MD10G1045300.v1.1

Protein-tyrosine-phosphatase PTP1-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
6061385 .. 6066657
5273 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1045300.v1.1.491

Sequence Viewer

Length: 1020 bp
ATGGCCGCCACCGCCTCTTCCGCCGCAGCCAAACCCCGCCCTTCCTTGAAAGTCTCGGCCGATGCTCCGCCTCCGAAACTCGCCCTCACCCCCGACCAGTACAAGTACTGCTCTCAGGCTCTCAAGCTCTTCAAAGAAAAGCTCCAGATGCCTGACCATATCAAACAGGAGTTCGCTCAGCTACAGGCCAAGAGGATTACATTATCTGAGATGAAGAGGAACTGCACTGTGGCTCTTGACAGTGTCAATTCCGGCAAAAACCGATACACTGATGTCGTACCATTTGACAAAAATAGGGTTGTTCTCAACTCCTGTAAGGATTACAGACCTTCTGCGAGGGGCTACATCAACGCCAGCTTAATCGCGACTAGTTCATCCGAAAGCATTTCTCGATTTATAGCAACACAAGGTCCACTTCCGCACACATATGAGGATTTCTGGGAGATGGTACTTGAGCAACGCTGCCCGGTGGTCATCATGCTTACTCGCTTAGTTGACTGTTACACGATGGTTAAATGTGGAGATTATTTTCAGGCTGAAGATGGCCCTAGGGAATTCGGTAACATATGCATAAGCACCAAGTGGCTAAGAACTACTGACACTTCATTAGTGTTGCGCCTTTTGGAGGTTAACTCCAAAGAGTCCGAAGAACCACCCATGTCTGTTTTGCATATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCAAAGAACACATTTGTGGTCCGTGAAATCTTGAAAAGAATATATCAAGTACCACCAAACCTTGGCCCAATTGTGGTGCATTGCAGTGCAGGTATTGGGAGAACTGGAACATACTGCTCAATTCATAATGCAGTACAAAGAATTCTTGCTGGGGACATGTCTGCTTTAAATCTTGTTGATACAATAACCACATTTAGGTCTCAGCGAATTGGAATGGTCCAGACACTGGAGCAATATATTTTCTGTTATTCTGCCATAGTTGATGAATTGGAAGAGCTCATGTCAAATTTGAATAGCGAAACGAACTCAAAATAG

Protein Analysis

340

Amino Acids

38.1

Weight (kDa)

7.98

Isoelectric Point (pI)

