Rmu_sc0010043.1_g000002

Protein-tyrosine-phosphatase PTP1-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010043.1
Physical Location & Seq
Forward (+)
9000 .. 10625
1626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010043.1_g000002.1.cds

Sequence Viewer

Length: 954 bp
atgtgcgcgtttggctccgatctctggagacgtcgaccattgaaggctcgccggattgctggcactgcttcaagaactcatccacttatcccaacgatgcatcgttcttcgccattgacactctcgaggtctataagtggacgacgctctcgggaacgaccgctccattttcaacattttccaagctcgaaattgatttcaaatccaaatcatgtcctgctccggatgcgaagccacggtagagaaacagagctccggcttcttcaactcgacttcttctcctccacgcccttggctttctacagcacggcctcttcatcgctgtcctcatcccaccggagaccgagggcgacggcgacggcgatggcctcttctgccgcagaaaaacctctcccttcctttgagttctcggccgattctccgccggcgagactcagactcagccccgatcagtataactactgctcccaggctctcaaattcttcaaagacaaactccagatgcgtcaccagatcaaccaagagttcgctctcttacagggcaagaggatcacagcatctgagatgaagagaagttgcactgtggctctggaccctgtcaatgtcaccaaaaatcgctacaccgatgtcttaccatttgatcaaaatagggttgtcctcaagtcttgtaaagattacagacctgaagcaaggggctacatcaatggcagctacatctcggcttgttcctctgaaagcatttctaggtttatagctacacaaggtccacttccgcatacctatgaggatttctgggagatggtacttgagaaccattgccctgtagtggtcatgcttactcgcttagtcgactattacaaggtacttctctggttgtgtttttgtgatctgaatcatttacagaacatcggccctaatatacgaaatagtgattcaatcgtctttgacatatga

Protein Analysis

317

Amino Acids

36.26

Weight (kDa)

9.83

Isoelectric Point (pI)

