MD09G1287400.v1.1

Protein-tyrosine-phosphatase PTP1-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
36748549 .. 36749673
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1287400.v1.1.491

Sequence Viewer

Length: 1125 bp
ATGCAGGACCCGGAGGAGGAGACCAAGAGGAGGAGGAGGGAGATGCCGGAGGAGAAGGACACCAAACGGCCAAAATCCATGACACTGGCCACCATCCCTTCCTTGGAGGACTCGTTGGCCAGTACTTGTTTGACCAGAGTTGCCCTTACCCCCCAACAGCACGAAAACTGTGCCTTTGCTCTCAAATTCTTCAAAGACAAGCTCCGGATGCCCGAACAGATCAACCGAGAGTGGGATCAGTTAGATGCCATTTATATAACACAATCCGAGGCGGACAAGCGTTGCACTGTGGCTCTCAACACTCTCAATTTCTGCAAAAACCGGTATGATGAATACGTAGCGTTCGATGAAAATAGGGTTGTTCTTAAATCTTGTGCGGCAGGGGCAGGGGACTATATCAATGCCAGCTTCATCACAACACCATCTTCCTCTTCTTGTTTTATTGCAACACAAGGTCCACTTTCACACACCTTTGAAGCTTTCTGGGAGATGGTCATCCAGTACCGTTGCTCTGTAATTGTCATGCTTACTGACTTGGATGATAACAAATGTGGAGATTATTTTCAGGCCGATGACAAGGACGGCATTAGTAGTAGAGAATTTGGGAATATATGTGTAGCCACTAAGTGGATAAGAGGAGTTGGTGAATTTGGAGATGGTAATTCGGATTCACTAGTATTGCGCCTTTTGGAGGTGAAGAAGAATAATAATAAAGAACAGTCATCAGACTCGGACTCGGAGGAACCTTCACCACCCATGTCTGTTTTGCACATTCAGTATCCTCAATGGCCCGACCATGGAGTTCCCGAAGACACGTTTGCGGTTCGTGGAATTTTGAAAAGAGTAATGTATCAGGAAGCACTCGCCATACCCGACTGCGGCCCAATTGTGGTGCACTGCAGTGCAGGTGTTGGGAGAACTGGAACGTACTGCACCATTCATGATACACTGCAGAGAATTCTTTCGGGGGACACGTCTGCTTTAGATTTAGTAAAAACAATAACCACATTCAGGTCTCAGCGAGATGGAATGGTCCAGAAACCGGAGCAATATCGTTTCTGTTATGATGCCATCATTGATGAATTGGAAGAGCTCATCTTGGATGGATCCCCACTTGGCAGTTGA

Protein Analysis

375

Amino Acids

42.13

Weight (kDa)

4.88

Isoelectric Point (pI)

