Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001574

Physical Location & Seq

Genomic Coordinates Reverse (-)

10845070 .. 10849431

Gene Structure 4362 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g12360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCATCGAAACCCTTCCCTTCCTTCTCCGCCGATTCTCCGCCGCCGAGGCTCACACTCAGTCCCGATCAGTACAACTACTGCTCCCAGGCCCTCAAATTCCTCAAAGACAAGCTCCAGATGCCTCACCAGATAAACCAAGAGTTCGCTCTCTTACAGGGGAAGCGGATCACAGCGTCGGAGATGAAGAGAAGTTGCACTGTGGCTCTTGACAGTGTCAATGTCAGCAAAAATCGGTACACCGATGTGTTACCATTTGATCAGAATAGGGTAGTTCTCAACTCTTGTAAAGATTACAGACCTGAAGCAAGGGGCTACATCAATGCCAGCTTCATTTCGGCTTGTTCCTCTGGAAACATTTCTAGGTTTATTGCTACACAAGGTCCACTTCCGCACACATATGAGGATTTCTGGGAGATGGTACTTGAGAACCGGTGCCCTGTAGTTGTCATGCTCACTCGCTTGGTCGACTATCACAGGATGGTCAAGTGTGGAGATTATTTTCAGGCAGAAGATGGTCCTAGAGAATTCGGTAACATAACTCTATCCACCAAGTGGATAAGAACCACTGGCAATTCAATAGCATTGCGGCTTCTGGAGGTCAACAGTAAAGAGTCAGAAGAACCACCAATTTCTGTGCTGCATATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCCACAGATACAATTGCTGTTCGTGAAATCTTGAAGACAATATATCAAGTTCCACCTGACCTTGGCCCAGTAGTGGTGCACTGCAGTGCAGGTATTGGGAGGACTGGAACATACTGCACAATTCATAATACGATTCAGAGAATTCTTTCGGGGGACATGTCTGCTTTAGATCTTGCTAATACAATAACCACTTTTAGGACTGAGCGTATTGGAATGGTGCAGACACTGGAGCAATATTTTTTCTGTTACTCTGCAATCATTGATGAATTGGAGGACCTCATGGCGAATCTGAATGGTGAAAGGAGCCTAAAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000188 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006469 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010563 GO:0010605 GO:0010646 GO:0010648 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031347 GO:0031348 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033549 GO:0033550 GO:0033673 GO:0035335 GO:0035556 GO:0036211 GO:0042325 GO:0042326 GO:0042578 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043407 GO:0043408 GO:0043409 GO:0043412 GO:0043549 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045936 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071901 GO:0071944 GO:0080090 GO:0080134 GO:0140096 GO:1901564 GO:1902531 GO:1902532 GO:1990264

KEGG Pathways

Metabolic & Signaling

ko04520 ko04910 ko04931 map04520 map04910 map04931

Pfam Domains

Protein Families

Y_phosphatase

Protein Analysis

332

Amino Acids

37.44

Weight (kDa)

