Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0019706

Physical Location & Seq

Genomic Coordinates Forward (+)

5091875 .. 5092955

Gene Structure 1081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG059500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGACCAAATCGAGCACAAGTACATAACCGTGCAAGGCCTGAAGCTCCACGTGGCCGACATCGGAAAAGGTCCCAACGTGGTCATGTTCCTACACGGATTCCCAGACATATGGTACACGTGGCGCCACCAGATGATCGCTCTGCCGAACGCCGGGTTTCGGGCCATCGCGCCCGACTACCGCCGATACGGATTCTCCGACCCGCCTTCTCAACCCGAGAAGGCCTCCTTCGTTGACCTTAACAATGACCTCCTTGCTATTCTTGATGCCCTTGCCATTCCTAAGGAACCAGGTGGCAGGGCAGAAGCTGATTTTGGACGAATTGATTCGAAAACAGTTATTCACAATGTGTACATTCTTTTCTCGAGGAGCGAACTACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001676 GO:0002532 GO:0002538 GO:0002539 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006954 GO:0007600 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0019233 GO:0019752 GO:0030258 GO:0032501 GO:0032787 GO:0033559 GO:0042577 GO:0042578 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045777 GO:0046839 GO:0046872 GO:0050877 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

127

Amino Acids

14.36

Weight (kDa)