52.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Y_phosphatase PF00102 103 - 359 5.7e-65 Protein-tyrosine phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 896
Acc36I ACCTGC 1 cut(s) 896
AccB7I CCANNNNNTGG 1 cut(s) 627
AccIII TCCGGA 1 cut(s) 204
AciI CCGC 4 cut(s) 272, 377, 821, 879
AclWI GGATC 3 cut(s) 243, 1101, 1114
AcoI YGGCCR 3 cut(s) 68, 87, 117
AcsI RAATTY 5 cut(s) 185, 599, 647, 831, 957
AdeI CACNNNGTG 1 cut(s) 627
AfaI GTAC 3 cut(s) 124, 503, 929
AflIII ACRYGT 2 cut(s) 813, 972
AgeI ACCGGT 1 cut(s) 321
AgsI TTSAA 3 cut(s) 193, 476, 838
AhlI ACTAGT 1 cut(s) 673
AjiI CACGTC 1 cut(s) 975
AleI CACNNNNGTG 1 cut(s) 900
AluBI AGCT 4 cut(s) 202, 408, 479, 1093
AluI AGCT 4 cut(s) 202, 408, 479, 1093
Alw21I GWGCWC 2 cut(s) 897, 1095
Alw26I GTCTC 2 cut(s) 14, 1020
Alw44I GTGCAC 1 cut(s) 893
AlwI GGATC 3 cut(s) 243, 1101, 1114
Aor13HI TCCGGA 1 cut(s) 204
AoxI GGCC 6 cut(s) 68, 87, 117, 567, 788, 880
ApaLI GTGCAC 1 cut(s) 893
ApoI RAATTY 5 cut(s) 185, 599, 647, 831, 957
AsiGI ACCGGT 1 cut(s) 321
Asp700I GAANNNNTTC 1 cut(s) 961
AspLEI GCGC 1 cut(s) 684
AspS9I GGNCC 5 cut(s) 7, 455, 789, 881, 1033
AsuC2I CCSGG 1 cut(s) 11
AsuHPI GGTGA 3 cut(s) 656, 706, 741
AvaII GGWCC 3 cut(s) 7, 455, 1033
BaeGI GKGCMC 1 cut(s) 897
BalI TGGCCA 2 cut(s) 89, 119
BamHI GGATCC 1 cut(s) 1106
BanII GRGCYC 1 cut(s) 1095
BbsI GAAGAC 1 cut(s) 816
Bbv12I GWGCWC 2 cut(s) 897, 1095
BccI CCATC 7 cut(s) 101, 430, 484, 650, 1019, 1079, 1097
BceAI ACGGC 2 cut(s) 83, 598
BcgI CGANNNNNNTGC 2 cut(s) 152, 186
BciVI GTATCC 1 cut(s) 789
BcnI CCSGG 1 cut(s) 11
BcoDI GTCTC 2 cut(s) 14, 1020
BcuI ACTAGT 1 cut(s) 673
BfaI CTAG 1 cut(s) 674
BfmI CTRYAG 2 cut(s) 898, 950
BfuAI ACCTGC 1 cut(s) 896
BfuI GTATCC 1 cut(s) 789
BisI GCNGC 2 cut(s) 378, 880
BlsI GCNGC 2 cut(s) 379, 881
BmcAI AGTACT 1 cut(s) 124
Bme1390I CCNGG 1 cut(s) 11
Bme18I GGWCC 3 cut(s) 7, 455, 1033
BmgBI CACGTC 1 cut(s) 975
BmgT120I GGNCC 5 cut(s) 7, 455, 789, 881, 1033
BmiI GGNNCC 3 cut(s) 9, 744, 1108
BmrFI CCNGG 1 cut(s) 11
BmsI GCATC 4 cut(s) 33, 198, 235, 1057
BpiI GAAGAC 1 cut(s) 816
BpuMI CCSGG 1 cut(s) 11
BsaAI YACGTR 1 cut(s) 337
BsaBI GATNNNNATC 1 cut(s) 494
BsaI GGTCTC 2 cut(s) 14, 1020
BsaJI CCNNGG 3 cut(s) 102, 267, 796
BsaWI WCCGGW 3 cut(s) 204, 321, 1042
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bse118I RCCGGY 1 cut(s) 321
Bse1I ACTGG 4 cut(s) 90, 120, 499, 925
Bse8I GATNNNNATC 1 cut(s) 494
BseAI TCCGGA 1 cut(s) 204
BseDI CCNNGG 3 cut(s) 102, 267, 796