6.19

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Y_phosphatase	PF00102	74 - 313	6.7e-70	Protein-tyrosine phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71860 AT1G71860 AT1G71860
fragaria_vesca	FvH4_2g12360 FvH4_2g12360 FvH4_2g12360 FvH4_2g12360 FvH4_5g14850 FvH4_5g14850 FvH4_5g14850
malus_domestica	MD05G1039700.v1.1 MD09G1287400.v1.1 MD10G1045300.v1.1
prunus_persica	Prupe.1G402600_v2.0.a1 Prupe.8G052200_v2.0.a1 Prupe.8G052200_v2.0.a1
pyrus_communis	pycom05g03240 pycom10g03170
rosa_chinensis	RchiOBHm_Chr3g0456471 RchiOBHm_Chr6g0272381 RchiOBHm_Chr7g0181531
rosa_laevigata	RLG00000005185 RLG00000013677 RLG00000025303
rosa_multiflora	Rmu_co8205282.1_g000001 Rmu_sc0004621.1_g000033 Rmu_sc0010043.1_g000002 Rmu_sc0023867.1_g000001 Rmu_sc0029422.1_g000002
rosa_roxburghii	Rroxscaffold_3G00271920 Rroxscaffold_6G00422730 Rroxscaffold_7G00196330
rosa_rugosa	Rorug03G0013200 Rorug03G0013300 Rorug06G0068700 Rorug06G0442100
rosa_samantha	Rh3AG073600 Rh3BG075500 Rh3CG075000 Rh3DG076800 Rh6AG184800 Rh6BG188100 Rh6DG177800 Rh7AG044200 Rh7BG043300 Rh7CG045100 Rh7DG043800
rosa_wichuraiana	Rw3G006310 Rw6G015980 Rw7G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	758
AccB1I	GGYRCC	1 cut(s)	435
AccB7I	CCANNNNNTGG	1 cut(s)	555
AccI	GTMKAC	1 cut(s)	468
AciI	CCGC	6 cut(s)	30, 41, 44, 166, 392, 589
AclWI	GGATC	1 cut(s)	176
AcsI	RAATTY	3 cut(s)	98, 527, 819
AcuI	CTGAAG	1 cut(s)	324
AdeI	CACNNNGTG	1 cut(s)	555
AfaI	GTAC	3 cut(s)	74, 239, 423
AfiI	CCNNNNNNNGG	5 cut(s)	555, 671, 740, 751, 873
AflIII	ACRYGT	1 cut(s)	834
AgeI	ACCGGT	1 cut(s)	432
AgsI	TTSAA	2 cut(s)	579, 712
AjnI	CCWGG	1 cut(s)	87
AleI	CACNNNNGTG	2 cut(s)	245, 762
AluBI	AGCT	2 cut(s)	115, 330
AluI	AGCT	2 cut(s)	115, 330
Alw21I	GWGCWC	1 cut(s)	759
Alw44I	GTGCAC	1 cut(s)	755
AlwI	GGATC	1 cut(s)	176
AlwNI	CAGNNNCTG	1 cut(s)	904
AoxI	GGCC	3 cut(s)	90, 662, 742
ApaLI	GTGCAC	1 cut(s)	755
ApeKI	GCWGC	1 cut(s)	640
ApoI	RAATTY	3 cut(s)	98, 527, 819
AsiGI	ACCGGT	1 cut(s)	432
Asp700I	GAANNNNTTC	3 cut(s)	14, 358, 823
AspS9I	GGNCC	5 cut(s)	91, 383, 518, 743, 952
AsuHPI	GGTGA	2 cut(s)	119, 986
AvaII	GGWCC	3 cut(s)	383, 518, 952
BaeGI	GKGCMC	2 cut(s)	440, 759
BanI	GGYRCC	1 cut(s)	435
BbsI	GAAGAC	1 cut(s)	719
Bbv12I	GWGCWC	1 cut(s)	759
BbvI	GCAGC	1 cut(s)	627
BccI	CCATC	3 cut(s)	412, 475, 509
BciT130I	CCWGG	1 cut(s)	89
BciVI	GTATCC	1 cut(s)	663
BclI	TGATCA	1 cut(s)	259
BfaI	CTAG	2 cut(s)	363, 522
BfmI	CTRYAG	2 cut(s)	441, 760
BfuAI	ACCTGC	1 cut(s)	758
BfuI	GTATCC	1 cut(s)	663
BglI	GCCNNNNNGGC	1 cut(s)	49
BglII	AGATCT	1 cut(s)	847
BisI	GCNGC	3 cut(s)	44, 590, 641