42.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Y_phosphatase PF00102 83 - 322 3.6e-71 Protein-tyrosine phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 785
AccB7I CCANNNNNTGG 2 cut(s) 767, 931
AccII CGCG 1 cut(s) 365
AciI CCGC 7 cut(s) 6, 12, 21, 24, 37, 68, 419
AcoI YGGCCR 2 cut(s) 3, 57
AcsI RAATTY 3 cut(s) 554, 846, 991
AcuI CTGAAG 1 cut(s) 558
AdeI CACNNNGTG 1 cut(s) 582
AfaI GTAC 6 cut(s) 101, 107, 279, 450, 756, 840
AfiI CCNNNNNNNGG 6 cut(s) 625, 698, 767, 778, 900, 931
AflIII ACRYGT 1 cut(s) 861
AgsI TTSAA 4 cut(s) 49, 133, 739, 997
AhlI ACTAGT 1 cut(s) 368
AleI CACNNNNGTG 1 cut(s) 719
AluBI AGCT 5 cut(s) 127, 142, 181, 357, 982
AluI AGCT 5 cut(s) 127, 142, 181, 357, 982
Alw21I GWGCWC 1 cut(s) 984
Alw26I GTCTC 2 cut(s) 58, 909
AlwNI CAGNNNCTG 1 cut(s) 931
AoxI GGCC 6 cut(s) 3, 57, 186, 544, 689, 769
ApeKI GCWGC 2 cut(s) 26, 462
ApoI RAATTY 3 cut(s) 554, 846, 991
AspA2I CCTAGG 1 cut(s) 548
AspLEI GCGC 1 cut(s) 618
AspS9I GGNCC 5 cut(s) 410, 545, 724, 770, 922
AsuC2I CCSGG 1 cut(s) 467
AsuHPI GGTGA 1 cut(s) 79
AvaII GGWCC 3 cut(s) 410, 724, 922
AvrII CCTAGG 1 cut(s) 548
BanII GRGCYC 1 cut(s) 984
Bbv12I GWGCWC 1 cut(s) 984
BbvI GCAGC 2 cut(s) 38, 449
BccI CCATC 3 cut(s) 439, 502, 536
BciVI GTATCC 1 cut(s) 690
BcnI CCSGG 1 cut(s) 467
BcoDI GTCTC 2 cut(s) 58, 909
BcuI ACTAGT 1 cut(s) 368
BfaI CTAG 2 cut(s) 369, 549
BfmI CTRYAG 1 cut(s) 182
BfuAI ACCTGC 1 cut(s) 785
BfuI GTATCC 1 cut(s) 690
BisI GCNGC 4 cut(s) 6, 24, 27, 463
BlnI CCTAGG 1 cut(s) 548
BlpI GCTNAGC 1 cut(s) 177
BlsI GCNGC 4 cut(s) 7, 25, 28, 464
BmcAI AGTACT 1 cut(s) 107
Bme1390I CCNGG 1 cut(s) 467
Bme18I GGWCC 3 cut(s) 410, 724, 922
BmgT120I GGNCC 5 cut(s) 410, 545, 724, 770, 922
BmrFI CCNGG 1 cut(s) 467
BmsI GCATC 2 cut(s) 52, 138
BplI GAGNNNNNCTC 2 cut(s) 617, 649
BpmI CTGGAG 2 cut(s) 128, 953
Bpu1102I GCTNAGC 1 cut(s) 177
BpuEI CTTGAG 2 cut(s) 107, 473
BpuMI CCSGG 1 cut(s) 467
BsaI GGTCTC 1 cut(s) 909
BsaJI CCNNGG 3 cut(s) 548, 697, 766
Bsc4I CCNNNNNNNGG 6 cut(s) 625, 698, 767, 778, 900, 931
Bse1I ACTGG 3 cut(s) 97, 814, 936
Bse3DI GCAATG 1 cut(s) 784
BseDI CCNNGG 3 cut(s) 548, 697, 766
BseGI GGATG 1 cut(s) 374
BseLI CCNNNNNNNGG 6 cut(s) 625, 698, 767, 778, 900, 931
BseMI GCAATG 1 cut(s) 784
BseMII CTCAG 4 cut(s) 128, 191, 198, 920
BseNI ACTGG 3 cut(s) 97, 814, 936
BseX3I CGGCCG 1 cut(s) 57
BseXI GCAGC 2 cut(s) 38, 449
BseYI CCCAGC 1 cut(s) 854