BseGI GGATG 5 cut(s) 93, 213, 495, 544, 1108
BseJI GATNNNNATC 1 cut(s) 494
BseMII CTCAG 1 cut(s) 1031
BseNI ACTGG 4 cut(s) 90, 120, 499, 925
BseRI GAGGAG 7 cut(s) 29, 32, 43, 46, 49, 65, 651
BseSI GKGCMC 1 cut(s) 897
BsgI GTGCAG 2 cut(s) 916, 924
BshFI GGCC 6 cut(s) 70, 89, 119, 569, 790, 882
BshTI ACCGGT 1 cut(s) 321
BsiHKAI GWGCWC 2 cut(s) 897, 1095
BsiSI CCGG 5 cut(s) 11, 47, 205, 322, 1043
BslFI GGGAC 2 cut(s) 404, 983
BsmAI GTCTC 2 cut(s) 14, 1020
BsmFI GGGAC 2 cut(s) 404, 983
BsnI GGCC 6 cut(s) 70, 89, 119, 569, 790, 882
Bso31I GGTCTC 2 cut(s) 14, 1020
Bsp1286I GDGCHC 2 cut(s) 897, 1095
Bsp13I TCCGGA 1 cut(s) 204
Bsp143I GATC 3 cut(s) 219, 235, 1106
Bsp19I CCATGG 1 cut(s) 796
BspACI CCGC 4 cut(s) 272, 377, 821, 879
BspANI GGCC 6 cut(s) 70, 89, 119, 569, 790, 882
BspCNI CTCAG 1 cut(s) 1030
BspEI TCCGGA 1 cut(s) 204
BspHI TCATGA 1 cut(s) 940
BspLI GGNNCC 3 cut(s) 9, 744, 1108
BspMAI CTGCAG 2 cut(s) 902, 954
BspMI ACCTGC 1 cut(s) 896
BspPI GGATC 3 cut(s) 243, 1101, 1114
BspQI GCTCTTC 1 cut(s) 1083
BspTNI GGTCTC 2 cut(s) 14, 1020
BsrFI RCCGGY 1 cut(s) 321
BsrI ACTGG 4 cut(s) 90, 120, 499, 925
BssAI RCCGGY 1 cut(s) 321
BssECI CCNNGG 3 cut(s) 102, 267, 796
BssMI GATC 3 cut(s) 219, 235, 1106
BssT1I CCWWGG 2 cut(s) 102, 796
Bst4CI ACNGT 4 cut(s) 170, 289, 506, 720
Bst6I CTCTTC 2 cut(s) 436, 1083
BstBAI YACGTR 1 cut(s) 337
BstC8I GCNNGC 1 cut(s) 406
BstDEI CTNAG 2 cut(s) 624, 1017
BstDSI CCRYGG 1 cut(s) 796
BstENI CCTNNNNNAGG 1 cut(s) 689
BstF5I GGATG 5 cut(s) 93, 213, 495, 544, 1108
BstHHI GCGC 1 cut(s) 684
BstKTI GATC 3 cut(s) 222, 238, 1109
BstMAI GTCTC 2 cut(s) 14, 1020
BstMBI GATC 3 cut(s) 219, 235, 1106
BstMWI GCNNNNNNNGC 2 cut(s) 208, 383
BstSCI CCNGG 1 cut(s) 9
BstSFI CTRYAG 2 cut(s) 898, 950
BstSLI GKGCMC 1 cut(s) 897
BstSNI TACGTA 1 cut(s) 337
BstV2I GAAGAC 1 cut(s) 816
BstX2I RGATCY 1 cut(s) 1106
BstXI CCANNNNNNTGG 1 cut(s) 85
BstYI RGATCY 1 cut(s) 1106
BsuI GTATCC 1 cut(s) 789
BsuRI GGCC 6 cut(s) 70, 89, 119, 569, 790, 882
BtgI CCRYGG 1 cut(s) 796
BtrI CACGTC 1 cut(s) 975
BtsCI GGATG 5 cut(s) 93, 213, 495, 544, 1108
BtsI GCAGTG 3 cut(s) 895, 907, 947
BtsIMutI CAGTG 5 cut(s) 83, 285, 895, 907, 947
BveI ACCTGC 1 cut(s) 896
Cac8I GCNNGC 1 cut(s) 406
CciI TCATGA 1 cut(s) 940
CfoI GCGC 1 cut(s) 684
Cfr10I RCCGGY 1 cut(s) 321
Cfr13I GGNCC 5 cut(s) 7, 455, 789, 881, 1033
Csp6I GTAC 3 cut(s) 123, 502, 928
CspAI ACCGGT 1 cut(s) 321
CviAII CATG 5 cut(s) 79, 523, 757, 797, 941
CviQI GTAC 3 cut(s) 123, 502, 928
DdeI CTNAG 2 cut(s) 624, 1017