BlsI	GCNGC	3 cut(s)	45, 591, 642
Bme1390I	CCNGG	1 cut(s)	89
Bme18I	GGWCC	3 cut(s)	383, 518, 952
BmgT120I	GGNCC	5 cut(s)	91, 383, 518, 743, 952
BmiI	GGNNCC	2 cut(s)	437, 983
BmrFI	CCNGG	1 cut(s)	89
BmrI	ACTGGG	1 cut(s)	740
BmsI	GCATC	2 cut(s)	14, 111
BmuI	ACTGGG	1 cut(s)	740
BpiI	GAAGAC	1 cut(s)	719
BpmI	CTGGAG	3 cut(s)	101, 617, 926
BpuEI	CTTGAG	1 cut(s)	446
BsaJI	CCNNGG	4 cut(s)	47, 87, 670, 739
BsaWI	WCCGGW	1 cut(s)	432
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	5 cut(s)	555, 671, 740, 751, 873
Bse118I	RCCGGY	1 cut(s)	432
Bse1I	ACTGG	4 cut(s)	574, 746, 787, 909
Bse3DI	GCAATG	1 cut(s)	584
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	4 cut(s)	47, 87, 670, 739
BseGI	GGATG	1 cut(s)	486
BseLI	CCNNNNNNNGG	5 cut(s)	555, 671, 740, 751, 873
BseMI	GCAATG	1 cut(s)	584
BseMII	CTCAG	2 cut(s)	73, 870
BseNI	ACTGG	4 cut(s)	574, 746, 787, 909
BseSI	GKGCMC	2 cut(s)	440, 759
BseXI	GCAGC	1 cut(s)	627
BsgI	GTGCAG	3 cut(s)	778, 786, 917
BshFI	GGCC	3 cut(s)	92, 664, 744
BshNI	GGYRCC	1 cut(s)	435
BshTI	ACCGGT	1 cut(s)	432
BsiHKAI	GWGCWC	1 cut(s)	759
BsiSI	CCGG	1 cut(s)	433
BslFI	GGGAC	2 cut(s)	48, 845
BslI	CCNNNNNNNGG	5 cut(s)	555, 671, 740, 751, 873
BsmFI	GGGAC	2 cut(s)	48, 845
BsnI	GGCC	3 cut(s)	92, 664, 744
Bsp1286I	GDGCHC	2 cut(s)	440, 759
Bsp143I	GATC	4 cut(s)	67, 168, 259, 847
Bsp19I	CCATGG	1 cut(s)	670
BspACI	CCGC	6 cut(s)	30, 41, 44, 166, 392, 589
BspANI	GGCC	3 cut(s)	92, 664, 744
BspCNI	CTCAG	2 cut(s)	72, 871
BspLI	GGNNCC	2 cut(s)	437, 983
BspMAI	CTGCAG	1 cut(s)	764
BspMI	ACCTGC	1 cut(s)	758
BspPI	GGATC	1 cut(s)	176
BspT107I	GGYRCC	1 cut(s)	435
BsrDI	GCAATG	1 cut(s)	584
BsrFI	RCCGGY	1 cut(s)	432
BsrI	ACTGG	4 cut(s)	574, 746, 787, 909
BssAI	RCCGGY	1 cut(s)	432
BssECI	CCNNGG	4 cut(s)	47, 87, 670, 739
BssMI	GATC	4 cut(s)	67, 168, 259, 847
BssT1I	CCWWGG	2 cut(s)	670, 739
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	3 cut(s)	202, 215, 608
Bst6I	CTCTTC	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	2 cut(s)	59, 879
BstDSI	CCRYGG	1 cut(s)	670
BstF5I	GGATG	1 cut(s)	486
BstKTI	GATC	4 cut(s)	70, 171, 262, 850
BstMBI	GATC	4 cut(s)	67, 168, 259, 847
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 121
BstNI	CCWGG	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	838
BstSCI	CCNGG	1 cut(s)	87
BstSFI	CTRYAG	2 cut(s)	441, 760
BstSLI	GKGCMC	2 cut(s)	440, 759
BstV1I	GCAGC	1 cut(s)	627
BstV2I	GAAGAC	1 cut(s)	719
BstX2I	RGATCY	1 cut(s)	847
BstYI	RGATCY	1 cut(s)	847
BsuI	GTATCC	1 cut(s)	663
BsuRI	GGCC	3 cut(s)	92, 664, 744
BtgI	CCRYGG	1 cut(s)	670
BtsCI	GGATG	1 cut(s)	486
