Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001574

Physical Location & Seq

Genomic Coordinates Forward (+)

57410664 .. 57414260

Gene Structure 3597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0442100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGACGATATCAGAGGACGAGGACGAGAGTTTGGCTCAATTCCTTGAAACGGAGGTGCTCTCCGAGGTCTCCGATCAGGAGGAGGAGGAGGAAGATTTGATGATAAAGGAGCCCAACCCTAAGAGAATGCATATGACCGAGGATAAGGCAGAGAATCAGAAAAGCAAAGAAGAAGATAAAGCAAGCTGCTCTTCATCTTCTTCGACCGCCATTGTCAGTAACAACCAGCTCATGAGAATTGACACTGGGATTTTGAGCAAAATCCCACCCGAGCTGTTCCGTCACATCCTCAAGTTCCTATCTTCTGAGGATCTCATTGCTTGTTCACTCGTCTGTAGATTTCTGAATCATGCAGCTTCTGATGAATCCTTGTGGCAACGCTTGTATCGTATGCGATGGGGTCTTTTGCCCCCTACCAGAAAGCTACGCGAATGTCCTTGGAAAAAGCTTTACATTGAGCGTGATGAAGAGGACATGGTGGATCTTGGTAGAAATTGCCCGGTTGAGTTCAAGGAGTACTATGTCCAAATGCAAGCTGCCAAAAGAAGCCAAGCACCTCTTCCTTCACAGGCGAAAGATGATGGGTTAATTCTTGACAAGACAGTAGCGGATCAAGTGTCCATCTGGAAAAGAAGTAAAGGCCTGACTGATAAGGTGGTAACTGATCATACTTGTTCCGGTGAAAAGTGTACTTACTACCAAGTTGGAGATGTGTTTGTTTGCGAGAAGACTGGGCAGGTTCATGTATGTGATGAGTTTTGCAGAGAAGCTGTTATGGATCCCGCTAATATGCTTTGGGTCTGTAGAATATCTGGTCATTGCTTTGATAATGTACTGTCACCACAAGAAGTGGAGTCAGATGCAGAACAGCAACAGGAAGATCCGACAGATGAGCCAGAACCATTCATGGGATCCGGCCGCTTTGCGCGAGCTTATTTGCTGGGATATAACTGTGCGGATGAGAAAGAGCTAGAAGCTACTTGGAGGTTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000188 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006469 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010563 GO:0010605 GO:0010646 GO:0010648 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031347 GO:0031348 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033549 GO:0033550 GO:0033673 GO:0035335 GO:0035556 GO:0036211 GO:0042325 GO:0042326 GO:0042578 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043407 GO:0043408 GO:0043409 GO:0043412 GO:0043549 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045936 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071901 GO:0071944 GO:0080090 GO:0080134 GO:0140096 GO:1901564 GO:1902531 GO:1902532 GO:1990264

KEGG Pathways

Metabolic & Signaling

ko04520 ko04910 ko04931 map04520 map04910 map04931

Pfam Domains

Protein Families

Y_phosphatase

Protein Analysis

331

Amino Acids

38.03

Weight (kDa)

4.67

Isoelectric Point (pI)