DpnI GATC 3 cut(s) 221, 237, 1108
DpnII GATC 3 cut(s) 219, 235, 1106
DraIII CACNNNGTG 1 cut(s) 627
EaeI YGGCCR 3 cut(s) 68, 87, 117
Eam1104I CTCTTC 2 cut(s) 436, 1083
EarI CTCTTC 2 cut(s) 436, 1083
EciI GGCGGA 1 cut(s) 287
Ecl136II GAGCTC 1 cut(s) 1093
Eco105I TACGTA 1 cut(s) 337
Eco130I CCWWGG 2 cut(s) 102, 796
Eco24I GRGCYC 1 cut(s) 1095
Eco31I GGTCTC 2 cut(s) 14, 1020
Eco47I GGWCC 3 cut(s) 7, 455, 1033
Eco53kI GAGCTC 1 cut(s) 1093
EcoICRI GAGCTC 1 cut(s) 1093
EcoNI CCTNNNNNAGG 1 cut(s) 689
EcoO109I RGGNCCY 1 cut(s) 7
EcoRI GAATTC 1 cut(s) 957
EcoT14I CCWWGG 2 cut(s) 102, 796
EcoT38I GRGCYC 1 cut(s) 1095
ErhI CCWWGG 2 cut(s) 102, 796
FaeI CATG 5 cut(s) 82, 526, 760, 800, 944
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FaqI GGGAC 2 cut(s) 404, 983
FatI CATG 5 cut(s) 78, 522, 756, 796, 940
Fnu4HI GCNGC 2 cut(s) 378, 880
FokI GGATG 5 cut(s) 80, 220, 482, 551, 1115
FriOI GRGCYC 1 cut(s) 1095
Fsp4HI GCNGC 2 cut(s) 378, 880
FspBI CTAG 1 cut(s) 674
GlaI GCGC 1 cut(s) 683
GluI GCNGC 2 cut(s) 378, 880
HaeIII GGCC 6 cut(s) 70, 89, 119, 569, 790, 882
HapII CCGG 5 cut(s) 11, 47, 205, 322, 1043
HhaI GCGC 1 cut(s) 684
Hin1II CATG 5 cut(s) 82, 526, 760, 800, 944
Hin6I GCGC 1 cut(s) 682
HinP1I GCGC 1 cut(s) 682
HindIII AAGCTT 1 cut(s) 477
HinfI GANTC 4 cut(s) 110, 668, 728, 734
HpaII CCGG 5 cut(s) 11, 47, 205, 322, 1043
HphI GGTGA 3 cut(s) 656, 706, 741
Hpy166II GTNNAC 2 cut(s) 458, 895
Hpy188I TCNGA 5 cut(s) 268, 667, 727, 733, 739
Hpy188III TCNNGA 5 cut(s) 205, 806, 854, 941, 1036
Hpy8I GTNNAC 2 cut(s) 458, 895
HpyAV CCTTC 3 cut(s) 49, 108, 756
HpyCH4III ACNGT 4 cut(s) 170, 289, 506, 720
HpyCH4IV ACGT 4 cut(s) 336, 815, 926, 974
HpyF10VI GCNNNNNNNGC 2 cut(s) 208, 383
HpyF3I CTNAG 2 cut(s) 624, 1017
HpySE526I ACGT 4 cut(s) 336, 815, 926, 974
Hsp92II CATG 5 cut(s) 82, 526, 760, 800, 944
HspAI GCGC 1 cut(s) 682
Kpn2I TCCGGA 1 cut(s) 204
Kzo9I GATC 3 cut(s) 219, 235, 1106
LguI GCTCTTC 1 cut(s) 1083
LmnI GCTCC 2 cut(s) 207, 1045
LweI GCATC 4 cut(s) 33, 198, 235, 1057
MaeI CTAG 1 cut(s) 674
MaeII ACGT 4 cut(s) 336, 815, 926, 974
MalI GATC 3 cut(s) 221, 237, 1108
MboI GATC 3 cut(s) 219, 235, 1106
MboII GAAGA 7 cut(s) 181, 417, 423, 709, 712, 821, 1100
MfeI CAATTG 1 cut(s) 885
MflI RGATCY 1 cut(s) 1106
MhlI GDGCHC 2 cut(s) 897, 1095
MlsI TGGCCA 2 cut(s) 89, 119
MluNI TGGCCA 2 cut(s) 89, 119
MlyI GAGTC 3 cut(s) 104, 722, 728
Mox20I TGGCCA 2 cut(s) 89, 119
MroI TCCGGA 1 cut(s) 204
MroXI GAANNNNTTC 1 cut(s) 961