BtsI	GCAGTG	2 cut(s)	757, 769
BtsIMutI	CAGTG	6 cut(s)	198, 220, 567, 757, 769, 902
BveI	ACCTGC	1 cut(s)	758
Cac8I	GCNNGC	1 cut(s)	328
CaiI	CAGNNNCTG	1 cut(s)	904
Cfr10I	RCCGGY	1 cut(s)	432
Cfr13I	GGNCC	5 cut(s)	91, 383, 518, 743, 952
CseI	GACGC	1 cut(s)	165
Csp6I	GTAC	3 cut(s)	73, 238, 422
CspAI	ACCGGT	1 cut(s)	432
CviAII	CATG	4 cut(s)	451, 671, 835, 958
CviQI	GTAC	3 cut(s)	73, 238, 422
DdeI	CTNAG	2 cut(s)	59, 879
DpnI	GATC	4 cut(s)	69, 170, 261, 849
DpnII	GATC	4 cut(s)	67, 168, 259, 847
DraIII	CACNNNGTG	1 cut(s)	555
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
EciI	GGCGGA	2 cut(s)	19, 30
Eco130I	CCWWGG	2 cut(s)	670, 739
Eco47I	GGWCC	3 cut(s)	383, 518, 952
Eco57I	CTGAAG	1 cut(s)	324
EcoO109I	RGGNCCY	2 cut(s)	91, 952
EcoRI	GAATTC	2 cut(s)	527, 819
EcoRII	CCWGG	1 cut(s)	87
EcoT14I	CCWWGG	2 cut(s)	670, 739
ErhI	CCWWGG	2 cut(s)	670, 739
FaeI	CATG	4 cut(s)	454, 674, 838, 961
FalI	AAGNNNNNCTT	2 cut(s)	372, 404
FaqI	GGGAC	2 cut(s)	48, 845
FatI	CATG	4 cut(s)	450, 670, 834, 957
FauNDI	CATATG	1 cut(s)	400
FbaI	TGATCA	1 cut(s)	259
FblI	GTMKAC	1 cut(s)	468
Fnu4HI	GCNGC	3 cut(s)	44, 590, 641
FokI	GGATG	1 cut(s)	493
Fsp4HI	GCNGC	3 cut(s)	44, 590, 641
FspBI	CTAG	2 cut(s)	363, 522
GluI	GCNGC	3 cut(s)	44, 590, 641
GsuI	CTGGAG	3 cut(s)	101, 617, 926
HaeIII	GGCC	3 cut(s)	92, 664, 744
HapII	CCGG	1 cut(s)	433
HgaI	GACGC	1 cut(s)	165
Hin1II	CATG	4 cut(s)	454, 674, 838, 961
HincII	GTYRAC	2 cut(s)	469, 604
HindII	GTYRAC	2 cut(s)	469, 604
HinfI	GANTC	4 cut(s)	35, 614, 811, 964
HpaII	CCGG	1 cut(s)	433
HphI	GGTGA	2 cut(s)	119, 986
Hpy166II	GTNNAC	5 cut(s)	240, 386, 469, 604, 757
Hpy188I	TCNGA	5 cut(s)	181, 264, 619, 816, 969
Hpy188III	TCNNGA	8 cut(s)	65, 118, 209, 351, 596, 656, 701, 709
Hpy8I	GTNNAC	5 cut(s)	240, 386, 469, 604, 757
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	3 cut(s)	25, 30, 34
HpyCH4III	ACNGT	3 cut(s)	202, 215, 608
HpyCH4V	TGCA	8 cut(s)	198, 643, 757, 762, 767, 795, 898, 932
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 121
HpyF3I	CTNAG	2 cut(s)	59, 879
Hsp92II	CATG	4 cut(s)	454, 674, 838, 961
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	4 cut(s)	67, 168, 259, 847
LmnI	GCTCC	4 cut(s)	89, 120, 907, 981
Lsp1109I	GCAGC	1 cut(s)	627
LweI	GCATC	2 cut(s)	14, 111
MaeI	CTAG	2 cut(s)	363, 522
MaeIII	GTNAC	3 cut(s)	249, 533, 923
MalI	GATC	4 cut(s)	69, 170, 261, 849
MboI	GATC	4 cut(s)	67, 168, 259, 847
MboII	GAAGA	4 cut(s)	199, 524, 632, 724
MfeI	CAATTG	1 cut(s)	690
MflI	RGATCY	1 cut(s)	847
MhlI	GDGCHC	2 cut(s)	440, 759
MluCI	AATT	8 cut(s)	98, 527, 574, 630, 690, 798, 819, 944