55.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	85 - 126	5.1e-09	F-box domain
F-box-like	PF12937	86 - 130	1.2e-13	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71860 AT1G71860 AT1G71860
fragaria_vesca	FvH4_2g12360 FvH4_2g12360 FvH4_2g12360 FvH4_2g12360 FvH4_5g14850 FvH4_5g14850 FvH4_5g14850
malus_domestica	MD05G1039700.v1.1 MD09G1287400.v1.1 MD10G1045300.v1.1
prunus_persica	Prupe.1G402600_v2.0.a1 Prupe.8G052200_v2.0.a1 Prupe.8G052200_v2.0.a1
pyrus_communis	pycom05g03240 pycom10g03170
rosa_chinensis	RchiOBHm_Chr3g0456471 RchiOBHm_Chr6g0272381 RchiOBHm_Chr7g0181531
rosa_laevigata	RLG00000005185 RLG00000013677 RLG00000025303
rosa_multiflora	Rmu_co8205282.1_g000001 Rmu_sc0004621.1_g000033 Rmu_sc0010043.1_g000002 Rmu_sc0023867.1_g000001 Rmu_sc0029422.1_g000002
rosa_roxburghii	Rroxscaffold_3G00271920 Rroxscaffold_6G00422730 Rroxscaffold_7G00196330
rosa_rugosa	Rorug03G0013200 Rorug03G0013300 Rorug06G0068700 Rorug06G0442100
rosa_samantha	Rh3AG073600 Rh3BG075500 Rh3CG075000 Rh3DG076800 Rh6AG184800 Rh6BG188100 Rh6DG177800 Rh7AG044200 Rh7BG043300 Rh7CG045100 Rh7DG043800
rosa_wichuraiana	Rw3G006310 Rw6G015980 Rw7G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	727
AccII	CGCG	2 cut(s)	429, 928
AciI	CCGC	5 cut(s)	207, 608, 783, 919, 956
AclWI	GGATC	8 cut(s)	318, 489, 618, 773, 786, 875, 906, 919
AcoI	YGGCCR	1 cut(s)	916
AfaI	GTAC	3 cut(s)	518, 691, 834
AfiI	CCNNNNNNNGG	2 cut(s)	49, 908
AgsI	TTSAA	2 cut(s)	47, 511
AjuI	GAANNNNNNNTTGG	2 cut(s)	543, 575
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	1 cut(s)	73
AlwI	GGATC	8 cut(s)	318, 489, 618, 773, 786, 875, 906, 919
AlwNI	CAGNNNCTG	1 cut(s)	359
Ama87I	CYCGRG	1 cut(s)	269
AoxI	GGCC	2 cut(s)	640, 916
ApeKI	GCWGC	3 cut(s)	186, 353, 536
AspLEI	GCGC	1 cut(s)	928
AsuC2I	CCSGG	1 cut(s)	500
AsuHPI	GGTGA	2 cut(s)	692, 831
AvaI	CYCGRG	1 cut(s)	269
BaeI	ACNNNNGTAYC	2 cut(s)	368, 401
BamHI	GGATCC	2 cut(s)	778, 911
BanII	GRGCYC	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	734
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	3 cut(s)	173, 365, 523
BccI	CCATC	3 cut(s)	390, 575, 629
BclI	TGATCA	1 cut(s)	664
BcnI	CCSGG	1 cut(s)	500
BcoDI	GTCTC	1 cut(s)	73
BfaI	CTAG	1 cut(s)	971
BfmI	CTRYAG	2 cut(s)	334, 802
BfuAI	ACCTGC	1 cut(s)	727
BisI	GCNGC	4 cut(s)	187, 354, 537, 919
BlsI	GCNGC	4 cut(s)	188, 355, 538, 920
BmcAI	AGTACT	1 cut(s)	518
Bme1390I	CCNGG	1 cut(s)	500
BmeT110I	CYCGRG	1 cut(s)	269
BmiI	GGNNCC	3 cut(s)	111, 780, 913
