Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0019706

Physical Location & Seq

Genomic Coordinates Reverse (-)

29825916 .. 29826838

Gene Structure 923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g29390.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGAACAAATACAGCACAAGTACATCACCGTACAAGGCCTAAAGCTCCACGTTGCCGACATCGGAACAGGTCCCAATGTGATCGTGTTCCTCGATGGTTTCCCTGAAATTTGGTACTCGTGGCGGCACCAGATGATTGGCCTGGCCCACTCCGGCTTCCGAGCCATTGCTCCCGATTATCGCAGACACGGACTCTCCGACCCGCCTTCCCAACCAGACAAAGCCTCCTACCACGACCTCATCAGTGTCCTCTTTGGAATTCTCGTTTCCCTTGCTATTCCTAAGGTTTTCCTCGTCGGAAAAAAAATTTGGAGCTTGGCCAGCGTACTTATTTTCCCTTGCGTACCCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001676 GO:0002532 GO:0002538 GO:0002539 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006954 GO:0007600 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0019233 GO:0019752 GO:0030258 GO:0032501 GO:0032787 GO:0033559 GO:0042577 GO:0042578 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045777 GO:0046839 GO:0046872 GO:0050877 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

118

Amino Acids

13.13

Weight (kDa)

9.21

Isoelectric Point (pI)