BsgI GTGCAG 2 cut(s) 208, 813
Bsh1236I CGCG 1 cut(s) 365
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 6 cut(s) 5, 59, 188, 546, 691, 771
BsiEI CGRYCG 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 984
BsiSI CCGG 2 cut(s) 252, 467
BslFI GGGAC 1 cut(s) 872
BslI CCNNNNNNNGG 6 cut(s) 625, 698, 767, 778, 900, 931
BsmAI GTCTC 2 cut(s) 58, 909
BsmFI GGGAC 1 cut(s) 872
BsnI GGCC 6 cut(s) 5, 59, 188, 546, 691, 771
Bso31I GGTCTC 1 cut(s) 909
Bsp1286I GDGCHC 1 cut(s) 984
Bsp1720I GCTNAGC 1 cut(s) 177
Bsp19I CCATGG 1 cut(s) 697
Bsp68I TCGCGA 1 cut(s) 365
BspACI CCGC 7 cut(s) 6, 12, 21, 24, 37, 68, 419
BspANI GGCC 6 cut(s) 5, 59, 188, 546, 691, 771
BspCNI CTCAG 4 cut(s) 127, 190, 199, 919
BspFNI CGCG 1 cut(s) 365
BspMI ACCTGC 1 cut(s) 785
BspQI GCTCTTC 2 cut(s) 134, 972
BspTNI GGTCTC 1 cut(s) 909
BsrDI GCAATG 1 cut(s) 784
BsrI ACTGG 3 cut(s) 97, 814, 936
BssECI CCNNGG 3 cut(s) 548, 697, 766
BssT1I CCWWGG 3 cut(s) 548, 697, 766
Bst4CI ACNGT 3 cut(s) 229, 242, 500
Bst6I CTCTTC 4 cut(s) 22, 134, 209, 972
BstC8I GCNNGC 1 cut(s) 355
BstDEI CTNAG 6 cut(s) 114, 177, 207, 490, 587, 906
BstDSI CCRYGG 1 cut(s) 697
BstENI CCTNNNNNAGG 1 cut(s) 623
BstF5I GGATG 1 cut(s) 374
BstFNI CGCG 1 cut(s) 365
BstHHI GCGC 1 cut(s) 618
BstMAI GTCTC 2 cut(s) 58, 909
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 3 cut(s) 11, 20, 148
BstNSI RCATGY 1 cut(s) 865
BstSCI CCNGG 1 cut(s) 465
BstSFI CTRYAG 1 cut(s) 182
BstUI CGCG 1 cut(s) 365
BstV1I GCAGC 2 cut(s) 38, 449
BstZI CGGCCG 1 cut(s) 57
BsuI GTATCC 1 cut(s) 690
BsuRI GGCC 6 cut(s) 5, 59, 188, 546, 691, 771
BtgI CCRYGG 1 cut(s) 697
BtsCI GGATG 1 cut(s) 374
BtsI GCAGTG 1 cut(s) 796
BtsIMutI CAGTG 5 cut(s) 225, 247, 267, 796, 929
BtuMI TCGCGA 1 cut(s) 365
BveI ACCTGC 1 cut(s) 785
Cac8I GCNNGC 1 cut(s) 355
CaiI CAGNNNCTG 1 cut(s) 931
CfoI GCGC 1 cut(s) 618
Cfr13I GGNCC 5 cut(s) 410, 545, 724, 770, 922
Csp6I GTAC 6 cut(s) 100, 106, 278, 449, 755, 839
CviAII CATG 5 cut(s) 478, 658, 698, 862, 985
CviQI GTAC 6 cut(s) 100, 106, 278, 449, 755, 839
DdeI CTNAG 6 cut(s) 114, 177, 207, 490, 587, 906
DraI TTTAAA 1 cut(s) 873
DraIII CACNNNGTG 1 cut(s) 582
EaeI YGGCCR 2 cut(s) 3, 57
EagI CGGCCG 1 cut(s) 57
Eam1104I CTCTTC 4 cut(s) 22, 134, 209, 972
EarI CTCTTC 4 cut(s) 22, 134, 209, 972
EciI GGCGGA 2 cut(s) 10, 57
Ecl136II GAGCTC 1 cut(s) 982
EclXI CGGCCG 1 cut(s) 57
Eco130I CCWWGG 3 cut(s) 548, 697, 766
