Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001574

Physical Location & Seq

Genomic Coordinates Reverse (-)

31265261 .. 31269411

Gene Structure 4151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG177800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGAAGAGAAGTTGCACTGTGGCTCTGGACCCTGTCAATGTCACCAAAAATCGCTACACCGATGTCTTACCATTTGATCAAAATAGGGTCGTTCTCAAGTCTTGTAAAGATTACAGACCTGAAGCAAGGGGCTACATCAATGGCAGCTACATCTCGGCTTGTTCCTCTGAAAGCATTTCTAGGTTTATAGCTACACAAGGTCCACTTCCGCATACCTATGAGGATTTCTGGGAGATGGTACTTGAGAACCATTGCCCTGTAGTGGTCATGCTTACTCGCTTAGTCGACTATTACAAGATGGTCAAGTGTGGAGATTATTTTCAGGCAGAAGATGGTCCTAGAGAATTCGGTAATATAACCATAGCCACCAAGTGGACAAGAACCACTTGCACTTCATTAGTATTGCGCCTTCTGGAGGTCAGCAGTAAGGAGTTAGAGGAACCATCAATGTCTGTGCTGCATATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCCACAGATACAATTGCTGTTCGTGAAATATTGAAGTCAATATATCAAGTTCCACCCAACCTTGGCCCAGTAGTGGTGCACTGCAGTGCAGGTATTGGGAGGACTGGAACATACTGCACAATTCATAATACAATTCAGAGAATTCTTTCTGGGGACATGTCTGCTTTAGATCTTGCTAATACAATAACCACGTTTAGGACTGAGCGTATTGGAATGGTGCAGACACTGGTATCTTCTTCCCTGTTTGCCATATTGCTGTTTAATTCTTCCCTTTTAGGGTCGTTTTTTTTTTTTTTCCTCCTCTTCTCCAATAAGACTTCTCTTTTATGCTTCAAACTGGATTATTGTAGAAATACGCGATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000188 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006469 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010563 GO:0010605 GO:0010646 GO:0010648 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031347 GO:0031348 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033549 GO:0033550 GO:0033673 GO:0035335 GO:0035556 GO:0036211 GO:0042325 GO:0042326 GO:0042578 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043407 GO:0043408 GO:0043409 GO:0043412 GO:0043549 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045936 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071901 GO:0071944 GO:0080090 GO:0080134 GO:0140096 GO:1901564 GO:1902531 GO:1902532 GO:1990264

KEGG Pathways

Metabolic & Signaling

ko04520 ko04910 ko04931 map04520 map04910 map04931

Pfam Domains

Protein Families

Y_phosphatase

Protein Analysis

286

Amino Acids

32.43

Weight (kDa)