25.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019706)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14140
pyrus_communis	pycom05g29390
rosa_chinensis	RchiOBHm_Chr5g0007851
rosa_multiflora	Rmu_co8357371.1_g000001 Rmu_sc0005098.1_g000010
rosa_samantha	Rh5AG059500 Rh5CG066200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	126
AciI	CCGC	2 cut(s)	124, 203
AcoI	YGGCCR	1 cut(s)	318
AcsI	RAATTY	3 cut(s)	108, 258, 306
AfaI	GTAC	5 cut(s)	23, 33, 116, 327, 345
AjnI	CCWGG	1 cut(s)	141
AjuI	GAANNNNNNNTTGG	2 cut(s)	292, 324
AluBI	AGCT	2 cut(s)	46, 315
AluI	AGCT	2 cut(s)	46, 315
AoxI	GGCC	4 cut(s)	37, 139, 144, 318
ApoI	RAATTY	3 cut(s)	108, 258, 306
AspS9I	GGNCC	2 cut(s)	71, 145
AsuHPI	GGTGA	1 cut(s)	19
AvaII	GGWCC	1 cut(s)	71
AxyI	CCTNAGG	1 cut(s)	282
BalI	TGGCCA	1 cut(s)	320
BanI	GGYRCC	1 cut(s)	126
BauI	CACGAG	1 cut(s)	118
BccI	CCATC	1 cut(s)	89
BciT130I	CCWGG	1 cut(s)	143
BisI	GCNGC	1 cut(s)	125
BlsI	GCNGC	1 cut(s)	126
Bme1390I	CCNGG	1 cut(s)	143
Bme18I	GGWCC	1 cut(s)	71
BmgT120I	GGNCC	2 cut(s)	71, 145
BmiI	GGNNCC	2 cut(s)	73, 128
BmrFI	CCNGG	1 cut(s)	143
BsaXI	ACNNNNNCTCC	4 cut(s)	179, 209, 209, 239
Bse21I	CCTNAGG	1 cut(s)	282
Bse3DI	GCAATG	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	143
BseMI	GCAATG	1 cut(s)	165
BshFI	GGCC	4 cut(s)	39, 141, 146, 320
BshNI	GGYRCC	1 cut(s)	126
BsiSI	CCGG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	57
BsnI	GGCC	4 cut(s)	39, 141, 146, 320
Bsp143I	GATC	1 cut(s)	81
BspACI	CCGC	2 cut(s)	124, 203
BspANI	GGCC	4 cut(s)	39, 141, 146, 320
BspLI	GGNNCC	2 cut(s)	73, 128
BspT107I	GGYRCC	1 cut(s)	126
BsrDI	GCAATG	1 cut(s)	165
BssMI	GATC	1 cut(s)	81
BssSI	CACGAG	1 cut(s)	118
Bst2BI	CACGAG	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	143
Bst4CI	ACNGT	1 cut(s)	31
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	1 cut(s)	282
BstKTI	GATC	1 cut(s)	84
BstMBI	GATC	1 cut(s)	81
BstMWI	GCNNNNNNNGC	1 cut(s)	321
BstNI	CCWGG	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	141
BstXI	CCANNNNNNTGG	1 cut(s)	137
Bsu36I	CCTNAGG	1 cut(s)	282
BsuRI	GGCC	4 cut(s)	39, 141, 146, 320
BtsIMutI	CAGTG	1 cut(s)	250
Cac8I	GCNNGC	1 cut(s)	322
Cfr13I	GGNCC	2 cut(s)	71, 145
Csp6I	GTAC	5 cut(s)	22, 32, 115, 326, 344
CviJI	RGCY	9 cut(s)	39, 46, 141, 146, 156, 164, 224, 315, 320
CviKI_1	RGCY	9 cut(s)	39, 46, 141, 146, 156, 164, 224, 315, 320
CviQI	GTAC	5 cut(s)	22, 32, 115, 326, 344
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
EaeI	YGGCCR	1 cut(s)	318
Eco147I	AGGCCT	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	71
Eco81I	CCTNAGG	1 cut(s)	282
EcoO109I	RGGNCCY	1 cut(s)	71
EcoRI	GAATTC	1 cut(s)	258
EcoRII	CCWGG	1 cut(s)	141
FaqI	GGGAC	1 cut(s)	57
FauI	CCCGC	1 cut(s)	210
Fnu4HI	GCNGC	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	125
GluI	GCNGC	1 cut(s)	125
HaeIII	GGCC	4 cut(s)	39, 141, 146, 320
HapII	CCGG	1 cut(s)	153
HinfI	GANTC	1 cut(s)	192
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	1 cut(s)	19
Hpy188I	TCNGA	4 cut(s)	65, 161, 199, 299
Hpy188III	TCNNGA	1 cut(s)	173
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	1 cut(s)	216
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4IV	ACGT	1 cut(s)	51
HpyF10VI	GCNNNNNNNGC	1 cut(s)	321
HpyF3I	CTNAG	1 cut(s)	282
HpySE526I	ACGT	1 cut(s)	51
Kzo9I	GATC	1 cut(s)	81
LmnI	GCTCC	3 cut(s)	51, 175, 312
LpnPI	CCDG	8 cut(s)	54, 117, 128, 143, 155, 166, 228, 334
MaeII	ACGT	1 cut(s)	51
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MlsI	TGGCCA	1 cut(s)	320
MluCI	AATT	3 cut(s)	108, 258, 306
MluNI	TGGCCA	1 cut(s)	320
MlyI	GAGTC	1 cut(s)	186
MmeI	TCCRAC	2 cut(s)	222, 277
MnlI	CCTC	5 cut(s)	101, 235, 248, 260, 302
Mox20I	TGGCCA	1 cut(s)	320
MscI	TGGCCA	1 cut(s)	320
Msp20I	TGGCCA	1 cut(s)	320
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	1 cut(s)	143
MvaI	CCWGG	1 cut(s)	143
MwoI	GCNNNNNNNGC	1 cut(s)	321
NdeII	GATC	1 cut(s)	81
NlaIV	GGNNCC	2 cut(s)	73, 128
PceI	AGGCCT	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 195
PkrI	GCNGC	1 cut(s)	126
PleI	GAGTC	1 cut(s)	186
PpsI	GAGTC	1 cut(s)	186
PpuMI	RGGWCCY	1 cut(s)	71
Psp5II	RGGWCCY	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	141
PspN4I	GGNNCC	2 cut(s)	73, 128
PspPI	GGNCC	2 cut(s)	71, 145
PspPPI	RGGWCCY	1 cut(s)	71
RsaI	GTAC	5 cut(s)	23, 33, 116, 327, 345
RsaNI	GTAC	5 cut(s)	22, 32, 115, 326, 344
SatI	GCNGC	1 cut(s)	125
Sau3AI	GATC	1 cut(s)	81
Sau96I	GGNCC	2 cut(s)	71, 145
SchI	GAGTC	1 cut(s)	186
ScrFI	CCNGG	1 cut(s)	143
SetI	ASST	6 cut(s)	48, 54, 73, 240, 288, 317
SinI	GGWCC	1 cut(s)	71
Sse9I	AATT	3 cut(s)	108, 258, 306
SseBI	AGGCCT	1 cut(s)	39
SsiI	CCGC	2 cut(s)	124, 203
StuI	AGGCCT	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	141
TaaI	ACNGT	1 cut(s)	31
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	1 cut(s)	93
TasI	AATT	3 cut(s)	108, 258, 306
TatI	WGTACW	1 cut(s)	21
TauI	GCSGC	1 cut(s)	127
TscAI	CASTG	1 cut(s)	250
TspGWI	ACGGA	1 cut(s)	204
TspRI	CASTG	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	71
XapI	RAATTY	3 cut(s)	108, 258, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.