BmrFI	CCNGG	1 cut(s)	500
BmrI	ACTGGG	2 cut(s)	255, 741
BmsI	GCATC	1 cut(s)	850
BmuI	ACTGGG	2 cut(s)	255, 741
BpiI	GAAGAC	1 cut(s)	734
BplI	GAGNNNNNCTC	4 cut(s)	19, 51, 44, 76
BpuEI	CTTGAG	1 cut(s)	275
BpuMI	CCSGG	1 cut(s)	500
BsaI	GGTCTC	1 cut(s)	73
BsaJI	CCNNGG	3 cut(s)	63, 138, 437
BsaWI	WCCGGW	1 cut(s)	677
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 908
Bse1I	ACTGG	2 cut(s)	250, 736
Bse3DI	GCAATG	2 cut(s)	315, 817
BseDI	CCNNGG	3 cut(s)	63, 138, 437
BseGI	GGATG	2 cut(s)	285, 964
BseLI	CCNNNNNNNGG	2 cut(s)	49, 908
BseMI	GCAATG	2 cut(s)	315, 817
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	2 cut(s)	250, 736
BseRI	GAGGAG	3 cut(s)	95, 98, 101
BseX3I	CGGCCG	1 cut(s)	916
BseXI	GCAGC	3 cut(s)	173, 365, 523
BseYI	CCCAGC	1 cut(s)	940
Bsh1236I	CGCG	2 cut(s)	429, 928
Bsh1285I	CGRYCG	2 cut(s)	207, 919
BshFI	GGCC	2 cut(s)	642, 918
BsiEI	CGRYCG	2 cut(s)	207, 919
BsiHKAI	GWGCWC	1 cut(s)	60
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	3 cut(s)	500, 678, 915
BslI	CCNNNNNNNGG	2 cut(s)	49, 908
BsmAI	GTCTC	1 cut(s)	73
BsmI	GAATGC	1 cut(s)	132
BsnI	GGCC	2 cut(s)	642, 918
Bso31I	GGTCTC	1 cut(s)	73
BsoBI	CYCGRG	1 cut(s)	269
Bsp1286I	GDGCHC	2 cut(s)	60, 114
Bsp143I	GATC	8 cut(s)	73, 310, 481, 610, 664, 778, 880, 911
BspACI	CCGC	5 cut(s)	207, 608, 783, 919, 956
BspANI	GGCC	2 cut(s)	642, 918
BspCNI	CTCAG	1 cut(s)	298
BspFNI	CGCG	2 cut(s)	429, 928
BspHI	TCATGA	1 cut(s)	231
BspLI	GGNNCC	3 cut(s)	111, 780, 913
BspMI	ACCTGC	1 cut(s)	727
BspPI	GGATC	8 cut(s)	318, 489, 618, 773, 786, 875, 906, 919
BspQI	GCTCTTC	1 cut(s)	196
BspTNI	GGTCTC	1 cut(s)	73
BsrDI	GCAATG	2 cut(s)	315, 817
BsrI	ACTGG	2 cut(s)	250, 736
BssECI	CCNNGG	3 cut(s)	63, 138, 437
BssMI	GATC	8 cut(s)	73, 310, 481, 610, 664, 778, 880, 911
BssT1I	CCWWGG	1 cut(s)	437
Bst4CI	ACNGT	3 cut(s)	604, 837, 953
Bst6I	CTCTTC	3 cut(s)	196, 462, 564
BstC8I	GCNNGC	3 cut(s)	184, 534, 930
BstDEI	CTNAG	2 cut(s)	120, 306
BstF5I	GGATG	2 cut(s)	285, 964
BstFNI	CGCG	2 cut(s)	429, 928
BstHHI	GCGC	1 cut(s)	928
BstKTI	GATC	8 cut(s)	76, 313, 484, 613, 667, 781, 883, 914
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	8 cut(s)	73, 310, 481, 610, 664, 778, 880, 911
BstMCI	CGRYCG	2 cut(s)	207, 919
BstSCI	CCNGG	1 cut(s)	498
BstSFI	CTRYAG	2 cut(s)	334, 802
BstUI	CGCG	2 cut(s)	429, 928
BstV1I	GCAGC	3 cut(s)	173, 365, 523
BstV2I	GAAGAC	1 cut(s)	734
BstX2I	RGATCY	5 cut(s)	310, 481, 778, 880, 911
BstYI	RGATCY	5 cut(s)	310, 481, 778, 880, 911
BstZI	CGGCCG	1 cut(s)	916