7.53

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Y_phosphatase	PF00102	13 - 241	4.2e-65	Protein-tyrosine phosphatase
Tc-R-P	PF22785	144 - 203	1.5e-06	Polymorphic toxin system, DSP-PTPase phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71860 AT1G71860 AT1G71860
fragaria_vesca	FvH4_2g12360 FvH4_2g12360 FvH4_2g12360 FvH4_2g12360 FvH4_5g14850 FvH4_5g14850 FvH4_5g14850
malus_domestica	MD05G1039700.v1.1 MD09G1287400.v1.1 MD10G1045300.v1.1
prunus_persica	Prupe.1G402600_v2.0.a1 Prupe.8G052200_v2.0.a1 Prupe.8G052200_v2.0.a1
pyrus_communis	pycom05g03240 pycom10g03170
rosa_chinensis	RchiOBHm_Chr3g0456471 RchiOBHm_Chr6g0272381 RchiOBHm_Chr7g0181531
rosa_laevigata	RLG00000005185 RLG00000013677 RLG00000025303
rosa_multiflora	Rmu_co8205282.1_g000001 Rmu_sc0004621.1_g000033 Rmu_sc0010043.1_g000002 Rmu_sc0023867.1_g000001 Rmu_sc0029422.1_g000002
rosa_roxburghii	Rroxscaffold_3G00271920 Rroxscaffold_6G00422730 Rroxscaffold_7G00196330
rosa_rugosa	Rorug03G0013200 Rorug03G0013300 Rorug06G0068700 Rorug06G0442100
rosa_samantha	Rh3AG073600 Rh3BG075500 Rh3CG075000 Rh3DG076800 Rh6AG184800 Rh6BG188100 Rh6DG177800 Rh7AG044200 Rh7BG043300 Rh7CG045100 Rh7DG043800
rosa_wichuraiana	Rw3G006310 Rw6G015980 Rw7G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	575
AccB7I	CCANNNNNTGG	1 cut(s)	372
AccI	GTMKAC	1 cut(s)	285
AccII	CGCG	1 cut(s)	853
AciI	CCGC	1 cut(s)	209
AcsI	RAATTY	2 cut(s)	344, 636
AcuI	CTGAAG	1 cut(s)	141
AdeI	CACNNNGTG	1 cut(s)	372
AfaI	GTAC	1 cut(s)	240
AfiI	CCNNNNNNNGG	8 cut(s)	262, 372, 415, 488, 557, 568, 690, 771
AflIII	ACRYGT	1 cut(s)	651
AgsI	TTSAA	2 cut(s)	529, 829
AleI	CACNNNNGTG	1 cut(s)	579
AluBI	AGCT	2 cut(s)	147, 191
AluI	AGCT	2 cut(s)	147, 191
Alw21I	GWGCWC	1 cut(s)	576
Alw44I	GTGCAC	1 cut(s)	572
AlwNI	CAGNNNCTG	1 cut(s)	721
AoxI	GGCC	2 cut(s)	479, 559
ApaLI	GTGCAC	1 cut(s)	572
ApeKI	GCWGC	2 cut(s)	144, 457
ApoI	RAATTY	2 cut(s)	344, 636
Asp700I	GAANNNNTTC	1 cut(s)	640
AspLEI	GCGC	1 cut(s)	408
AspS9I	GGNCC	4 cut(s)	28, 200, 335, 560
AsuHPI	GGTGA	1 cut(s)	34
AvaII	GGWCC	3 cut(s)	28, 200, 335
BaeGI	GKGCMC	1 cut(s)	576
BaeI	ACNNNNGTAYC	2 cut(s)	708, 741
BarI	GAAGNNNNNNTAC	2 cut(s)	393, 425
Bbv12I	GWGCWC	1 cut(s)	576
BbvI	GCAGC	2 cut(s)	156, 444
BccI	CCATC	4 cut(s)	229, 292, 326, 451
BciVI	GTATCC	1 cut(s)	480
BclI	TGATCA	1 cut(s)	76
BfaI	CTAG	2 cut(s)	180, 339
BfmI	CTRYAG	2 cut(s)	258, 577
BfuAI	ACCTGC	1 cut(s)	575
BfuI	GTATCC	1 cut(s)	480
BglII	AGATCT	1 cut(s)	664
BisI	GCNGC	2 cut(s)	145, 458
BlsI	GCNGC	2 cut(s)	146, 459
Bme18I	GGWCC	3 cut(s)	28, 200, 335
BmgT120I	GGNCC	4 cut(s)	28, 200, 335, 560
BmiI	GGNNCC	2 cut(s)	30, 441
BmrI	ACTGGG	1 cut(s)	557
BmuI	ACTGGG	1 cut(s)	557
BpmI	CTGGAG	1 cut(s)	434
BpuEI	CTTGAG	2 cut(s)	80, 263
BsaJI	CCNNGG	2 cut(s)	487, 556
Bsc4I	CCNNNNNNNGG	8 cut(s)	262, 372, 415, 488, 557, 568, 690, 771
Bse1I	ACTGG	4 cut(s)	563, 604, 726, 837
Bse3DI	GCAATG	1 cut(s)	250
BseDI	CCNNGG	2 cut(s)	487, 556
