pI)

20.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	27 - 113	2.5e-18	alpha/beta hydrolase fold
Hydrolase_4	PF12146	27 - 105	1.4e-06	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	28 - 110	1.4e-11	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019706)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14140
pyrus_communis	pycom05g29390
rosa_chinensis	RchiOBHm_Chr5g0007851
rosa_multiflora	Rmu_co8357371.1_g000001 Rmu_sc0005098.1_g000010
rosa_samantha	Rh5AG059500 Rh5CG066200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	123
AccII	CGCG	2 cut(s)	170, 183
AciI	CCGC	3 cut(s)	181, 183, 203
AcoI	YGGCCR	3 cut(s)	54, 144, 317
AcuI	CTGAAG	1 cut(s)	62
AcvI	CACGTG	2 cut(s)	52, 120
AcyI	GRCGYC	1 cut(s)	124
AfaI	GTAC	3 cut(s)	23, 116, 326
AfiI	CCNNNNNNNGG	2 cut(s)	153, 159
AflIII	ACRYGT	1 cut(s)	117
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
Alw21I	GWGCWC	1 cut(s)	18
Ama87I	CYCGRG	1 cut(s)	215
AoxI	GGCC	6 cut(s)	37, 54, 144, 162, 222, 317
AspLEI	GCGC	2 cut(s)	126, 172
AspS9I	GGNCC	4 cut(s)	4, 71, 162, 352
AsuC2I	CCSGG	2 cut(s)	154, 161
AvaI	CYCGRG	1 cut(s)	215
AvaII	GGWCC	3 cut(s)	4, 71, 352
AxyI	CCTNAGG	1 cut(s)	282
BalI	TGGCCA	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	123
BbrPI	CACGTG	2 cut(s)	52, 120
Bbv12I	GWGCWC	1 cut(s)	18
BccI	CCATC	1 cut(s)	173
BciVI	GTATCC	1 cut(s)	179
BcnI	CCSGG	2 cut(s)	154, 161
BfoI	RGCGCY	1 cut(s)	127
BfuI	GTATCC	1 cut(s)	179
Bme1390I	CCNGG	2 cut(s)	154, 161
Bme18I	GGWCC	3 cut(s)	4, 71, 352
BmeT110I	CYCGRG	1 cut(s)	215
BmgT120I	GGNCC	4 cut(s)	4, 71, 162, 352
BmiI	GGNNCC	3 cut(s)	73, 125, 158
BmrFI	CCNGG	2 cut(s)	154, 161
BmsI	GCATC	2 cut(s)	123, 256
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
BpuMI	CCSGG	2 cut(s)	154, 161
BsaAI	YACGTR	2 cut(s)	52, 120
BsaHI	GRCGYC	1 cut(s)	124
BsaJI	CCNNGG	2 cut(s)	181, 355
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 159
Bse118I	RCCGGY	1 cut(s)	319
Bse1I	ACTGG	1 cut(s)	336
Bse21I	CCTNAGG	1 cut(s)	282
BseDI	CCNNGG	2 cut(s)	181, 355
BseLI	CCNNNNNNNGG	2 cut(s)	153, 159
BseNI	ACTGG	1 cut(s)	336
BseRI	GAGGAG	1 cut(s)	198
Bsh1236I	CGCG	2 cut(s)	170, 183
BshFI	GGCC	6 cut(s)	39, 56, 146, 164, 224, 319
BshNI	GGYRCC	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	18
BsiHKCI	CYCGRG	1 cut(s)	215
BsiSI	CCGG	3 cut(s)	153, 160, 320
BslFI	GGGAC	2 cut(s)	57, 388
BslI	CCNNNNNNNGG	2 cut(s)	153, 159
BsmFI	GGGAC	2 cut(s)	57, 388
BsnI	GGCC	6 cut(s)	39, 56, 146, 164, 224, 319
BsoBI	CYCGRG	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	18
BspACI	CCGC	3 cut(s)	181, 183, 203
BspANI	GGCC	6 cut(s)	39, 56, 146, 164, 224, 319
BspFNI	CGCG	2 cut(s)	170, 183
