Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019706

Physical Location & Seq

Genomic Coordinates Forward (+)

4997131 .. 4998938

Gene Structure 1808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28887

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCTAGCTCCACAAAGTTTCTATTCAAGGAAGACTACTTCTCTGATTCTCACTCTCTTGCTCCCAACATGGACCAAATCGAGCACAAGTACAAAACCGTGCAAGGCCTGAAGCTCCACGTGGCCGACATCGGAAAAGGTCCCAACGTGGTCGTGTTCCTACACGGATTCCCAGACATATGGTACACGTGGCGCCACCAGATGATCGCTCTAGCCAACGCCGGGTTCCGGGCCATCGCGCCCGACTACCGCGGATACGGACTCTCCGACCCGCCTCCTCAACCCGAGAAGGCCTCCTTCGTTGACCTTGACAATGACCTCCTTGCTATTCTTGATGCCCTTGCCATTCCTAAGGATCTTGAATTTTTGTTAAGATTGGTGCAGGATAAAGAAGCCTGCTTTAGCTTTGTTTTGGGTCTGCACCCAGAAAGGACCTTGGGAGTTGTAACAATGGGAGTGCCATACATGCCAAAGTCGAGTCGTCCCCAATATCCTGAAGGTTTCTATGTTTCTAGATGGCAGGAACCAGGTGGCAGGGCAGAAGCTGATTTTGGACGAATTGATGCGAAAACAGTTATTCGCAATGTGTACATTCTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001676 GO:0002532 GO:0002538 GO:0002539 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006954 GO:0007600 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0019233 GO:0019752 GO:0030258 GO:0032501 GO:0032787 GO:0033559 GO:0042577 GO:0042578 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045777 GO:0046839 GO:0046872 GO:0050877 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

200

Amino Acids

22.61

Weight (kDa)