BseLI	CCNNNNNNNGG	8 cut(s)	262, 372, 415, 488, 557, 568, 690, 771
BseMI	GCAATG	1 cut(s)	250
BseMII	CTCAG	1 cut(s)	687
BseNI	ACTGG	4 cut(s)	563, 604, 726, 837
BseRI	GAGGAG	1 cut(s)	785
BseSI	GKGCMC	1 cut(s)	576
BseXI	GCAGC	2 cut(s)	156, 444
BsgI	GTGCAG	3 cut(s)	595, 603, 734
Bsh1236I	CGCG	1 cut(s)	853
BshFI	GGCC	2 cut(s)	481, 561
BsiHKAI	GWGCWC	1 cut(s)	576
BslFI	GGGAC	1 cut(s)	662
BslI	CCNNNNNNNGG	8 cut(s)	262, 372, 415, 488, 557, 568, 690, 771
BsmFI	GGGAC	1 cut(s)	662
BsnI	GGCC	2 cut(s)	481, 561
Bsp1286I	GDGCHC	1 cut(s)	576
Bsp143I	GATC	2 cut(s)	76, 664
Bsp19I	CCATGG	1 cut(s)	487
BspACI	CCGC	1 cut(s)	209
BspANI	GGCC	2 cut(s)	481, 561
BspCNI	CTCAG	1 cut(s)	688
BspFNI	CGCG	1 cut(s)	853
BspLI	GGNNCC	2 cut(s)	30, 441
BspMAI	CTGCAG	1 cut(s)	581
BspMI	ACCTGC	1 cut(s)	575
BsrDI	GCAATG	1 cut(s)	250
BsrI	ACTGG	4 cut(s)	563, 604, 726, 837
BssECI	CCNNGG	2 cut(s)	487, 556
BssMI	GATC	2 cut(s)	76, 664
BssT1I	CCWWGG	2 cut(s)	487, 556
Bst4CI	ACNGT	1 cut(s)	19
Bst6I	CTCTTC	1 cut(s)	803
BstDEI	CTNAG	2 cut(s)	280, 696
BstDSI	CCRYGG	1 cut(s)	487
BstENI	CCTNNNNNAGG	1 cut(s)	413
BstFNI	CGCG	1 cut(s)	853
BstHHI	GCGC	1 cut(s)	408
BstKTI	GATC	2 cut(s)	79, 667
BstMBI	GATC	2 cut(s)	76, 664
BstNSI	RCATGY	1 cut(s)	655
BstSFI	CTRYAG	2 cut(s)	258, 577
BstSLI	GKGCMC	1 cut(s)	576
BstUI	CGCG	1 cut(s)	853
BstV1I	GCAGC	2 cut(s)	156, 444
BstX2I	RGATCY	1 cut(s)	664
BstYI	RGATCY	1 cut(s)	664
BsuI	GTATCC	1 cut(s)	480
BsuRI	GGCC	2 cut(s)	481, 561
BtgI	CCRYGG	1 cut(s)	487
BtsI	GCAGTG	2 cut(s)	574, 586
BtsIMutI	CAGTG	4 cut(s)	15, 574, 586, 719
BveI	ACCTGC	1 cut(s)	575
CaiI	CAGNNNCTG	1 cut(s)	721
CfoI	GCGC	1 cut(s)	408
Cfr13I	GGNCC	4 cut(s)	28, 200, 335, 560
Csp6I	GTAC	1 cut(s)	239
CviAII	CATG	3 cut(s)	268, 488, 652
CviJI	RGCY	8 cut(s)	23, 132, 147, 158, 191, 365, 481, 561
CviKI_1	RGCY	8 cut(s)	23, 132, 147, 158, 191, 365, 481, 561
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	2 cut(s)	280, 696
DpnI	GATC	2 cut(s)	78, 666
DpnII	GATC	2 cut(s)	76, 664
DraIII	CACNNNGTG	1 cut(s)	372
Eam1104I	CTCTTC	1 cut(s)	803
EarI	CTCTTC	1 cut(s)	803
Eco130I	CCWWGG	2 cut(s)	487, 556
Eco47I	GGWCC	3 cut(s)	28, 200, 335
Eco57I	CTGAAG	1 cut(s)	141
EcoNI	CCTNNNNNAGG	1 cut(s)	413
EcoRI	GAATTC	2 cut(s)	344, 636
EcoT14I	CCWWGG	2 cut(s)	487, 556
ErhI	CCWWGG	2 cut(s)	487, 556
FaeI	CATG	3 cut(s)	271, 491, 655
FalI	AAGNNNNNCTT	4 cut(s)	189, 221, 370, 402
FaqI	GGGAC	1 cut(s)	662
FatI	CATG	3 cut(s)	267, 487, 651
FbaI	TGATCA	1 cut(s)	76
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	2 cut(s)	145, 458
Fsp4HI	GCNGC	2 cut(s)	145, 458
FspBI	CTAG	2 cut(s)	180, 339
GlaI	GCGC	1 cut(s)	407
GluI	GCNGC	2 cut(s)	145, 458
GsuI	CTGGAG	1 cut(s)	434
HaeIII	GGCC	2 cut(s)	481, 561
HhaI	GCGC	1 cut(s)	408
Hin1II	CATG	3 cut(s)	271, 491, 655
Hin6I	GCGC	1 cut(s)	406
HinP1I	GCGC	1 cut(s)	406
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	4 cut(s)	203, 286, 375, 574
Hpy188I	TCNGA	2 cut(s)	169, 633