BspLI	GGNNCC	3 cut(s)	73, 125, 158
BspT107I	GGYRCC	1 cut(s)	123
BsrFI	RCCGGY	1 cut(s)	319
BsrI	ACTGG	1 cut(s)	336
BssAI	RCCGGY	1 cut(s)	319
BssECI	CCNNGG	2 cut(s)	181, 355
BssNI	GRCGYC	1 cut(s)	124
BssT1I	CCWWGG	1 cut(s)	355
Bst4CI	ACNGT	1 cut(s)	31
BstACI	GRCGYC	1 cut(s)	124
BstBAI	YACGTR	2 cut(s)	52, 120
BstC8I	GCNNGC	2 cut(s)	138, 321
BstDEI	CTNAG	1 cut(s)	282
BstDSI	CCRYGG	1 cut(s)	181
BstFNI	CGCG	2 cut(s)	170, 183
BstH2I	RGCGCY	1 cut(s)	127
BstHHI	GCGC	2 cut(s)	126, 172
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNSI	RCATGY	1 cut(s)	389
BstSCI	CCNGG	2 cut(s)	152, 159
BstUI	CGCG	2 cut(s)	170, 183
BstXI	CCANNNNNNTGG	1 cut(s)	111
Bsu36I	CCTNAGG	1 cut(s)	282
BsuI	GTATCC	1 cut(s)	179
BsuRI	GGCC	6 cut(s)	39, 56, 146, 164, 224, 319
BtgI	CCRYGG	1 cut(s)	181
BtgZI	GCGATG	1 cut(s)	151
Cac8I	GCNNGC	2 cut(s)	138, 321
CfoI	GCGC	2 cut(s)	126, 172
Cfr10I	RCCGGY	1 cut(s)	319
Cfr13I	GGNCC	4 cut(s)	4, 71, 162, 352
Cfr42I	CCGCGG	1 cut(s)	184
Csp6I	GTAC	3 cut(s)	22, 115, 325
CviAII	CATG	2 cut(s)	79, 386
CviJI	RGCY	7 cut(s)	39, 46, 56, 146, 164, 224, 319
CviKI_1	RGCY	7 cut(s)	39, 46, 56, 146, 164, 224, 319
CviQI	GTAC	3 cut(s)	22, 115, 325
DdeI	CTNAG	1 cut(s)	282
DinI	GGCGCC	1 cut(s)	125
EaeI	YGGCCR	3 cut(s)	54, 144, 317
Eco130I	CCWWGG	1 cut(s)	355
Eco147I	AGGCCT	2 cut(s)	39, 224
Eco47I	GGWCC	3 cut(s)	4, 71, 352
Eco57I	CTGAAG	1 cut(s)	62
Eco72I	CACGTG	2 cut(s)	52, 120
Eco81I	CCTNAGG	1 cut(s)	282
Eco88I	CYCGRG	1 cut(s)	215
EcoO109I	RGGNCCY	2 cut(s)	71, 352
EcoT14I	CCWWGG	1 cut(s)	355
EgeI	GGCGCC	1 cut(s)	125
EheI	GGCGCC	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	2 cut(s)	82, 389
FaiI	YATR	7 cut(s)	26, 80, 110, 112, 329, 383, 387
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FaqI	GGGAC	2 cut(s)	57, 388
FatI	CATG	2 cut(s)	78, 385
FauI	CCCGC	1 cut(s)	210
FauNDI	CATATG	1 cut(s)	110
GlaI	GCGC	2 cut(s)	125, 171
HaeII	RGCGCY	1 cut(s)	127
HaeIII	GGCC	6 cut(s)	39, 56, 146, 164, 224, 319
HapII	CCGG	3 cut(s)	153, 160, 320
HhaI	GCGC	2 cut(s)	126, 172
Hin1I	GRCGYC	1 cut(s)	124
Hin1II	CATG	2 cut(s)	82, 389
Hin6I	GCGC	2 cut(s)	124, 170
HinP1I	GCGC	2 cut(s)	124, 170
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	2 cut(s)	99, 192
HpaII	CCGG	3 cut(s)	153, 160, 320
Hpy166II	GTNNAC	2 cut(s)	117, 235
Hpy188I	TCNGA	3 cut(s)	65, 199, 299
Hpy188III	TCNNGA	2 cut(s)	263, 414
Hpy8I	GTNNAC	2 cut(s)	117, 235
HpyAV	CCTTC	2 cut(s)	214, 238
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4IV	ACGT	2 cut(s)	51, 119
HpyCH4V	TGCA	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	1 cut(s)	282
HpySE526I	ACGT	2 cut(s)	51, 119
Hsp92I	GRCGYC	1 cut(s)	124