BsuRI	GGCC	2 cut(s)	642, 918
BtgZI	GCGATG	1 cut(s)	409
BtsCI	GGATG	2 cut(s)	285, 964
BtsIMutI	CAGTG	1 cut(s)	243
BveI	ACCTGC	1 cut(s)	727
Cac8I	GCNNGC	3 cut(s)	184, 534, 930
CaiI	CAGNNNCTG	1 cut(s)	359
CciI	TCATGA	1 cut(s)	231
CfoI	GCGC	1 cut(s)	928
Csp6I	GTAC	3 cut(s)	517, 690, 833
CviAII	CATG	5 cut(s)	232, 350, 475, 743, 907
CviQI	GTAC	3 cut(s)	517, 690, 833
DdeI	CTNAG	2 cut(s)	120, 306
DpnI	GATC	8 cut(s)	75, 312, 483, 612, 666, 780, 882, 913
DpnII	GATC	8 cut(s)	73, 310, 481, 610, 664, 778, 880, 911
EaeI	YGGCCR	1 cut(s)	916
EagI	CGGCCG	1 cut(s)	916
Eam1104I	CTCTTC	3 cut(s)	196, 462, 564
EarI	CTCTTC	3 cut(s)	196, 462, 564
EclXI	CGGCCG	1 cut(s)	916
Eco130I	CCWWGG	1 cut(s)	437
Eco147I	AGGCCT	1 cut(s)	642
Eco24I	GRGCYC	1 cut(s)	114
Eco31I	GGTCTC	1 cut(s)	73
Eco32I	GATATC	1 cut(s)	9
Eco52I	CGGCCG	1 cut(s)	916
Eco88I	CYCGRG	1 cut(s)	269
EcoRV	GATATC	1 cut(s)	9
EcoT14I	CCWWGG	1 cut(s)	437
EcoT22I	ATGCAT	1 cut(s)	132
EcoT38I	GRGCYC	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	437
FaeI	CATG	5 cut(s)	235, 353, 478, 746, 910
FalI	AAGNNNNNCTT	4 cut(s)	175, 207, 543, 575
FatI	CATG	5 cut(s)	231, 349, 474, 742, 906
FauI	CCCGC	1 cut(s)	790
FauNDI	CATATG	1 cut(s)	132
FbaI	TGATCA	1 cut(s)	664
Fnu4HI	GCNGC	4 cut(s)	187, 354, 537, 919
FokI	GGATG	2 cut(s)	272, 971
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	4 cut(s)	187, 354, 537, 919
FspBI	CTAG	1 cut(s)	971
GlaI	GCGC	1 cut(s)	927
GluI	GCNGC	4 cut(s)	187, 354, 537, 919
GsaI	CCCAGC	1 cut(s)	944
HaeIII	GGCC	2 cut(s)	642, 918
HapII	CCGG	3 cut(s)	500, 678, 915
HhaI	GCGC	1 cut(s)	928
Hin1II	CATG	5 cut(s)	235, 353, 478, 746, 910
Hin6I	GCGC	1 cut(s)	926
HinP1I	GCGC	1 cut(s)	926
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	4 cut(s)	154, 346, 365, 854
HpaII	CCGG	3 cut(s)	500, 678, 915
HphI	GGTGA	2 cut(s)	692, 831
Hpy166II	GTNNAC	2 cut(s)	326, 690
Hpy188I	TCNGA	9 cut(s)	13, 64, 73, 159, 307, 345, 361, 859, 885
Hpy188III	TCNNGA	4 cut(s)	77, 232, 593, 625
Hpy8I	GTNNAC	2 cut(s)	326, 690
HpyAV	CCTTC	1 cut(s)	573
HpyCH4III	ACNGT	3 cut(s)	604, 837, 953
HpyCH4V	TGCA	5 cut(s)	130, 353, 532, 762, 863
HpyF3I	CTNAG	2 cut(s)	120, 306
Hsp92II	CATG	5 cut(s)	235, 353, 478, 746, 910
HspAI	GCGC	1 cut(s)	926
Ksp22I	TGATCA	1 cut(s)	664
Kzo9I	GATC	8 cut(s)	73, 310, 481, 610, 664, 778, 880, 911
LguI	GCTCTTC	1 cut(s)	196
LmnI	GCTCC	1 cut(s)	109
Lsp1109I	GCAGC	3 cut(s)	173, 365, 523
LweI	GCATC	1 cut(s)	850
MaeI	CTAG	1 cut(s)	971
MaeIII	GTNAC	4 cut(s)	218, 281, 658, 837