6.06

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	49 - 117	3.5e-14	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	51 - 115	6e-09	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019706)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14140
pyrus_communis	pycom05g29390
rosa_chinensis	RchiOBHm_Chr5g0007851
rosa_multiflora	Rmu_co8357371.1_g000001 Rmu_sc0005098.1_g000010
rosa_samantha	Rh5AG059500 Rh5CG066200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	192
AccII	CGCG	2 cut(s)	239, 252
AciI	CCGC	3 cut(s)	250, 252, 272
AclWI	GGATC	1 cut(s)	363
AcoI	YGGCCR	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	362
AcuI	CTGAAG	2 cut(s)	131, 516
AcvI	CACGTG	2 cut(s)	121, 189
AcyI	GRCGYC	1 cut(s)	193
AfaI	GTAC	3 cut(s)	92, 185, 590
AfiI	CCNNNNNNNGG	2 cut(s)	222, 228
AflIII	ACRYGT	1 cut(s)	186
AgsI	TTSAA	2 cut(s)	28, 362
AjnI	CCWGG	1 cut(s)	526
AjuI	GAANNNNNNNTTGG	4 cut(s)	209, 241, 534, 566
AluBI	AGCT	4 cut(s)	9, 115, 405, 545
AluI	AGCT	4 cut(s)	9, 115, 405, 545
Alw21I	GWGCWC	1 cut(s)	87
AlwI	GGATC	1 cut(s)	363
AlwNI	CAGNNNCTG	1 cut(s)	545
Ama87I	CYCGRG	1 cut(s)	284
AoxI	GGCC	4 cut(s)	106, 123, 231, 291
ApoI	RAATTY	1 cut(s)	362
AspLEI	GCGC	2 cut(s)	195, 241
AspS9I	GGNCC	4 cut(s)	73, 140, 231, 432
AsuC2I	CCSGG	2 cut(s)	223, 230
AsuNHI	GCTAGC	1 cut(s)	5
AvaI	CYCGRG	1 cut(s)	284
AvaII	GGWCC	3 cut(s)	73, 140, 432
AxyI	CCTNAGG	1 cut(s)	351
BanI	GGYRCC	1 cut(s)	192
BbrPI	CACGTG	2 cut(s)	121, 189
BbsI	GAAGAC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	87
BccI	CCATC	2 cut(s)	242, 510
BciT130I	CCWGG	1 cut(s)	528
BciVI	GTATCC	1 cut(s)	248
BcnI	CCSGG	2 cut(s)	223, 230
BfaI	CTAG	4 cut(s)	6, 212, 513, 601
BfoI	RGCGCY	1 cut(s)	196
BfuI	GTATCC	1 cut(s)	248
Bme1390I	CCNGG	3 cut(s)	223, 230, 528
Bme18I	GGWCC	3 cut(s)	73, 140, 432
BmeT110I	CYCGRG	1 cut(s)	284
BmgT120I	GGNCC	4 cut(s)	73, 140, 231, 432
BmiI	GGNNCC	4 cut(s)	142, 194, 227, 525
BmrFI	CCNGG	3 cut(s)	223, 230, 528
BmsI	GCATC	2 cut(s)	325, 553
BmtI	GCTAGC	1 cut(s)	9
BpiI	GAAGAC	1 cut(s)	39
BplI	GAGNNNNNCTC	2 cut(s)	278, 310
BpuMI	CCSGG	2 cut(s)	223, 230
BsaAI	YACGTR	2 cut(s)	121, 189
BsaHI	GRCGYC	1 cut(s)	193
BsaJI	CCNNGG	2 cut(s)	250, 435
BsaXI	ACNNNNNCTCC	2 cut(s)	248, 278
Bsc4I	CCNNNNNNNGG	2 cut(s)	222, 228
Bse21I	CCTNAGG	1 cut(s)	351
Bse3DI	GCAATG	1 cut(s)	589
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	2 cut(s)	250, 435
BseLI	CCNNNNNNNGG	2 cut(s)	222, 228
BseMI	GCAATG	1 cut(s)	589
BseRI	GAGGAG	1 cut(s)	267
BsgI	GTGCAG	2 cut(s)	401, 404
Bsh1236I	CGCG	2 cut(s)	239, 252
BshFI	GGCC	4 cut(s)	108, 125, 233, 293
BshNI	GGYRCC	1 cut(s)	192
BsiHKAI	GWGCWC	1 cut(s)	87
BsiHKCI	CYCGRG	1 cut(s)	284
BsiSI	CCGG	2 cut(s)	222, 229
BslFI	GGGAC	2 cut(s)	126, 468
BslI	CCNNNNNNNGG	2 cut(s)	222, 228
BsmFI	GGGAC	2 cut(s)	126, 468
BsnI	GGCC	4 cut(s)	108, 125, 233, 293
BsoBI	CYCGRG	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp1407I	TGTACA	1 cut(s)	588
Bsp143I	GATC	2 cut(s)	204, 355
BspACI	CCGC	3 cut(s)	250, 252, 272