Hsp92II	CATG	2 cut(s)	82, 389
HspAI	GCGC	2 cut(s)	124, 170
KasI	GGCGCC	1 cut(s)	123
KroI	GCCGGC	1 cut(s)	319
KroNI	GCCGGC	1 cut(s)	321
KspI	CCGCGG	1 cut(s)	184
LmnI	GCTCC	1 cut(s)	51
LpnPI	CCDG	9 cut(s)	53, 117, 128, 143, 166, 173, 333, 349, 358
LweI	GCATC	2 cut(s)	123, 256
MaeII	ACGT	2 cut(s)	51, 119
MaeIII	GTNAC	1 cut(s)	365
MhlI	GDGCHC	1 cut(s)	18
MlsI	TGGCCA	1 cut(s)	146
MluNI	TGGCCA	1 cut(s)	146
Mly113I	GGCGCC	1 cut(s)	124
MlyI	GAGTC	1 cut(s)	186
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	5 cut(s)	216, 219, 235, 260, 302
Mox20I	TGGCCA	1 cut(s)	146
MroNI	GCCGGC	1 cut(s)	319
MscI	TGGCCA	1 cut(s)	146
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	2 cut(s)	29, 83
Msp20I	TGGCCA	1 cut(s)	146
MspA1I	CMGCKG	1 cut(s)	183
MspI	CCGG	3 cut(s)	153, 160, 320
MspR9I	CCNGG	2 cut(s)	154, 161
MvnI	CGCG	2 cut(s)	170, 183
MwoI	GCNNNNNNNGC	1 cut(s)	386
NaeI	GCCGGC	1 cut(s)	321
NarI	GGCGCC	1 cut(s)	124
NciI	CCSGG	2 cut(s)	154, 161
NdeI	CATATG	1 cut(s)	110
NgoMIV	GCCGGC	1 cut(s)	319
NlaIII	CATG	2 cut(s)	82, 389
NlaIV	GGNNCC	3 cut(s)	73, 125, 158
NspI	RCATGY	1 cut(s)	389
PceI	AGGCCT	2 cut(s)	39, 224
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PdiI	GCCGGC	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	99
PleI	GAGTC	1 cut(s)	186
PluTI	GGCGCC	1 cut(s)	127
PmaCI	CACGTG	2 cut(s)	52, 120
PmlI	CACGTG	2 cut(s)	52, 120
PpsI	GAGTC	1 cut(s)	186
Ppu21I	YACGTR	2 cut(s)	52, 120
PpuMI	RGGWCCY	2 cut(s)	71, 352
Psp5II	RGGWCCY	2 cut(s)	71, 352
PspCI	CACGTG	2 cut(s)	52, 120
PspN4I	GGNNCC	3 cut(s)	73, 125, 158
PspPI	GGNCC	4 cut(s)	4, 71, 162, 352
PspPPI	RGGWCCY	2 cut(s)	71, 352
RsaI	GTAC	3 cut(s)	23, 116, 326
RsaNI	GTAC	3 cut(s)	22, 115, 325
RseI	CAYNNNNRTG	2 cut(s)	29, 83
SacII	CCGCGG	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	240
Sau96I	GGNCC	4 cut(s)	4, 71, 162, 352
SchI	GAGTC	1 cut(s)	186
ScrFI	CCNGG	2 cut(s)	154, 161
SduI	GDGCHC	1 cut(s)	18
SetI	ASST	8 cut(s)	48, 54, 73, 122, 240, 252, 288, 357
SfaNI	GCATC	2 cut(s)	123, 256
SfoI	GGCGCC	1 cut(s)	125
Sfr303I	CCGCGG	1 cut(s)	184
SgrBI	CCGCGG	1 cut(s)	184
SinI	GGWCC	3 cut(s)	4, 71, 352
SmiMI	CAYNNNNRTG	2 cut(s)	29, 83
SseBI	AGGCCT	2 cut(s)	39, 224
SsiI	CCGC	3 cut(s)	181, 183, 203
SspDI	GGCGCC	1 cut(s)	123
StuI	AGGCCT	2 cut(s)	39, 224
StyD4I	CCNGG	2 cut(s)	152, 159
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	1 cut(s)	31
TaiI	ACGT	2 cut(s)	54, 122
TaqI	TCGA	1 cut(s)	12
TatI	WGTACW	1 cut(s)	21
TfiI	GAWTC	1 cut(s)	99
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TspGWI	ACGGA	2 cut(s)	111, 204
VpaK11BI	GGWCC	3 cut(s)	4, 71, 352
XceI	RCATGY	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.