pycom14g16690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0016580
Physical Location & Seq
Reverse (-)
18883093 .. 18883638
546 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g16690.2

Sequence Viewer

Length: 276 bp
ATGGCAAGCAGTCTCCTTCATGTGCTTGCGATCTTGCTAGGGTTTTCTCACCTTGTCTTCTTGAATGCCATCCCAGCTACAAGAATTGGAAGCCTAAATCATGGACCTCAACTTCATCAAATTGCAGGAAGTAACAAACTGGTAACCACAGAGAAGAGTTATAAAGAGCAAGCTATCACTGAAAGAATGGATGTGGAGCTTCACGACTACCCGGGTTCAGGCGCCAACAACCGCCACACCCCGAGGCCGCAGTCTGAAAGATGCTCCGATTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

9.99

Weight (kDa)

7.01

Isoelectric Point (pI)

37.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016580)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47510
fragaria_vesca FvH4_5g14840
malus_domestica MD06G1194400.v1.1 MD14G1201500.v1.1
prunus_persica Prupe.5G194500_v2.0.a1
pyrus_communis pycom14g16690
rosa_chinensis RchiOBHm_Chr7g0181551
rosa_multiflora Rmu_sc0004621.1_g000035
rosa_roxburghii Rroxscaffold_3G00271910
rosa_rugosa Rorug06G0442100 Rorug06G0442100
rosa_samantha Rh7AG044300 Rh7DG043900
rosa_wichuraiana Rw7G003670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 162
AccB1I GGYRCC 1 cut(s) 221
AciI CCGC 2 cut(s) 232, 248
AcyI GRCGYC 1 cut(s) 222
AfiI CCNNNNNNNGG 1 cut(s) 218
AgsI TTSAA 1 cut(s) 64
AluBI AGCT 3 cut(s) 77, 173, 199
AluI AGCT 3 cut(s) 77, 173, 199
Alw26I GTCTC 1 cut(s) 17
Ama87I CYCGRG 2 cut(s) 211, 241
AoxI GGCC 1 cut(s) 245
AspLEI GCGC 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 104
AsuC2I CCSGG 2 cut(s) 212, 213
AsuHPI GGTGA 1 cut(s) 41
AvaI CYCGRG 2 cut(s) 211, 241
AvaII GGWCC 1 cut(s) 104
BanI GGYRCC 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 49
BccI CCATC 1 cut(s) 77
BcnI CCSGG 2 cut(s) 212, 213
BcoDI GTCTC 1 cut(s) 17
BfaI CTAG 2 cut(s) 38, 274
BfoI RGCGCY 1 cut(s) 225
BisI GCNGC 1 cut(s) 248
BlsI GCNGC 1 cut(s) 249
Bme1390I CCNGG 2 cut(s) 212, 213
Bme18I GGWCC 1 cut(s) 104
BmeT110I CYCGRG 2 cut(s) 211, 241
BmgT120I GGNCC 1 cut(s) 104
BmiI GGNNCC 1 cut(s) 223
BmrFI CCNGG 2 cut(s) 212, 213
BmsI GCATC 1 cut(s) 251
BpiI GAAGAC 1 cut(s) 49
BpuMI CCSGG 2 cut(s) 212, 213
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 211, 242
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse1I ACTGG 1 cut(s) 144
BseDI CCNNGG 2 cut(s) 211, 242
BseGI GGATG 2 cut(s) 69, 196
BseLI CCNNNNNNNGG 1 cut(s) 218
BseNI ACTGG 1 cut(s) 144
BseYI CCCAGC 1 cut(s) 73
BshFI GGCC 1 cut(s) 247
BshNI GGYRCC 1 cut(s) 221
BsiHKCI CYCGRG 2 cut(s) 211, 241
BsiSI CCGG 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 218
BsmAI GTCTC 1 cut(s) 17
BsmI GAATGC 1 cut(s) 70
BsnI GGCC 1 cut(s) 247
BsoBI CYCGRG 2 cut(s) 211, 241
Bsp143I GATC 1 cut(s) 30
BspACI CCGC 2 cut(s) 232, 248
BspANI GGCC 1 cut(s) 247
BspLI GGNNCC 1 cut(s) 223
BspT107I GGYRCC 1 cut(s) 221
BsrI ACTGG 1 cut(s) 144
BssECI CCNNGG 2 cut(s) 211, 242
BssMI GATC 1 cut(s) 30
BssNI GRCGYC 1 cut(s) 222
Bst6I CTCTTC 1 cut(s) 149
BstACI GRCGYC 1 cut(s) 222
BstC8I GCNNGC 3 cut(s) 7, 27, 171
BstEII GGTNACC 1 cut(s) 142
BstF5I GGATG 2 cut(s) 69, 196