Hpy188III	TCNNGA	4 cut(s)	26, 413, 473, 518
Hpy8I	GTNNAC	4 cut(s)	203, 286, 375, 574
HpyAV	CCTTC	1 cut(s)	419
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4IV	ACGT	1 cut(s)	686
HpyCH4V	TGCA	8 cut(s)	15, 390, 460, 574, 579, 584, 612, 715
HpyF3I	CTNAG	2 cut(s)	280, 696
HpySE526I	ACGT	1 cut(s)	686
Hsp92II	CATG	3 cut(s)	271, 491, 655
HspAI	GCGC	1 cut(s)	406
Ksp22I	TGATCA	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	76, 664
Lsp1109I	GCAGC	2 cut(s)	156, 444
MaeI	CTAG	2 cut(s)	180, 339
MaeII	ACGT	1 cut(s)	686
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	2 cut(s)	78, 666
MboI	GATC	2 cut(s)	76, 664
MboII	GAAGA	6 cut(s)	16, 341, 720, 723, 753, 790
MfeI	CAATTG	1 cut(s)	507
MflI	RGATCY	1 cut(s)	664
MhlI	GDGCHC	1 cut(s)	576
MluCI	AATT	6 cut(s)	344, 507, 615, 627, 636, 757
MnlI	CCTC	7 cut(s)	175, 214, 409, 430, 588, 803, 806
MroXI	GAANNNNTTC	1 cut(s)	640
MseI	TTAA	2 cut(s)	756, 859
MslI	CAYNNNNRTG	2 cut(s)	216, 579
MunI	CAATTG	1 cut(s)	507
MvnI	CGCG	1 cut(s)	853
NcoI	CCATGG	1 cut(s)	487
NdeII	GATC	2 cut(s)	76, 664
NlaIII	CATG	3 cut(s)	271, 491, 655
NlaIV	GGNNCC	2 cut(s)	30, 441
NmeAIII	GCCGAG	1 cut(s)	134
NmuCI	GTSAC	1 cut(s)	40
NspI	RCATGY	1 cut(s)	655
OliI	CACNNNNGTG	1 cut(s)	579
PciI	ACATGT	1 cut(s)	651
PdmI	GAANNNNTTC	1 cut(s)	640
PflFI	GACNNNGTC	1 cut(s)	32
PflMI	CCANNNNNTGG	1 cut(s)	372
PkrI	GCNGC	2 cut(s)	146, 459
PscI	ACATGT	1 cut(s)	651
PspN4I	GGNNCC	2 cut(s)	30, 441
PspPI	GGNCC	4 cut(s)	28, 200, 335, 560
PstI	CTGCAG	1 cut(s)	581
PstNI	CAGNNNCTG	1 cut(s)	721
PsuI	RGATCY	1 cut(s)	664
PsyI	GACNNNGTC	1 cut(s)	32
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
RseI	CAYNNNNRTG	2 cut(s)	216, 579
SalI	GTCGAC	1 cut(s)	284
SaqAI	TTAA	2 cut(s)	756, 859
SatI	GCNGC	2 cut(s)	145, 458
Sau3AI	GATC	2 cut(s)	76, 664
Sau96I	GGNCC	4 cut(s)	28, 200, 335, 560
SduI	GDGCHC	1 cut(s)	576
SfcI	CTRYAG	2 cut(s)	258, 577
SinI	GGWCC	3 cut(s)	28, 200, 335
SmiMI	CAYNNNNRTG	2 cut(s)	216, 579
SmlI	CTYRAG	2 cut(s)	95, 242
SmoI	CTYRAG	2 cut(s)	95, 242
Sse9I	AATT	6 cut(s)	344, 507, 615, 627, 636, 757
SsiI	CCGC	1 cut(s)	209
SspI	AATATT	1 cut(s)	525
SspMI	CTAG	2 cut(s)	180, 339
StyI	CCWWGG	2 cut(s)	487, 556
TaaI	ACNGT	1 cut(s)	19
TaiI	ACGT	1 cut(s)	689
TaqI	TCGA	1 cut(s)	285
TasI	AATT	6 cut(s)	344, 507, 615, 627, 636, 757
Tru1I	TTAA	2 cut(s)	756, 859
Tru9I	TTAA	2 cut(s)	756, 859
TscAI	CASTG	4 cut(s)	22, 581, 586, 726
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	2 cut(s)	144, 457
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	3 cut(s)	17, 384, 608
TspRI	CASTG	4 cut(s)	22, 581, 586, 726
Tth111I	GACNNNGTC	1 cut(s)	32
Van91I	CCANNNNNTGG	1 cut(s)	372
VneI	GTGCAC	1 cut(s)	572
VpaK11BI	GGWCC	3 cut(s)	28, 200, 335
XagI	CCTNNNNNAGG	1 cut(s)	413
XapI	RAATTY	2 cut(s)	344, 636
XceI	RCATGY	1 cut(s)	655
XmiI	GTMKAC	1 cut(s)	285
XmnI	GAANNNNTTC	1 cut(s)	640
XspI	CTAG	2 cut(s)	180, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.