Rorug03G0013300

Protein-tyrosine-phosphatase PTP1-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
1036772 .. 1037104
333 bp
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UTR
Exon/CDS
Intron
Rorug03G0013300.1

Sequence Viewer

Length: 333 bp
ATGGGGAAGCGACGCCGGTGTGATAGTGGAGGAGAACCCTTGCCCAAGAAACGTCACCTAAATTATTTATCCAAACTATTCTATGACGAATTTTCGTATGAAGAAGAAGAGGATGAAGTGTTGTTCTCTTCCTCCTCTGAAGAAGAAGAGATGAACCAAGAATTGCAACTAGACTATGAGCTAGAGGAAGAGCCAAATAACGAACCAAGTACTGCTTTTGGTTCATTCCCACCCGTCAAGGAAAATTCTGCTGTCAGGACTTTTACTGAACAAGAAGTGCTTCATTGCTCAATTTGCAATGAACCCTTGACCACCACCACCCATATTTTCTAA

Protein Analysis

110

Amino Acids

12.82

Weight (kDa)

4.43

Isoelectric Point (pI)

96.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 89, 244
AcuI CTGAAG 1 cut(s) 159
AcyI GRCGYC 1 cut(s) 13
AfaI GTAC 1 cut(s) 211
AluBI AGCT 1 cut(s) 181
AluI AGCT 1 cut(s) 181
ApoI RAATTY 2 cut(s) 89, 244
Asp700I GAANNNNTTC 1 cut(s) 279
AsuHPI GGTGA 1 cut(s) 47
BfaI CTAG 2 cut(s) 170, 182
BmcAI AGTACT 1 cut(s) 211
BsaHI GRCGYC 1 cut(s) 13
Bse118I RCCGGY 1 cut(s) 15
Bse3DI GCAATG 2 cut(s) 283, 304
BseGI GGATG 1 cut(s) 118
BseMI GCAATG 2 cut(s) 283, 304
BseRI GAGGAG 2 cut(s) 45, 124
BsiSI CCGG 1 cut(s) 16
BspQI GCTCTTC 1 cut(s) 183
BsrDI GCAATG 2 cut(s) 283, 304
BsrFI RCCGGY 1 cut(s) 15
BssAI RCCGGY 1 cut(s) 15
BssNI GRCGYC 1 cut(s) 13
Bst6I CTCTTC 4 cut(s) 102, 133, 141, 183
BstACI GRCGYC 1 cut(s) 13
BstF5I GGATG 1 cut(s) 118
BstMWI GCNNNNNNNGC 1 cut(s) 294
BtsCI GGATG 1 cut(s) 118
Cfr10I RCCGGY 1 cut(s) 15
CseI GACGC 1 cut(s) 21
Csp6I GTAC 1 cut(s) 210
CviJI RGCY 2 cut(s) 181, 193
CviKI_1 RGCY 2 cut(s) 181, 193
CviQI GTAC 1 cut(s) 210
Eam1104I CTCTTC 4 cut(s) 102, 133, 141, 183
EarI CTCTTC 4 cut(s) 102, 133, 141, 183
Eco57I CTGAAG 1 cut(s) 159
FaiI YATR 4 cut(s) 84, 99, 177, 324
FalI AAGNNNNNCTT 4 cut(s) 199, 231, 264, 296
FokI GGATG 1 cut(s) 125
FspBI CTAG 2 cut(s) 170, 182
HapII CCGG 1 cut(s) 16
HgaI GACGC 1 cut(s) 21
Hin1I GRCGYC 1 cut(s) 13
HpaII CCGG 1 cut(s) 16
HphI GGTGA 1 cut(s) 47
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 1 cut(s) 256
Hpy99I CGWCG 1 cut(s) 15
HpyCH4IV ACGT 1 cut(s) 52
HpyCH4V TGCA 2 cut(s) 166, 297
HpyF10VI GCNNNNNNNGC 1 cut(s) 294
HpySE526I ACGT 1 cut(s) 52
Hsp92I GRCGYC 1 cut(s) 13
LguI GCTCTTC 1 cut(s) 183
LpnPI CCDG 2 cut(s) 29, 241
MaeI CTAG 2 cut(s) 170, 182
MaeII ACGT 1 cut(s) 52
MaeIII GTNAC 1 cut(s) 53
MboII GAAGA 8 cut(s) 113, 116, 119, 120, 152, 155, 158, 200
MluCI AATT 5 cut(s) 61, 89, 161, 244, 291
MnlI CCTC 5 cut(s) 23, 103, 142, 145, 178
MroXI GAANNNNTTC 1 cut(s) 279
MspI CCGG 1 cut(s) 16
MwoI GCNNNNNNNGC 1 cut(s) 294
NmuCI GTSAC 1 cut(s) 53
PciSI GCTCTTC 1 cut(s) 183
PdmI GAANNNNTTC 1 cut(s) 279
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
SapI GCTCTTC 1 cut(s) 183
ScaI AGTACT 1 cut(s) 211
SetI ASST 3 cut(s) 55, 60, 183
SgrAI CRCCGGYG 1 cut(s) 15
Sse9I AATT 5 cut(s) 61, 89, 161, 244, 291
SspMI CTAG 2 cut(s) 170, 182
TaiI ACGT 1 cut(s) 55
TasI AATT 5 cut(s) 61, 89, 161, 244, 291
TatI WGTACW 1 cut(s) 209
TseFI GTSAC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 6 cut(s) 114, 129, 167, 213, 272, 315
XapI RAATTY 2 cut(s) 89, 244
XmnI GAANNNNTTC 1 cut(s) 279
XspI CTAG 2 cut(s) 170, 182
ZrmI AGTACT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.