BspANI	GGCC	4 cut(s)	108, 125, 233, 293
BspFNI	CGCG	2 cut(s)	239, 252
BspLI	GGNNCC	4 cut(s)	142, 194, 227, 525
BspOI	GCTAGC	1 cut(s)	9
BspPI	GGATC	1 cut(s)	363
BspT107I	GGYRCC	1 cut(s)	192
BsrDI	GCAATG	1 cut(s)	589
BsrGI	TGTACA	1 cut(s)	588
BssECI	CCNNGG	2 cut(s)	250, 435
BssMI	GATC	2 cut(s)	204, 355
BssNI	GRCGYC	1 cut(s)	193
BssT1I	CCWWGG	1 cut(s)	435
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	2 cut(s)	100, 574
BstACI	GRCGYC	1 cut(s)	193
BstAUI	TGTACA	1 cut(s)	588
BstBAI	YACGTR	2 cut(s)	121, 189
BstC8I	GCNNGC	2 cut(s)	7, 397
BstDEI	CTNAG	1 cut(s)	351
BstDSI	CCRYGG	1 cut(s)	250
BstFNI	CGCG	2 cut(s)	239, 252
BstH2I	RGCGCY	1 cut(s)	196
BstHHI	GCGC	2 cut(s)	195, 241
BstKTI	GATC	2 cut(s)	207, 358
BstMBI	GATC	2 cut(s)	204, 355
BstMWI	GCNNNNNNNGC	1 cut(s)	466
BstNI	CCWGG	1 cut(s)	528
BstNSI	RCATGY	1 cut(s)	469
BstSCI	CCNGG	3 cut(s)	221, 228, 526
BstUI	CGCG	2 cut(s)	239, 252
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	1 cut(s)	355
BstXI	CCANNNNNNTGG	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	355
Bsu36I	CCTNAGG	1 cut(s)	351
BsuI	GTATCC	1 cut(s)	248
BsuRI	GGCC	4 cut(s)	108, 125, 233, 293
BtgI	CCRYGG	1 cut(s)	250
BtgZI	GCGATG	1 cut(s)	220
Cac8I	GCNNGC	2 cut(s)	7, 397
CaiI	CAGNNNCTG	1 cut(s)	545
CfoI	GCGC	2 cut(s)	195, 241
Cfr13I	GGNCC	4 cut(s)	73, 140, 231, 432
Cfr42I	CCGCGG	1 cut(s)	253
CsiI	ACCWGGT	1 cut(s)	526
Csp6I	GTAC	3 cut(s)	91, 184, 589
CviAII	CATG	2 cut(s)	70, 466
CviQI	GTAC	3 cut(s)	91, 184, 589
DdeI	CTNAG	1 cut(s)	351
DinI	GGCGCC	1 cut(s)	194
DpnI	GATC	2 cut(s)	206, 357
DpnII	GATC	2 cut(s)	204, 355
EaeI	YGGCCR	1 cut(s)	123
Eco130I	CCWWGG	1 cut(s)	435
Eco147I	AGGCCT	2 cut(s)	108, 293
Eco47I	GGWCC	3 cut(s)	73, 140, 432
Eco57I	CTGAAG	2 cut(s)	131, 516
Eco72I	CACGTG	2 cut(s)	121, 189
Eco81I	CCTNAGG	1 cut(s)	351
Eco88I	CYCGRG	1 cut(s)	284
EcoO109I	RGGNCCY	2 cut(s)	140, 432
EcoRII	CCWGG	1 cut(s)	526
EcoT14I	CCWWGG	1 cut(s)	435
EgeI	GGCGCC	1 cut(s)	194
EheI	GGCGCC	1 cut(s)	194
ErhI	CCWWGG	1 cut(s)	435
FaeI	CATG	2 cut(s)	73, 469
FaiI	YATR	6 cut(s)	71, 179, 181, 463, 467, 507
FalI	AAGNNNNNCTT	2 cut(s)	281, 313
FaqI	GGGAC	2 cut(s)	126, 468
FatI	CATG	2 cut(s)	69, 465
FauI	CCCGC	1 cut(s)	279
FauNDI	CATATG	1 cut(s)	179
FspBI	CTAG	4 cut(s)	6, 212, 513, 601
GlaI	GCGC	2 cut(s)	194, 240
HaeII	RGCGCY	1 cut(s)	196
HaeIII	GGCC	4 cut(s)	108, 125, 233, 293
HapII	CCGG	2 cut(s)	222, 229
HhaI	GCGC	2 cut(s)	195, 241
Hin1I	GRCGYC	1 cut(s)	193
Hin1II	CATG	2 cut(s)	73, 469
Hin6I	GCGC	2 cut(s)	193, 239
HinP1I	GCGC	2 cut(s)	193, 239
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	4 cut(s)	47, 168, 261, 478
HpaII	CCGG	2 cut(s)	222, 229
Hpy166II	GTNNAC	3 cut(s)	186, 304, 589
Hpy188I	TCNGA	3 cut(s)	46, 134, 268
Hpy188III	TCNNGA	4 cut(s)	332, 359, 494, 513
Hpy8I	GTNNAC	3 cut(s)	186, 304, 589
HpyAV	CCTTC	3 cut(s)	283, 307, 491
HpyCH4III	ACNGT	2 cut(s)	100, 574
HpyCH4IV	ACGT	3 cut(s)	120, 147, 188
HpyCH4V	TGCA	3 cut(s)	103, 382, 421
HpyF10VI	GCNNNNNNNGC	1 cut(s)	466