66.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 34
AccBSI CCGCTC 1 cut(s) 163
AccI GTMKAC 2 cut(s) 34, 849
AccII CGCG 1 cut(s) 8
AccIII TCCGGA 1 cut(s) 222
AciI CCGC 4 cut(s) 161, 378, 422, 773
AclWI GGATC 1 cut(s) 557
AcoI YGGCCR 1 cut(s) 411
AcsI RAATTY 1 cut(s) 479
AcuI CTGAAG 1 cut(s) 705
AcyI GRCGYC 1 cut(s) 31
AfaI GTAC 2 cut(s) 804, 864
AfiI CCNNNNNNNGG 2 cut(s) 24, 826
AgsI TTSAA 7 cut(s) 43, 72, 173, 201, 266, 487, 936
AjnI CCWGG 1 cut(s) 468
AloI GAACNNNNNNTCC 2 cut(s) 147, 179
AluBI AGCT 4 cut(s) 186, 253, 711, 755
AluI AGCT 4 cut(s) 186, 253, 711, 755
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 3 cut(s) 22, 334, 424
AlwI GGATC 1 cut(s) 557
AlwNI CAGNNNCTG 1 cut(s) 560
Ama87I CYCGRG 2 cut(s) 124, 150
Aor13HI TCCGGA 1 cut(s) 222
AoxI GGCC 4 cut(s) 309, 366, 411, 910
ApeKI GCWGC 1 cut(s) 708
ApoI RAATTY 1 cut(s) 479
AspLEI GCGC 1 cut(s) 8
AspS9I GGNCC 3 cut(s) 592, 764, 911
AsuHPI GGTGA 2 cut(s) 500, 598
AvaI CYCGRG 2 cut(s) 124, 150
AvaII GGWCC 2 cut(s) 592, 764
BanII GRGCYC 1 cut(s) 255
Bbv12I GWGCWC 1 cut(s) 255
BbvI GCAGC 1 cut(s) 720
BccI CCATC 2 cut(s) 358, 793
BceAI ACGGC 3 cut(s) 324, 369, 375
BciT130I CCWGG 1 cut(s) 470
BclI TGATCA 1 cut(s) 640
BcoDI GTCTC 3 cut(s) 22, 334, 424
BfaI CTAG 1 cut(s) 744
BfmI CTRYAG 2 cut(s) 301, 822
BisI GCNGC 2 cut(s) 378, 709
BlsI GCNGC 2 cut(s) 379, 710
Bme1390I CCNGG 1 cut(s) 470
Bme18I GGWCC 2 cut(s) 592, 764
BmeT110I CYCGRG 2 cut(s) 124, 150
BmgT120I GGNCC 3 cut(s) 592, 764, 911
BmiI GGNNCC 2 cut(s) 16, 594
BmrFI CCNGG 1 cut(s) 470
BmsI GCATC 5 cut(s) 87, 109, 216, 492, 566
BpmI CTGGAG 2 cut(s) 46, 482
BpuEI CTTGAG 2 cut(s) 644, 827
BsaBI GATNNNNATC 1 cut(s) 891
BsaHI GRCGYC 1 cut(s) 31
BsaI GGTCTC 1 cut(s) 334
BsaJI CCNNGG 4 cut(s) 235, 291, 344, 468
BsaWI WCCGGW 2 cut(s) 222, 336
BsaXI ACNNNNNCTCC 6 cut(s) 147, 177, 263, 293, 449, 479
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 826
Bse118I RCCGGY 1 cut(s) 424
Bse3DI GCAATG 1 cut(s) 814
Bse8I GATNNNNATC 1 cut(s) 891
BseAI TCCGGA 1 cut(s) 222
BseBI CCWGG 1 cut(s) 470
BseDI CCNNGG 4 cut(s) 235, 291, 344, 468
BseGI GGATG 3 cut(s) 79, 231, 329
BseJI GATNNNNATC 1 cut(s) 891
BseLI CCNNNNNNNGG 2 cut(s) 24, 826
BseMI GCAATG 1 cut(s) 814
BseMII CTCAG 3 cut(s) 448, 454, 552
BseRI GAGGAG 1 cut(s) 271
BseX3I CGGCCG 1 cut(s) 411
BseXI GCAGC 1 cut(s) 720
Bsh1236I CGCG 1 cut(s) 8
Bsh1285I CGRYCG 2 cut(s) 161, 414
BshFI GGCC 4 cut(s) 311, 368, 413, 912
BsiEI CGRYCG 2 cut(s) 161, 414