Eco24I GRGCYC 1 cut(s) 984
Eco31I GGTCTC 1 cut(s) 909
Eco47I GGWCC 3 cut(s) 410, 724, 922
Eco52I CGGCCG 1 cut(s) 57
Eco53kI GAGCTC 1 cut(s) 982
Eco57I CTGAAG 1 cut(s) 558
EcoICRI GAGCTC 1 cut(s) 982
EcoNI CCTNNNNNAGG 1 cut(s) 623
EcoRI GAATTC 2 cut(s) 554, 846
EcoT14I CCWWGG 3 cut(s) 548, 697, 766
EcoT22I ATGCAT 1 cut(s) 572
EcoT38I GRGCYC 1 cut(s) 984
ErhI CCWWGG 3 cut(s) 548, 697, 766
FaeI CATG 5 cut(s) 481, 661, 701, 865, 988
FalI AAGNNNNNCTT 2 cut(s) 399, 431
FaqI GGGAC 1 cut(s) 872
FatI CATG 5 cut(s) 477, 657, 697, 861, 984
FauI CCCGC 1 cut(s) 44
FauNDI CATATG 2 cut(s) 427, 566
Fnu4HI GCNGC 4 cut(s) 6, 24, 27, 463
FokI GGATG 1 cut(s) 361
FriOI GRGCYC 1 cut(s) 984
Fsp4HI GCNGC 4 cut(s) 6, 24, 27, 463
FspBI CTAG 2 cut(s) 369, 549
GlaI GCGC 1 cut(s) 617
GluI GCNGC 4 cut(s) 6, 24, 27, 463
GsaI CCCAGC 1 cut(s) 858
GsuI CTGGAG 2 cut(s) 128, 953
HaeIII GGCC 6 cut(s) 5, 59, 188, 546, 691, 771
HapII CCGG 2 cut(s) 252, 467
HhaI GCGC 1 cut(s) 618
Hin1II CATG 5 cut(s) 481, 661, 701, 865, 988
Hin6I GCGC 1 cut(s) 616
HinP1I GCGC 1 cut(s) 616
HincII GTYRAC 2 cut(s) 496, 631
HindII GTYRAC 2 cut(s) 496, 631
HinfI GANTC 1 cut(s) 641
HpaI GTTAAC 1 cut(s) 631
HpaII CCGG 2 cut(s) 252, 467
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 3 cut(s) 413, 496, 631
Hpy188I TCNGA 4 cut(s) 75, 208, 379, 646
Hpy188III TCNNGA 7 cut(s) 145, 236, 364, 390, 683, 736, 925
Hpy8I GTNNAC 3 cut(s) 413, 496, 631
HpyAV CCTTC 2 cut(s) 51, 339
HpyCH4III ACNGT 3 cut(s) 229, 242, 500
HpyCH4V TGCA 7 cut(s) 225, 570, 670, 784, 789, 794, 836
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 20, 148
HpyF3I CTNAG 6 cut(s) 114, 177, 207, 490, 587, 906
Hsp92II CATG 5 cut(s) 481, 661, 701, 865, 988
HspAI GCGC 1 cut(s) 616
KspAI GTTAAC 1 cut(s) 631
LguI GCTCTTC 2 cut(s) 134, 972
LmnI GCTCC 3 cut(s) 70, 147, 934
Lsp1109I GCAGC 2 cut(s) 38, 449
LweI GCATC 2 cut(s) 52, 138
MaeI CTAG 2 cut(s) 369, 549
MaeIII GTNAC 2 cut(s) 500, 560
MboII GAAGA 6 cut(s) 9, 121, 226, 551, 659, 989
MfeI CAATTG 1 cut(s) 774
MhlI GDGCHC 1 cut(s) 984
MluCI AATT 8 cut(s) 247, 554, 774, 825, 846, 912, 971, 991
MlyI GAGTC 1 cut(s) 650
MnlI CCTC 8 cut(s) 25, 81, 95, 186, 210, 330, 424, 619
Mph1103I ATGCAT 1 cut(s) 572
MseI TTAA 4 cut(s) 359, 513, 630, 872
MslI CAYNNNNRTG 3 cut(s) 426, 719, 789
MspI CCGG 2 cut(s) 252, 467
MspR9I CCNGG 1 cut(s) 467
MunI CAATTG 1 cut(s) 774
