FvH4_5g14840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016580
Physical Location & Seq
Forward (+)
8423077 .. 8424825
1749 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g14840.t1

Sequence Viewer

Length: 276 bp
ATGGCTAGCAGTACTACTCTCCTTCGTCTACTTGTTATCTTGTTAGGGTTTTCTCTCCTCATCTGCGCTAATGCTGTCCCAGTTACAAGAATCGGAGGCCTTAATAAGCATATCGGACCTGAAGTTCATCAAACCGTTGCAGAGAATAACAAGCCGATGACAACAGAGATGAGATTTTCTGAGAGGATGGATGTGGAGCTTAATGACTATCCGGGATCAGGGGCCAACAACCGCCACACTCCGAAGCCTCAATATGCGAGATGTGCTGATTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.0

Weight (kDa)

7.77

Isoelectric Point (pI)

39.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016580)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47510
fragaria_vesca FvH4_5g14840
malus_domestica MD06G1194400.v1.1 MD14G1201500.v1.1
prunus_persica Prupe.5G194500_v2.0.a1
pyrus_communis pycom14g16690
rosa_chinensis RchiOBHm_Chr7g0181551
rosa_multiflora Rmu_sc0004621.1_g000035
rosa_roxburghii Rroxscaffold_3G00271910
rosa_rugosa Rorug06G0442100 Rorug06G0442100
rosa_samantha Rh7AG044300 Rh7DG043900
rosa_wichuraiana Rw7G003670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 28
AciI CCGC 1 cut(s) 232
AclWI GGATC 1 cut(s) 223
AcuI CTGAAG 1 cut(s) 141
AfaI GTAC 1 cut(s) 13
AfiI CCNNNNNNNGG 1 cut(s) 218
AloI GAACNNNNNNTCC 2 cut(s) 108, 140
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
AlwI GGATC 1 cut(s) 223
AoxI GGCC 2 cut(s) 97, 222
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 2 cut(s) 116, 222
AsuC2I CCSGG 1 cut(s) 213
AsuNHI GCTAGC 1 cut(s) 5
AvaII GGWCC 1 cut(s) 116
BccI CCATC 1 cut(s) 181
BcnI CCSGG 1 cut(s) 213
BfaI CTAG 1 cut(s) 6
BmcAI AGTACT 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 213
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 2 cut(s) 116, 222
BmiI GGNNCC 1 cut(s) 223
BmrFI CCNGG 1 cut(s) 213
BmrI ACTGGG 1 cut(s) 74
BmtI GCTAGC 1 cut(s) 9
BmuI ACTGGG 1 cut(s) 74
BpuMI CCSGG 1 cut(s) 213
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse1I ACTGG 1 cut(s) 80
BseGI GGATG 2 cut(s) 192, 196
BseLI CCNNNNNNNGG 1 cut(s) 218
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 80
BseRI GAGGAG 1 cut(s) 47
BshFI GGCC 2 cut(s) 99, 224
BsiSI CCGG 1 cut(s) 212
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 62
BsnI GGCC 2 cut(s) 99, 224
Bsp143I GATC 1 cut(s) 215
BspACI CCGC 1 cut(s) 232
BspANI GGCC 2 cut(s) 99, 224
BspCNI CTCAG 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 223
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 1 cut(s) 223
BsrI ACTGG 1 cut(s) 80
BssMI GATC 1 cut(s) 215
Bst4CI ACNGT 1 cut(s) 136
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 180
BstF5I GGATG 2 cut(s) 192, 196
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 1 cut(s) 218
BstMBI GATC 1 cut(s) 215
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstSCI CCNGG 1 cut(s) 211
BsuRI GGCC 2 cut(s) 99, 224
BtsCI GGATG 2 cut(s) 192, 196
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 68
Cfr13I GGNCC 2 cut(s) 116, 222
Csp6I GTAC 1 cut(s) 12
CviJI RGCY 6 cut(s) 5, 99, 154, 199, 224, 247
CviKI_1 RGCY 6 cut(s) 5, 99, 154, 199, 224, 247
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 1 cut(s) 180
DpnI GATC 1 cut(s) 217
DpnII GATC 1 cut(s) 215
Eco147I AGGCCT 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 141
FaiI YATR 2 cut(s) 111, 255
FaqI GGGAC 1 cut(s) 62
FblI GTMKAC 1 cut(s) 28
FokI GGATG 2 cut(s) 199, 203
FspBI CTAG 1 cut(s) 6
GlaI GCGC 1 cut(s) 67
HaeIII GGCC 2 cut(s) 99, 224
HapII CCGG 1 cut(s) 212
HhaI GCGC 1 cut(s) 68
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HinfI GANTC 1 cut(s) 90
HpaII CCGG 1 cut(s) 212
Hpy166II GTNNAC 1 cut(s) 29
Hpy188I TCNGA 4 cut(s) 95, 116, 181, 243
Hpy8I GTNNAC 1 cut(s) 29
HpyAV CCTTC 1 cut(s) 32
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4V TGCA 1 cut(s) 140
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 1 cut(s) 180
HspAI GCGC 1 cut(s) 66
Kzo9I GATC 1 cut(s) 215
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 4 cut(s) 93, 132, 204, 225
MaeI CTAG 1 cut(s) 6
MaeIII GTNAC 1 cut(s) 82
MalI GATC 1 cut(s) 217
MboI GATC 1 cut(s) 215
MnlI CCTC 4 cut(s) 68, 89, 177, 258
MseI TTAA 2 cut(s) 102, 201
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 1 cut(s) 213
MwoI GCNNNNNNNGC 1 cut(s) 263
NciI CCSGG 1 cut(s) 213
NdeII GATC 1 cut(s) 215
NheI GCTAGC 1 cut(s) 5
NlaIV GGNNCC 1 cut(s) 223
PceI AGGCCT 1 cut(s) 99
PfeI GAWTC 1 cut(s) 90
PfoI TCCNGGA 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 223
PspPI GGNCC 2 cut(s) 116, 222
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SaqAI TTAA 2 cut(s) 102, 201
Sau3AI GATC 1 cut(s) 215
Sau96I GGNCC 2 cut(s) 116, 222
ScaI AGTACT 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 213
SetI ASST 2 cut(s) 121, 201
SinI GGWCC 1 cut(s) 116
SseBI AGGCCT 1 cut(s) 99
SsiI CCGC 1 cut(s) 232
SspMI CTAG 1 cut(s) 6
StuI AGGCCT 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 211
TaaI ACNGT 1 cut(s) 136
TatI WGTACW 1 cut(s) 11
TfiI GAWTC 1 cut(s) 90
Tru1I TTAA 2 cut(s) 102, 201
Tru9I TTAA 2 cut(s) 102, 201
TspDTI ATGAA 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 116
XmiI GTMKAC 1 cut(s) 28
XspI CTAG 1 cut(s) 6
ZrmI AGTACT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.