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 1 cut(s) 224
BstKTI GATC 1 cut(s) 33
BstMAI GTCTC 1 cut(s) 17
BstMBI GATC 1 cut(s) 30
BstMWI GCNNNNNNNGC 2 cut(s) 74, 270
BstPI GGTNACC 1 cut(s) 142
BstSCI CCNGG 2 cut(s) 210, 211
BstV2I GAAGAC 1 cut(s) 49
BsuRI GGCC 1 cut(s) 247
BtsCI GGATG 2 cut(s) 69, 196
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 3 cut(s) 7, 27, 171
CfoI GCGC 1 cut(s) 224
Cfr13I GGNCC 1 cut(s) 104
Cfr9I CCCGGG 1 cut(s) 211
CviAII CATG 2 cut(s) 20, 101
CviJI RGCY 5 cut(s) 77, 93, 173, 199, 247
CviKI_1 RGCY 5 cut(s) 77, 93, 173, 199, 247
DinI GGCGCC 1 cut(s) 223
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 104
Eco88I CYCGRG 2 cut(s) 211, 241
Eco91I GGTNACC 1 cut(s) 142
EcoO65I GGTNACC 1 cut(s) 142
EgeI GGCGCC 1 cut(s) 223
EheI GGCGCC 1 cut(s) 223
FaeI CATG 2 cut(s) 23, 104
FaiI YATR 3 cut(s) 21, 102, 162
FatI CATG 2 cut(s) 19, 100
Fnu4HI GCNGC 1 cut(s) 248
FokI GGATG 2 cut(s) 56, 203
Fsp4HI GCNGC 1 cut(s) 248
FspBI CTAG 2 cut(s) 38, 274
GlaI GCGC 1 cut(s) 223
GluI GCNGC 1 cut(s) 248
GsaI CCCAGC 1 cut(s) 77
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 1 cut(s) 247
HapII CCGG 1 cut(s) 212
HhaI GCGC 1 cut(s) 224
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 2 cut(s) 23, 104
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HpaII CCGG 1 cut(s) 212
HphI GGTGA 1 cut(s) 41
Hpy188I TCNGA 2 cut(s) 256, 268
Hpy188III TCNNGA 2 cut(s) 61, 203
HpyAV CCTTC 1 cut(s) 26
HpyCH4V TGCA 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 270
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 2 cut(s) 23, 104
HspAI GCGC 1 cut(s) 222
KasI GGCGCC 1 cut(s) 221
Kzo9I GATC 1 cut(s) 30
LmnI GCTCC 2 cut(s) 196, 269
LpnPI CCDG 5 cut(s) 87, 111, 125, 204, 225
LweI GCATC 1 cut(s) 251
MaeI CTAG 2 cut(s) 38, 274
MaeIII GTNAC 2 cut(s) 131, 142
MalI GATC 1 cut(s) 32
MboI GATC 1 cut(s) 30
MboII GAAGA 2 cut(s) 49, 166
MluCI AATT 2 cut(s) 84, 120
Mly113I GGCGCC 1 cut(s) 222
MnlI CCTC 2 cut(s) 117, 237
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 2 cut(s) 212, 213
Mva1269I GAATGC 1 cut(s) 70
MwoI GCNNNNNNNGC 2 cut(s) 74, 270
NarI GGCGCC 1 cut(s) 222
NciI CCSGG 2 cut(s) 212, 213
NdeII GATC 1 cut(s) 30
NlaIII CATG 2 cut(s) 23, 104
NlaIV GGNNCC 1 cut(s) 223
PctI GAATGC 1 cut(s) 70
PkrI GCNGC 1 cut(s) 249
PluTI GGCGCC 1 cut(s) 225
PsiI TTATAA 1 cut(s) 162
PspEI GGTNACC 1 cut(s) 142
PspFI CCCAGC 1 cut(s) 73
PspN4I GGNNCC 1 cut(s) 223
PspPI GGNCC 1 cut(s) 104
SatI GCNGC 1 cut(s) 248
Sau3AI GATC 1 cut(s) 30
Sau96I GGNCC 1 cut(s) 104
ScrFI CCNGG 2 cut(s) 212, 213
SetI ASST 5 cut(s) 54, 79, 109, 175, 201
SfaNI GCATC 1 cut(s) 251
SfoI GGCGCC 1 cut(s) 223
SinI GGWCC 1 cut(s) 104
SmaI CCCGGG 1 cut(s) 213
Sse9I AATT 2 cut(s) 84, 120
SsiI CCGC 2 cut(s) 232, 248
SspDI GGCGCC 1 cut(s) 221
SspMI CTAG 2 cut(s) 38, 274
StyD4I CCNGG 2 cut(s) 210, 211
TasI AATT 2 cut(s) 84, 120
TauI GCSGC 1 cut(s) 250
TscAI CASTG 1 cut(s) 184
TspDTI ATGAA 2 cut(s) 8, 104
TspMI CCCGGG 1 cut(s) 211
TspRI CASTG 1 cut(s) 184
VpaK11BI GGWCC 1 cut(s) 104
XmaI CCCGGG 1 cut(s) 211
XspI CTAG 2 cut(s) 38, 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.