HpyF3I	CTNAG	1 cut(s)	351
HpySE526I	ACGT	3 cut(s)	120, 147, 188
Hsp92I	GRCGYC	1 cut(s)	193
Hsp92II	CATG	2 cut(s)	73, 469
HspAI	GCGC	2 cut(s)	193, 239
KasI	GGCGCC	1 cut(s)	192
KspI	CCGCGG	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	204, 355
LmnI	GCTCC	3 cut(s)	14, 67, 120
LweI	GCATC	2 cut(s)	325, 553
MabI	ACCWGGT	1 cut(s)	526
MaeI	CTAG	4 cut(s)	6, 212, 513, 601
MaeII	ACGT	3 cut(s)	120, 147, 188
MaeIII	GTNAC	1 cut(s)	445
MalI	GATC	2 cut(s)	206, 357
MboI	GATC	2 cut(s)	204, 355
MboII	GAAGA	1 cut(s)	44
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	2 cut(s)	362, 558
Mly113I	GGCGCC	1 cut(s)	193
MlyI	GAGTC	2 cut(s)	255, 487
MmeI	TCCRAC	1 cut(s)	291
MnlI	CCTC	4 cut(s)	285, 288, 304, 329
MseI	TTAA	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	252
MspI	CCGG	2 cut(s)	222, 229
MspR9I	CCNGG	3 cut(s)	223, 230, 528
MvaI	CCWGG	1 cut(s)	528
MvnI	CGCG	2 cut(s)	239, 252
MwoI	GCNNNNNNNGC	1 cut(s)	466
NarI	GGCGCC	1 cut(s)	193
NciI	CCSGG	2 cut(s)	223, 230
NdeI	CATATG	1 cut(s)	179
NdeII	GATC	2 cut(s)	204, 355
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	2 cut(s)	73, 469
NlaIV	GGNNCC	4 cut(s)	142, 194, 227, 525
NspI	RCATGY	1 cut(s)	469
PceI	AGGCCT	2 cut(s)	108, 293
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PfeI	GAWTC	2 cut(s)	47, 168
PleI	GAGTC	2 cut(s)	255, 486
PluTI	GGCGCC	1 cut(s)	196
PmaCI	CACGTG	2 cut(s)	121, 189
PmlI	CACGTG	2 cut(s)	121, 189
PpsI	GAGTC	2 cut(s)	255, 486
Ppu21I	YACGTR	2 cut(s)	121, 189
PpuMI	RGGWCCY	2 cut(s)	140, 432
Psp5II	RGGWCCY	2 cut(s)	140, 432
Psp6I	CCWGG	1 cut(s)	526
PspCI	CACGTG	2 cut(s)	121, 189
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	4 cut(s)	142, 194, 227, 525
PspPI	GGNCC	4 cut(s)	73, 140, 231, 432
PspPPI	RGGWCCY	2 cut(s)	140, 432
PstNI	CAGNNNCTG	1 cut(s)	545
PsuI	RGATCY	1 cut(s)	355
RsaI	GTAC	3 cut(s)	92, 185, 590
RsaNI	GTAC	3 cut(s)	91, 184, 589
SacII	CCGCGG	1 cut(s)	253
SaqAI	TTAA	1 cut(s)	371
Sau3AI	GATC	2 cut(s)	204, 355
Sau96I	GGNCC	4 cut(s)	73, 140, 231, 432
SchI	GAGTC	2 cut(s)	255, 487
ScrFI	CCNGG	3 cut(s)	223, 230, 528
SduI	GDGCHC	1 cut(s)	87
SexAI	ACCWGGT	1 cut(s)	526
SfaNI	GCATC	2 cut(s)	325, 553
SfoI	GGCGCC	1 cut(s)	194
Sfr303I	CCGCGG	1 cut(s)	253
SgrBI	CCGCGG	1 cut(s)	253
SinI	GGWCC	3 cut(s)	73, 140, 432
Sse9I	AATT	2 cut(s)	362, 558
SseBI	AGGCCT	2 cut(s)	108, 293
SsiI	CCGC	3 cut(s)	250, 252, 272
SspDI	GGCGCC	1 cut(s)	192
SspMI	CTAG	4 cut(s)	6, 212, 513, 601
StuI	AGGCCT	2 cut(s)	108, 293
StyD4I	CCNGG	3 cut(s)	221, 228, 526
StyI	CCWWGG	1 cut(s)	435
TaaI	ACNGT	2 cut(s)	100, 574
TaiI	ACGT	3 cut(s)	123, 150, 191
TaqI	TCGA	2 cut(s)	81, 476
TasI	AATT	2 cut(s)	362, 558
TatI	WGTACW	2 cut(s)	90, 588
TfiI	GAWTC	2 cut(s)	47, 168
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TspGWI	ACGGA	2 cut(s)	180, 273
VpaK11BI	GGWCC	3 cut(s)	73, 140, 432
XapI	RAATTY	1 cut(s)	362
XbaI	TCTAGA	1 cut(s)	512
XceI	RCATGY	1 cut(s)	469
XspI	CTAG	4 cut(s)	6, 212, 513, 601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.