BsiHKAI GWGCWC 1 cut(s) 255
BsiHKCI CYCGRG 2 cut(s) 124, 150
BsiSI CCGG 5 cut(s) 52, 223, 256, 337, 425
BslI CCNNNNNNNGG 2 cut(s) 24, 826
BsmAI GTCTC 3 cut(s) 22, 334, 424
BsmBI CGTCTC 1 cut(s) 22
BsnI GGCC 4 cut(s) 311, 368, 413, 912
Bso31I GGTCTC 1 cut(s) 334
BsoBI CYCGRG 2 cut(s) 124, 150
Bsp1286I GDGCHC 1 cut(s) 255
Bsp13I TCCGGA 1 cut(s) 222
Bsp143I GATC 6 cut(s) 19, 448, 513, 549, 640, 886
BspACI CCGC 4 cut(s) 161, 378, 422, 773
BspANI GGCC 4 cut(s) 311, 368, 413, 912
BspCNI CTCAG 3 cut(s) 447, 453, 553
BspEI TCCGGA 1 cut(s) 222
BspFNI CGCG 1 cut(s) 8
BspLI GGNNCC 2 cut(s) 16, 594
BspPI GGATC 1 cut(s) 557
BspTNI GGTCTC 1 cut(s) 334
BsrBI CCGCTC 1 cut(s) 163
BsrDI GCAATG 1 cut(s) 814
BsrFI RCCGGY 1 cut(s) 424
BssAI RCCGGY 1 cut(s) 424
BssECI CCNNGG 4 cut(s) 235, 291, 344, 468
BssMI GATC 6 cut(s) 19, 448, 513, 549, 640, 886
BssNI GRCGYC 1 cut(s) 31
BssT1I CCWWGG 1 cut(s) 291
Bst2UI CCWGG 1 cut(s) 470
Bst4CI ACNGT 2 cut(s) 239, 583
Bst6I CTCTTC 3 cut(s) 319, 376, 563
BstACI GRCGYC 1 cut(s) 31
BstC8I GCNNGC 3 cut(s) 49, 61, 426
BstDEI CTNAG 4 cut(s) 434, 440, 561, 844
BstDSI CCRYGG 1 cut(s) 235
BstF5I GGATG 3 cut(s) 79, 231, 329
BstFNI CGCG 1 cut(s) 8
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 6 cut(s) 22, 451, 516, 552, 643, 889
BstMAI GTCTC 3 cut(s) 22, 334, 424
BstMBI GATC 6 cut(s) 19, 448, 513, 549, 640, 886
BstMCI CGRYCG 2 cut(s) 161, 414
BstMWI GCNNNNNNNGC 4 cut(s) 12, 65, 226, 374
BstNI CCWGG 1 cut(s) 470
BstSCI CCNGG 1 cut(s) 468
BstSFI CTRYAG 2 cut(s) 301, 822
BstUI CGCG 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 720
BstXI CCANNNNNNTGG 1 cut(s) 292
BstZI CGGCCG 1 cut(s) 411
BsuRI GGCC 4 cut(s) 311, 368, 413, 912
BtgI CCRYGG 1 cut(s) 235
BtgZI GCGATG 2 cut(s) 303, 377
BtsCI GGATG 3 cut(s) 79, 231, 329
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 2 cut(s) 63, 579
Cac8I GCNNGC 3 cut(s) 49, 61, 426
CaiI CAGNNNCTG 1 cut(s) 560
CfoI GCGC 1 cut(s) 8
Cfr10I RCCGGY 1 cut(s) 424
Cfr13I GGNCC 3 cut(s) 592, 764, 911
CseI GACGC 2 cut(s) 153, 494
Csp6I GTAC 2 cut(s) 803, 863
CviAII CATG 2 cut(s) 212, 832
CviQI GTAC 2 cut(s) 803, 863
DdeI CTNAG 4 cut(s) 434, 440, 561, 844
DpnI GATC 6 cut(s) 21, 450, 515, 551, 642, 888
DpnII GATC 6 cut(s) 19, 448, 513, 549, 640, 886
EaeI YGGCCR 1 cut(s) 411
EagI CGGCCG 1 cut(s) 411
Eam1104I CTCTTC 3 cut(s) 319, 376, 563
EarI CTCTTC 3 cut(s) 319, 376, 563
EciI GGCGGA 1 cut(s) 411
Ecl136II GAGCTC 1 cut(s) 253
EclXI CGGCCG 1 cut(s) 411
Eco130I CCWWGG 1 cut(s) 291