6.17

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	26 - 94	4e-12	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019706)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14140
pyrus_communis	pycom05g29390
rosa_chinensis	RchiOBHm_Chr5g0007851
rosa_multiflora	Rmu_co8357371.1_g000001 Rmu_sc0005098.1_g000010
rosa_samantha	Rh5AG059500 Rh5CG066200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	123
AccII	CGCG	1 cut(s)	170
AciI	CCGC	2 cut(s)	181, 203
AcoI	YGGCCR	1 cut(s)	54
AcuI	CTGAAG	1 cut(s)	62
AcvI	CACGTG	2 cut(s)	52, 120
AcyI	GRCGYC	1 cut(s)	124
AdeI	CACNNNGTG	1 cut(s)	349
AfaI	GTAC	3 cut(s)	23, 116, 353
AfiI	CCNNNNNNNGG	2 cut(s)	152, 159
AflIII	ACRYGT	1 cut(s)	117
AjnI	CCWGG	1 cut(s)	289
AjuI	GAANNNNNNNTTGG	2 cut(s)	297, 329
AluBI	AGCT	2 cut(s)	46, 308
AluI	AGCT	2 cut(s)	46, 308
Alw21I	GWGCWC	1 cut(s)	18
AlwNI	CAGNNNCTG	1 cut(s)	308
Ama87I	CYCGRG	2 cut(s)	215, 364
AoxI	GGCC	4 cut(s)	37, 54, 162, 222
Asp700I	GAANNNNTTC	1 cut(s)	325
AspLEI	GCGC	2 cut(s)	126, 172
AspS9I	GGNCC	3 cut(s)	4, 71, 162
AsuC2I	CCSGG	1 cut(s)	154
AsuII	TTCGAA	1 cut(s)	329
AvaI	CYCGRG	2 cut(s)	215, 364
AvaII	GGWCC	2 cut(s)	4, 71
AxyI	CCTNAGG	1 cut(s)	282
BanI	GGYRCC	1 cut(s)	123
BbrPI	CACGTG	2 cut(s)	52, 120
Bbv12I	GWGCWC	1 cut(s)	18
BccI	CCATC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	291
BcnI	CCSGG	1 cut(s)	154
BfoI	RGCGCY	1 cut(s)	127
Bme1390I	CCNGG	2 cut(s)	154, 291
Bme18I	GGWCC	2 cut(s)	4, 71
BmeT110I	CYCGRG	2 cut(s)	215, 364
BmgT120I	GGNCC	3 cut(s)	4, 71, 162
BmiI	GGNNCC	3 cut(s)	73, 125, 288
BmrFI	CCNGG	2 cut(s)	154, 291
BmsI	GCATC	1 cut(s)	256
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
Bpu14I	TTCGAA	1 cut(s)	329
BpuMI	CCSGG	1 cut(s)	154
BsaAI	YACGTR	2 cut(s)	52, 120
BsaHI	GRCGYC	1 cut(s)	124
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 159
Bse21I	CCTNAGG	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	291
BseLI	CCNNNNNNNGG	2 cut(s)	152, 159
BseRI	GAGGAG	1 cut(s)	382
Bsh1236I	CGCG	1 cut(s)	170
BshFI	GGCC	4 cut(s)	39, 56, 164, 224
BshNI	GGYRCC	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	18
BsiHKCI	CYCGRG	2 cut(s)	215, 364
BsiSI	CCGG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	2 cut(s)	152, 159
BsmFI	GGGAC	1 cut(s)	57
BsnI	GGCC	4 cut(s)	39, 56, 164, 224
BsoBI	CYCGRG	2 cut(s)	215, 364
Bsp119I	TTCGAA	1 cut(s)	329
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp1407I	TGTACA	1 cut(s)	351
Bsp143I	GATC	1 cut(s)	135
BspACI	CCGC	2 cut(s)	181, 203
BspANI	GGCC	4 cut(s)	39, 56, 164, 224
BspFNI	CGCG	1 cut(s)	170
BspLI	GGNNCC	3 cut(s)	73, 125, 288
BspT104I	TTCGAA	1 cut(s)	329
BspT107I	GGYRCC	1 cut(s)	123
BsrGI	TGTACA	1 cut(s)	351
BssMI	GATC	1 cut(s)	135
BssNI	GRCGYC	1 cut(s)	124
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	31, 337
BstACI	GRCGYC	1 cut(s)	124
BstAUI	TGTACA	1 cut(s)	351
BstBAI	YACGTR	2 cut(s)	52, 120
BstBI	TTCGAA	1 cut(s)	329
BstDEI	CTNAG	1 cut(s)	282
BstFNI	CGCG	1 cut(s)	170
BstH2I	RGCGCY	1 cut(s)	127
BstHHI	GCGC	2 cut(s)	126, 172
BstKTI	GATC	1 cut(s)	138
BstMBI	GATC	1 cut(s)	135
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	2 cut(s)	152, 289
BstUI	CGCG	1 cut(s)	170
BstXI	CCANNNNNNTGG	1 cut(s)	111
Bsu36I	CCTNAGG	1 cut(s)	282
BsuRI	GGCC	4 cut(s)	39, 56, 164, 224
BtgZI	GCGATG	1 cut(s)	151
CaiI	CAGNNNCTG	1 cut(s)	308
CfoI	GCGC	2 cut(s)	126, 172
Cfr13I	GGNCC	3 cut(s)	4, 71, 162
CsiI	ACCWGGT	1 cut(s)	289
Csp6I	GTAC	3 cut(s)	22, 115, 352
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	6 cut(s)	39, 46, 56, 164, 224, 308
CviKI_1	RGCY	6 cut(s)	39, 46, 56, 164, 224, 308
CviQI	GTAC	3 cut(s)	22, 115, 352
DdeI	CTNAG	1 cut(s)	282
DinI	GGCGCC	1 cut(s)	125
DpnI	GATC	1 cut(s)	137
DpnII	GATC	1 cut(s)	135
DraIII	CACNNNGTG	1 cut(s)	349
EaeI	YGGCCR	1 cut(s)	54
Eco147I	AGGCCT	2 cut(s)	39, 224