MlyI	GAGTC	1 cut(s)	623
MmeI	TCCRAC	1 cut(s)	159
MroXI	GAANNNNTTC	3 cut(s)	14, 358, 823
MslI	CAYNNNNRTG	3 cut(s)	245, 399, 762
MspI	CCGG	1 cut(s)	433
MspR9I	CCNGG	1 cut(s)	89
MunI	CAATTG	1 cut(s)	690
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	2 cut(s)	49, 121
NcoI	CCATGG	1 cut(s)	670
NdeI	CATATG	1 cut(s)	400
NdeII	GATC	4 cut(s)	67, 168, 259, 847
NlaIII	CATG	4 cut(s)	454, 674, 838, 961
NlaIV	GGNNCC	2 cut(s)	437, 983
NmeAIII	GCCGAG	1 cut(s)	72
NspI	RCATGY	1 cut(s)	838
OliI	CACNNNNGTG	2 cut(s)	245, 762
PciI	ACATGT	1 cut(s)	834
PdmI	GAANNNNTTC	3 cut(s)	14, 358, 823
PfeI	GAWTC	3 cut(s)	35, 811, 964
PflFI	GACNNNGTC	1 cut(s)	215
PflMI	CCANNNNNTGG	1 cut(s)	555
PinAI	ACCGGT	1 cut(s)	432
PkrI	GCNGC	3 cut(s)	45, 591, 642
PleI	GAGTC	1 cut(s)	622
PpsI	GAGTC	1 cut(s)	622
PpuMI	RGGWCCY	1 cut(s)	952
PscI	ACATGT	1 cut(s)	834
Psp5II	RGGWCCY	1 cut(s)	952
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	2 cut(s)	437, 983
PspPI	GGNCC	5 cut(s)	91, 383, 518, 743, 952
PspPPI	RGGWCCY	1 cut(s)	952
PstI	CTGCAG	1 cut(s)	764
PstNI	CAGNNNCTG	1 cut(s)	904
PsuI	RGATCY	1 cut(s)	847
PsyI	GACNNNGTC	1 cut(s)	215
RsaI	GTAC	3 cut(s)	74, 239, 423
RsaNI	GTAC	3 cut(s)	73, 238, 422
RseI	CAYNNNNRTG	3 cut(s)	245, 399, 762
SalI	GTCGAC	1 cut(s)	467
SatI	GCNGC	3 cut(s)	44, 590, 641
Sau3AI	GATC	4 cut(s)	67, 168, 259, 847
Sau96I	GGNCC	5 cut(s)	91, 383, 518, 743, 952
SchI	GAGTC	1 cut(s)	623
ScrFI	CCNGG	1 cut(s)	89
SduI	GDGCHC	2 cut(s)	440, 759
SfaNI	GCATC	2 cut(s)	14, 111
SfcI	CTRYAG	2 cut(s)	441, 760
SinI	GGWCC	3 cut(s)	383, 518, 952
SmiMI	CAYNNNNRTG	3 cut(s)	245, 399, 762
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
Sse9I	AATT	8 cut(s)	98, 527, 574, 630, 690, 798, 819, 944
SsiI	CCGC	6 cut(s)	30, 41, 44, 166, 392, 589
SspI	AATATT	1 cut(s)	914
SspMI	CTAG	2 cut(s)	363, 522
StyD4I	CCNGG	1 cut(s)	87
StyI	CCWWGG	2 cut(s)	670, 739
TaaI	ACNGT	3 cut(s)	202, 215, 608
TaqI	TCGA	2 cut(s)	8, 468
TasI	AATT	8 cut(s)	98, 527, 574, 630, 690, 798, 819, 944
TatI	WGTACW	1 cut(s)	72
TauI	GCSGC	2 cut(s)	46, 592
TfiI	GAWTC	3 cut(s)	35, 811, 964
TscAI	CASTG	6 cut(s)	205, 220, 574, 764, 769, 909
TseI	GCWGC	1 cut(s)	640
TspDTI	ATGAA	4 cut(s)	200, 322, 791, 957
TspRI	CASTG	6 cut(s)	205, 220, 574, 764, 769, 909
Tth111I	GACNNNGTC	1 cut(s)	215
Van91I	CCANNNNNTGG	1 cut(s)	555
VneI	GTGCAC	1 cut(s)	755
VpaK11BI	GGWCC	3 cut(s)	383, 518, 952
XapI	RAATTY	3 cut(s)	98, 527, 819
XceI	RCATGY	1 cut(s)	838
XmiI	GTMKAC	1 cut(s)	468
XmnI	GAANNNNTTC	3 cut(s)	14, 358, 823
XspI	CTAG	2 cut(s)	363, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.