Eco24I GRGCYC 1 cut(s) 255
Eco31I GGTCTC 1 cut(s) 334
Eco47I GGWCC 2 cut(s) 592, 764
Eco52I CGGCCG 1 cut(s) 411
Eco53kI GAGCTC 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 705
Eco88I CYCGRG 2 cut(s) 124, 150
EcoICRI GAGCTC 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 468
EcoT14I CCWWGG 1 cut(s) 291
EcoT22I ATGCAT 1 cut(s) 102
EcoT38I GRGCYC 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 291
Esp3I CGTCTC 1 cut(s) 22
FaeI CATG 2 cut(s) 215, 835
FalI AAGNNNNNCTT 2 cut(s) 753, 785
FatI CATG 2 cut(s) 211, 831
FauNDI CATATG 1 cut(s) 950
FbaI TGATCA 1 cut(s) 640
FblI GTMKAC 2 cut(s) 34, 849
Fnu4HI GCNGC 2 cut(s) 378, 709
FokI GGATG 3 cut(s) 66, 238, 316
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 2 cut(s) 378, 709
FspBI CTAG 1 cut(s) 744
GlaI GCGC 1 cut(s) 7
GluI GCNGC 2 cut(s) 378, 709
GsuI CTGGAG 2 cut(s) 46, 482
HaeIII GGCC 4 cut(s) 311, 368, 413, 912
HapII CCGG 5 cut(s) 52, 223, 256, 337, 425
HgaI GACGC 2 cut(s) 153, 494
HhaI GCGC 1 cut(s) 8
Hin1I GRCGYC 1 cut(s) 31
Hin1II CATG 2 cut(s) 215, 835
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HincII GTYRAC 2 cut(s) 35, 850
HindII GTYRAC 2 cut(s) 35, 850
HinfI GANTC 5 cut(s) 416, 432, 438, 892, 932
HpaII CCGG 5 cut(s) 52, 223, 256, 337, 425
HphI GGTGA 2 cut(s) 500, 598
Hpy166II GTNNAC 4 cut(s) 35, 140, 767, 850
Hpy188I TCNGA 5 cut(s) 19, 437, 562, 733, 891
Hpy188III TCNNGA 7 cut(s) 25, 72, 124, 152, 223, 499, 590
Hpy8I GTNNAC 4 cut(s) 35, 140, 767, 850
Hpy99I CGWCG 4 cut(s) 36, 147, 355, 361
HpyAV CCTTC 2 cut(s) 37, 405
HpyCH4III ACNGT 2 cut(s) 239, 583
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 2 cut(s) 100, 579
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 65, 226, 374
HpyF3I CTNAG 4 cut(s) 434, 440, 561, 844
HpySE526I ACGT 1 cut(s) 31
Hsp92I GRCGYC 1 cut(s) 31
Hsp92II CATG 2 cut(s) 215, 835
HspAI GCGC 1 cut(s) 6
Kpn2I TCCGGA 1 cut(s) 222
KroI GCCGGC 1 cut(s) 424
KroNI GCCGGC 1 cut(s) 426
Ksp22I TGATCA 1 cut(s) 640
Kzo9I GATC 6 cut(s) 19, 448, 513, 549, 640, 886
LmnI GCTCC 5 cut(s) 20, 168, 225, 258, 470
Lsp1109I GCAGC 1 cut(s) 720
LweI GCATC 5 cut(s) 87, 109, 216, 492, 566
MaeI CTAG 1 cut(s) 744
MaeII ACGT 1 cut(s) 31
MaeIII GTNAC 2 cut(s) 506, 604
MalI GATC 6 cut(s) 21, 450, 515, 551, 642, 888
MbiI CCGCTC 1 cut(s) 163
MboI GATC 6 cut(s) 19, 448, 513, 549, 640, 886
MboII GAAGA 7 cut(s) 99, 254, 268, 306, 363, 475, 580
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 2 cut(s) 191, 479
MlyI GAGTC 2 cut(s) 426, 432