Eco47I	GGWCC	2 cut(s)	4, 71
Eco57I	CTGAAG	1 cut(s)	62
Eco72I	CACGTG	2 cut(s)	52, 120
Eco81I	CCTNAGG	1 cut(s)	282
Eco88I	CYCGRG	2 cut(s)	215, 364
EcoO109I	RGGNCCY	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	289
EgeI	GGCGCC	1 cut(s)	125
EheI	GGCGCC	1 cut(s)	125
FaeI	CATG	1 cut(s)	88
FaiI	YATR	4 cut(s)	26, 86, 110, 112
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	1 cut(s)	84
FauI	CCCGC	1 cut(s)	210
FauNDI	CATATG	1 cut(s)	110
GlaI	GCGC	2 cut(s)	125, 171
HaeII	RGCGCY	1 cut(s)	127
HaeIII	GGCC	4 cut(s)	39, 56, 164, 224
HapII	CCGG	1 cut(s)	153
HhaI	GCGC	2 cut(s)	126, 172
Hin1I	GRCGYC	1 cut(s)	124
Hin1II	CATG	1 cut(s)	88
Hin6I	GCGC	2 cut(s)	124, 170
HinP1I	GCGC	2 cut(s)	124, 170
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	3 cut(s)	99, 192, 326
HpaII	CCGG	1 cut(s)	153
Hpy166II	GTNNAC	3 cut(s)	117, 235, 352
Hpy188I	TCNGA	2 cut(s)	65, 199
Hpy188III	TCNNGA	2 cut(s)	263, 364
Hpy8I	GTNNAC	3 cut(s)	117, 235, 352
HpyAV	CCTTC	3 cut(s)	214, 216, 238
HpyCH4III	ACNGT	2 cut(s)	31, 337
HpyCH4IV	ACGT	3 cut(s)	51, 78, 119
HpyCH4V	TGCA	1 cut(s)	34
HpyF3I	CTNAG	1 cut(s)	282
HpySE526I	ACGT	3 cut(s)	51, 78, 119
Hsp92I	GRCGYC	1 cut(s)	124
Hsp92II	CATG	1 cut(s)	88
HspAI	GCGC	2 cut(s)	124, 170
KasI	GGCGCC	1 cut(s)	123
Kzo9I	GATC	1 cut(s)	135
LmnI	GCTCC	2 cut(s)	51, 369
LpnPI	CCDG	7 cut(s)	53, 117, 143, 166, 276, 283, 303
LweI	GCATC	1 cut(s)	256
MabI	ACCWGGT	1 cut(s)	289
MaeII	ACGT	3 cut(s)	51, 78, 119
MalI	GATC	1 cut(s)	137
MboI	GATC	1 cut(s)	135
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	1 cut(s)	321
Mly113I	GGCGCC	1 cut(s)	124
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	3 cut(s)	235, 260, 360
MroXI	GAANNNNTTC	1 cut(s)	325
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	1 cut(s)	29
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	2 cut(s)	154, 291
MvaI	CCWGG	1 cut(s)	291
MvnI	CGCG	1 cut(s)	170
NarI	GGCGCC	1 cut(s)	124
NciI	CCSGG	1 cut(s)	154
NdeI	CATATG	1 cut(s)	110
NdeII	GATC	1 cut(s)	135
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	3 cut(s)	73, 125, 288
NspV	TTCGAA	1 cut(s)	329
PaeR7I	CTCGAG	1 cut(s)	364
PceI	AGGCCT	2 cut(s)	39, 224
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PdmI	GAANNNNTTC	1 cut(s)	325
PfeI	GAWTC	3 cut(s)	99, 192, 326
PluTI	GGCGCC	1 cut(s)	127
PmaCI	CACGTG	2 cut(s)	52, 120
PmlI	CACGTG	2 cut(s)	52, 120
Ppu21I	YACGTR	2 cut(s)	52, 120
PpuMI	RGGWCCY	1 cut(s)	71
Psp5II	RGGWCCY	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	289
PspCI	CACGTG	2 cut(s)	52, 120
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	3 cut(s)	73, 125, 288
PspPI	GGNCC	3 cut(s)	4, 71, 162
PspPPI	RGGWCCY	1 cut(s)	71
PstNI	CAGNNNCTG	1 cut(s)	308
RsaI	GTAC	3 cut(s)	23, 116, 353
RsaNI	GTAC	3 cut(s)	22, 115, 352
RseI	CAYNNNNRTG	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	240
Sau3AI	GATC	1 cut(s)	135
Sau96I	GGNCC	3 cut(s)	4, 71, 162
ScrFI	CCNGG	2 cut(s)	154, 291
SduI	GDGCHC	1 cut(s)	18
SetI	ASST	9 cut(s)	48, 54, 73, 81, 122, 240, 252, 295, 310
SexAI	ACCWGGT	1 cut(s)	289
SfaNI	GCATC	1 cut(s)	256
SfoI	GGCGCC	1 cut(s)	125
Sfr274I	CTCGAG	1 cut(s)	364
SfuI	TTCGAA	1 cut(s)	329
SinI	GGWCC	2 cut(s)	4, 71
SlaI	CTCGAG	1 cut(s)	364
SmiMI	CAYNNNNRTG	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
Sse9I	AATT	1 cut(s)	321
SseBI	AGGCCT	2 cut(s)	39, 224
SsiI	CCGC	2 cut(s)	181, 203
SspDI	GGCGCC	1 cut(s)	123
StuI	AGGCCT	2 cut(s)	39, 224
StyD4I	CCNGG	2 cut(s)	152, 289
TaaI	ACNGT	2 cut(s)	31, 337
TaiI	ACGT	3 cut(s)	54, 81, 122
TaqI	TCGA	3 cut(s)	12, 329, 365
TasI	AATT	1 cut(s)	321
TatI	WGTACW	2 cut(s)	21, 351
TfiI	GAWTC	3 cut(s)	99, 192, 326
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TspGWI	ACGGA	2 cut(s)	111, 204
VpaK11BI	GGWCC	2 cut(s)	4, 71
XhoI	CTCGAG	1 cut(s)	364
XmnI	GAANNNNTTC	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.