MalI	GATC	8 cut(s)	75, 312, 483, 612, 666, 780, 882, 913
MboI	GATC	8 cut(s)	73, 310, 481, 610, 664, 778, 880, 911
MflI	RGATCY	5 cut(s)	310, 481, 778, 880, 911
MhlI	GDGCHC	2 cut(s)	60, 114
MluCI	AATT	4 cut(s)	38, 237, 493, 588
MlyI	GAGTC	1 cut(s)	863
MmeI	TCCRAC	2 cut(s)	685, 908
Mph1103I	ATGCAT	1 cut(s)	132
MseI	TTAA	1 cut(s)	587
MslI	CAYNNNNRTG	1 cut(s)	747
MspI	CCGG	3 cut(s)	500, 678, 915
MspR9I	CCNGG	1 cut(s)	500
Mva1269I	GAATGC	1 cut(s)	132
MvnI	CGCG	2 cut(s)	429, 928
NciI	CCSGG	1 cut(s)	500
NdeI	CATATG	1 cut(s)	132
NdeII	GATC	8 cut(s)	73, 310, 481, 610, 664, 778, 880, 911
NlaIII	CATG	5 cut(s)	235, 353, 478, 746, 910
NlaIV	GGNNCC	3 cut(s)	111, 780, 913
NmuCI	GTSAC	2 cut(s)	281, 837
NsiI	ATGCAT	1 cut(s)	132
PagI	TCATGA	1 cut(s)	231
PceI	AGGCCT	1 cut(s)	642
PciSI	GCTCTTC	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	385
PctI	GAATGC	1 cut(s)	132
PfeI	GAWTC	3 cut(s)	154, 346, 365
PkrI	GCNGC	4 cut(s)	188, 355, 538, 920
PleI	GAGTC	1 cut(s)	862
PpsI	GAGTC	1 cut(s)	862
PspFI	CCCAGC	1 cut(s)	940
PspN4I	GGNNCC	3 cut(s)	111, 780, 913
PstNI	CAGNNNCTG	1 cut(s)	359
PsuI	RGATCY	5 cut(s)	310, 481, 778, 880, 911
RsaI	GTAC	3 cut(s)	518, 691, 834
RsaNI	GTAC	3 cut(s)	517, 690, 833
RseI	CAYNNNNRTG	1 cut(s)	747
SapI	GCTCTTC	1 cut(s)	196
SaqAI	TTAA	1 cut(s)	587
SatI	GCNGC	4 cut(s)	187, 354, 537, 919
Sau3AI	GATC	8 cut(s)	73, 310, 481, 610, 664, 778, 880, 911
ScaI	AGTACT	1 cut(s)	518
SchI	GAGTC	1 cut(s)	863
ScrFI	CCNGG	1 cut(s)	500
SduI	GDGCHC	2 cut(s)	60, 114
SfaNI	GCATC	1 cut(s)	850
SfcI	CTRYAG	2 cut(s)	334, 802
SmiMI	CAYNNNNRTG	1 cut(s)	747
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	4 cut(s)	38, 237, 493, 588
SseBI	AGGCCT	1 cut(s)	642
SsiI	CCGC	5 cut(s)	207, 608, 783, 919, 956
SspMI	CTAG	1 cut(s)	971
StuI	AGGCCT	1 cut(s)	642
StyD4I	CCNGG	1 cut(s)	498
StyI	CCWWGG	1 cut(s)	437
TaaI	ACNGT	3 cut(s)	604, 837, 953
TaqI	TCGA	1 cut(s)	203
TaqII	GACCGA	1 cut(s)	152
TasI	AATT	4 cut(s)	38, 237, 493, 588
TatI	WGTACW	3 cut(s)	516, 689, 832
TauI	GCSGC	1 cut(s)	921
TfiI	GAWTC	3 cut(s)	154, 346, 365
Tru1I	TTAA	1 cut(s)	587
Tru9I	TTAA	1 cut(s)	587
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	2 cut(s)	281, 837
TseI	GCWGC	3 cut(s)	186, 353, 536
Tsp45I	GTSAC	2 cut(s)	281, 837
TspDTI	ATGAA	5 cut(s)	183, 378, 480, 731, 895
TspGWI	ACGGA	2 cut(s)	65, 269
TspRI	CASTG	1 cut(s)	250
XspI	CTAG	1 cut(s)	971
ZrmI	AGTACT	1 cut(s)	518
Zsp2I	ATGCAT	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.