Mph1103I ATGCAT 1 cut(s) 102
MreI CGCCGGCG 1 cut(s) 424
MroI TCCGGA 1 cut(s) 222
MroNI GCCGGC 1 cut(s) 424
MslI CAYNNNNRTG 1 cut(s) 780
MspI CCGG 5 cut(s) 52, 223, 256, 337, 425
MspR9I CCNGG 1 cut(s) 470
MvaI CCWGG 1 cut(s) 470
MvnI CGCG 1 cut(s) 8
MwoI GCNNNNNNNGC 4 cut(s) 12, 65, 226, 374
NaeI GCCGGC 1 cut(s) 426
NdeI CATATG 1 cut(s) 950
NdeII GATC 6 cut(s) 19, 448, 513, 549, 640, 886
NgoMIV GCCGGC 1 cut(s) 424
NlaIII CATG 2 cut(s) 215, 835
NlaIV GGNNCC 2 cut(s) 16, 594
NmeAIII GCCGAG 2 cut(s) 389, 698
NmuCI GTSAC 2 cut(s) 506, 604
NsiI ATGCAT 1 cut(s) 102
PaeR7I CTCGAG 1 cut(s) 124
PcsI WCGNNNNNNNCGW 1 cut(s) 359
PdiI GCCGGC 1 cut(s) 426
PfeI GAWTC 3 cut(s) 416, 892, 932
PflFI GACNNNGTC 1 cut(s) 596
PkrI GCNGC 2 cut(s) 379, 710
PleI GAGTC 2 cut(s) 426, 432
PpsI GAGTC 2 cut(s) 426, 432
Psp124BI GAGCTC 1 cut(s) 255
Psp6I CCWGG 1 cut(s) 468
PspGI CCWGG 1 cut(s) 468
PspN4I GGNNCC 2 cut(s) 16, 594
PspPI GGNCC 3 cut(s) 592, 764, 911
PstNI CAGNNNCTG 1 cut(s) 560
PsyI GACNNNGTC 1 cut(s) 596
RsaI GTAC 2 cut(s) 804, 864
RsaNI GTAC 2 cut(s) 803, 863
RseI CAYNNNNRTG 1 cut(s) 780
SacI GAGCTC 1 cut(s) 255
SalI GTCGAC 2 cut(s) 33, 848
SatI GCNGC 2 cut(s) 378, 709
Sau3AI GATC 6 cut(s) 19, 448, 513, 549, 640, 886
Sau96I GGNCC 3 cut(s) 592, 764, 911
SchI GAGTC 2 cut(s) 426, 432
ScrFI CCNGG 1 cut(s) 470
SduI GDGCHC 1 cut(s) 255
SfaNI GCATC 5 cut(s) 87, 109, 216, 492, 566
SfcI CTRYAG 2 cut(s) 301, 822
Sfr274I CTCGAG 1 cut(s) 124
SgrAI CRCCGGYG 1 cut(s) 424
SinI GGWCC 2 cut(s) 592, 764
SlaI CTCGAG 1 cut(s) 124
SmiMI CAYNNNNRTG 1 cut(s) 780
SmlI CTYRAG 3 cut(s) 124, 659, 806
SmoI CTYRAG 3 cut(s) 124, 659, 806
Sse9I AATT 2 cut(s) 191, 479
SsiI CCGC 4 cut(s) 161, 378, 422, 773
SspMI CTAG 1 cut(s) 744
SstI GAGCTC 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 468
StyI CCWWGG 1 cut(s) 291
TaaI ACNGT 2 cut(s) 239, 583
TaiI ACGT 1 cut(s) 34
TaqI TCGA 5 cut(s) 34, 125, 188, 270, 849
TaqII GACCGA 1 cut(s) 358
TasI AATT 2 cut(s) 191, 479
TauI GCSGC 1 cut(s) 380
TfiI GAWTC 3 cut(s) 416, 892, 932
TscAI CASTG 2 cut(s) 70, 586
TseFI GTSAC 2 cut(s) 506, 604
TseI GCWGC 1 cut(s) 708
Tsp45I GTSAC 2 cut(s) 506, 604
TspDTI ATGAA 2 cut(s) 306, 581
TspRI CASTG 2 cut(s) 70, 586
Tth111I GACNNNGTC 1 cut(s) 596
VpaK11BI GGWCC 2 cut(s) 592, 764
XapI RAATTY 1 cut(s) 479
XhoI CTCGAG 1 cut(s) 124
XmiI GTMKAC 2 cut(s) 34, 849
XspI CTAG 1 cut(s) 744
ZraI GACGTC 1 cut(s) 32
Zsp2I ATGCAT 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.