MscI TGGCCA 2 cut(s) 89, 119
MseI TTAA 1 cut(s) 366
MslI CAYNNNNRTG 1 cut(s) 900
Msp20I TGGCCA 2 cut(s) 89, 119
MspI CCGG 5 cut(s) 11, 47, 205, 322, 1043
MspR9I CCNGG 1 cut(s) 11
MunI CAATTG 1 cut(s) 885
MwoI GCNNNNNNNGC 2 cut(s) 208, 383
NciI CCSGG 1 cut(s) 11
NcoI CCATGG 1 cut(s) 796
NdeII GATC 3 cut(s) 219, 235, 1106
NlaIII CATG 5 cut(s) 82, 526, 760, 800, 944
NlaIV GGNNCC 3 cut(s) 9, 744, 1108
OliI CACNNNNGTG 1 cut(s) 900
PagI TCATGA 1 cut(s) 940
PaqCI CACCTGC 1 cut(s) 896
PciSI GCTCTTC 1 cut(s) 1083
PcsI WCGNNNNNNNCGW 3 cut(s) 342, 870, 971
PdmI GAANNNNTTC 1 cut(s) 961
PfeI GAWTC 1 cut(s) 668
PflMI CCANNNNNTGG 1 cut(s) 627
PinAI ACCGGT 1 cut(s) 321
PkrI GCNGC 2 cut(s) 379, 881
PleI GAGTC 3 cut(s) 104, 722, 728
PpsI GAGTC 3 cut(s) 104, 722, 728
Ppu21I YACGTR 1 cut(s) 337
PpuMI RGGWCCY 1 cut(s) 7
Psp124BI GAGCTC 1 cut(s) 1095
Psp5II RGGWCCY 1 cut(s) 7
PspN4I GGNNCC 3 cut(s) 9, 744, 1108
PspPI GGNCC 5 cut(s) 7, 455, 789, 881, 1033
PspPPI RGGWCCY 1 cut(s) 7
PstI CTGCAG 2 cut(s) 902, 954
PsuI RGATCY 1 cut(s) 1106
RsaI GTAC 3 cut(s) 124, 503, 929
RsaNI GTAC 3 cut(s) 123, 502, 928
RseI CAYNNNNRTG 1 cut(s) 900
SacI GAGCTC 1 cut(s) 1095
SapI GCTCTTC 1 cut(s) 1083
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 2 cut(s) 378, 880
Sau3AI GATC 3 cut(s) 219, 235, 1106
Sau96I GGNCC 5 cut(s) 7, 455, 789, 881, 1033
ScaI AGTACT 1 cut(s) 124
SchI GAGTC 3 cut(s) 104, 722, 728
ScrFI CCNGG 1 cut(s) 11
SduI GDGCHC 2 cut(s) 897, 1095
SfaNI GCATC 4 cut(s) 33, 198, 235, 1057
SfcI CTRYAG 2 cut(s) 898, 950
SinI GGWCC 3 cut(s) 7, 455, 1033
SmiMI CAYNNNNRTG 1 cut(s) 900
SnaBI TACGTA 1 cut(s) 337
SpeI ACTAGT 1 cut(s) 673
SsiI CCGC 4 cut(s) 272, 377, 821, 879
SspMI CTAG 1 cut(s) 674
SstI GAGCTC 1 cut(s) 1095
StyD4I CCNGG 1 cut(s) 9
StyI CCWWGG 2 cut(s) 102, 796
TaaI ACNGT 4 cut(s) 170, 289, 506, 720
TaiI ACGT 4 cut(s) 339, 818, 929, 977
TaqI TCGA 1 cut(s) 345
TatI WGTACW 1 cut(s) 122
TauI GCSGC 2 cut(s) 380, 882
TfiI GAWTC 1 cut(s) 668
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 5 cut(s) 90, 292, 902, 907, 954
TspDTI ATGAA 5 cut(s) 345, 363, 400, 929, 1095
TspRI CASTG 5 cut(s) 90, 292, 902, 907, 954
Van91I CCANNNNNTGG 1 cut(s) 627
VneI GTGCAC 1 cut(s) 893
VpaK11BI GGWCC 3 cut(s) 7, 455, 1033
XagI CCTNNNNNAGG 1 cut(s) 689
XapI RAATTY 5 cut(s) 185, 599, 647, 831, 957
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
XmnI GAANNNNTTC 1 cut(s) 961
XspI CTAG 1 cut(s) 674
ZrmI AGTACT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.