MvnI CGCG 1 cut(s) 365
MwoI GCNNNNNNNGC 3 cut(s) 11, 20, 148
NciI CCSGG 1 cut(s) 467
NcoI CCATGG 1 cut(s) 697
NdeI CATATG 2 cut(s) 427, 566
NlaIII CATG 5 cut(s) 481, 661, 701, 865, 988
NmeAIII GCCGAG 1 cut(s) 35
NruI TCGCGA 1 cut(s) 365
NsiI ATGCAT 1 cut(s) 572
NspI RCATGY 1 cut(s) 865
OliI CACNNNNGTG 1 cut(s) 719
PciI ACATGT 1 cut(s) 861
PciSI GCTCTTC 2 cut(s) 134, 972
PflFI GACNNNGTC 1 cut(s) 242
PflMI CCANNNNNTGG 2 cut(s) 767, 931
PkrI GCNGC 4 cut(s) 7, 25, 28, 464
PleI GAGTC 1 cut(s) 649
PpsI GAGTC 1 cut(s) 649
PscI ACATGT 1 cut(s) 861
Psp124BI GAGCTC 1 cut(s) 984
PspFI CCCAGC 1 cut(s) 854
PspPI GGNCC 5 cut(s) 410, 545, 724, 770, 922
PstNI CAGNNNCTG 1 cut(s) 931
PsyI GACNNNGTC 1 cut(s) 242
RruI TCGCGA 1 cut(s) 365
RsaI GTAC 6 cut(s) 101, 107, 279, 450, 756, 840
RsaNI GTAC 6 cut(s) 100, 106, 278, 449, 755, 839
RseI CAYNNNNRTG 3 cut(s) 426, 719, 789
SacI GAGCTC 1 cut(s) 984
SapI GCTCTTC 2 cut(s) 134, 972
SaqAI TTAA 4 cut(s) 359, 513, 630, 872
SatI GCNGC 4 cut(s) 6, 24, 27, 463
Sau96I GGNCC 5 cut(s) 410, 545, 724, 770, 922
ScaI AGTACT 1 cut(s) 107
SchI GAGTC 1 cut(s) 650
ScrFI CCNGG 1 cut(s) 467
SduI GDGCHC 1 cut(s) 984
SfaNI GCATC 2 cut(s) 52, 138
SfcI CTRYAG 1 cut(s) 182
SinI GGWCC 3 cut(s) 410, 724, 922
SmiMI CAYNNNNRTG 3 cut(s) 426, 719, 789
SmlI CTYRAG 2 cut(s) 122, 452
SmoI CTYRAG 2 cut(s) 122, 452
SpeI ACTAGT 1 cut(s) 368
Sse9I AATT 8 cut(s) 247, 554, 774, 825, 846, 912, 971, 991
SsiI CCGC 7 cut(s) 6, 12, 21, 24, 37, 68, 419
SspMI CTAG 2 cut(s) 369, 549
SstI GAGCTC 1 cut(s) 984
StyD4I CCNGG 1 cut(s) 465
StyI CCWWGG 3 cut(s) 548, 697, 766
TaaI ACNGT 3 cut(s) 229, 242, 500
TaqI TCGA 1 cut(s) 391
TasI AATT 8 cut(s) 247, 554, 774, 825, 846, 912, 971, 991
TatI WGTACW 3 cut(s) 99, 105, 838
TauI GCSGC 2 cut(s) 8, 26
Tru1I TTAA 4 cut(s) 359, 513, 630, 872
Tru9I TTAA 4 cut(s) 359, 513, 630, 872
TscAI CASTG 5 cut(s) 232, 247, 274, 796, 936
TseI GCWGC 2 cut(s) 26, 462
TspDTI ATGAA 5 cut(s) 227, 363, 594, 818, 984
TspGWI ACGGA 1 cut(s) 716
TspRI CASTG 5 cut(s) 232, 247, 274, 796, 936
Tth111I GACNNNGTC 1 cut(s) 242
Van91I CCANNNNNTGG 2 cut(s) 767, 931
VpaK11BI GGWCC 3 cut(s) 410, 724, 922
XagI CCTNNNNNAGG 1 cut(s) 623
XapI RAATTY 3 cut(s) 554, 846, 991
XceI RCATGY 1 cut(s) 865
XmaJI CCTAGG 1 cut(s) 548
XspI CTAG 2 cut(s) 369, 549
ZrmI AGTACT 1 cut(s) 107
Zsp2I ATGCAT 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.