Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023867.1

Orthogroup ID

OG0001574

Physical Location & Seq

Genomic Coordinates Forward (+)

466 .. 3482

Gene Structure 3017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023867.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atgtctgtgctccatattcagtatcctgaatggcctgaccatggagttcccacggatacaattgctgttcgtgaaatattgaagtcaatatatcaagttccacccaaccttggcccagtagtggtgcactgcagtgcaggtattgggaggactggaacatactgcacaattcataatacaattcagagaattctttctggggacatgtctgctttagatcttgctaatacgataaccacgtttaggactgagcgtattggaatggtgcagacactggagcaatattttttctgttattctgcaatcattgatgaattggaagacctcatggcggatctgaatggtgaaaggagctcaaaagaggtcaataacaacaacgtcgccgccgccgcccactcatctccaccgtcaattgactcgattcttggcctcttagagacgcaaacagatggaaccggaaaatggcaacaaccgaaccgattgaactcagttctgttctacagcggttctgggaattttcacctcaaacccgaaccgatttcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000188 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006469 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010563 GO:0010605 GO:0010646 GO:0010648 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031347 GO:0031348 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033549 GO:0033550 GO:0033673 GO:0035335 GO:0035556 GO:0036211 GO:0042325 GO:0042326 GO:0042578 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043407 GO:0043408 GO:0043409 GO:0043412 GO:0043549 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045936 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071901 GO:0071944 GO:0080090 GO:0080134 GO:0140096 GO:1901564 GO:1902531 GO:1902532 GO:1990264

KEGG Pathways

Metabolic & Signaling

ko04520 ko04910 ko04931 map04520 map04910 map04931

Pfam Domains

Protein Families

Y_phosphatase

Protein Analysis

181

Amino Acids

19.9

Weight (kDa)

5.08

Isoelectric Point (pI)

38.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71860 AT1G71860 AT1G71860
fragaria_vesca	FvH4_2g12360 FvH4_2g12360 FvH4_2g12360 FvH4_2g12360 FvH4_5g14850 FvH4_5g14850 FvH4_5g14850
malus_domestica	MD05G1039700.v1.1 MD09G1287400.v1.1 MD10G1045300.v1.1
prunus_persica	Prupe.1G402600_v2.0.a1 Prupe.8G052200_v2.0.a1 Prupe.8G052200_v2.0.a1
pyrus_communis	pycom05g03240 pycom10g03170
rosa_chinensis	RchiOBHm_Chr3g0456471 RchiOBHm_Chr6g0272381 RchiOBHm_Chr7g0181531
rosa_laevigata	RLG00000005185 RLG00000013677 RLG00000025303
rosa_multiflora	Rmu_co8205282.1_g000001 Rmu_sc0004621.1_g000033 Rmu_sc0010043.1_g000002 Rmu_sc0023867.1_g000001 Rmu_sc0029422.1_g000002
rosa_roxburghii	Rroxscaffold_3G00271920 Rroxscaffold_6G00422730 Rroxscaffold_7G00196330
rosa_rugosa	Rorug03G0013200 Rorug03G0013300 Rorug06G0068700 Rorug06G0442100
rosa_samantha	Rh3AG073600 Rh3BG075500 Rh3CG075000 Rh3DG076800 Rh6AG184800 Rh6BG188100 Rh6DG177800 Rh7AG044200 Rh7BG043300 Rh7CG045100 Rh7DG043800
rosa_wichuraiana	Rw3G006310 Rw6G015980 Rw7G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	128
AciI	CCGC	5 cut(s)	332, 384, 387, 390, 504
AclWI	GGATC	1 cut(s)	342
AcsI	RAATTY	2 cut(s)	189, 514
AfiI	CCNNNNNNNGG	6 cut(s)	41, 110, 121, 243, 331, 462
AflIII	ACRYGT	1 cut(s)	204
AgsI	TTSAA	2 cut(s)	82, 484
AleI	CACNNNNGTG	1 cut(s)	132
AluBI	AGCT	1 cut(s)	354
AluI	AGCT	1 cut(s)	354
Alw21I	GWGCWC	3 cut(s)	12, 129, 356
Alw26I	GTCTC	1 cut(s)	431
Alw44I	GTGCAC	1 cut(s)	125
AlwI	GGATC	1 cut(s)	342
AlwNI	CAGNNNCTG	1 cut(s)	274
AoxI	GGCC	3 cut(s)	32, 112, 427
ApaLI	GTGCAC	1 cut(s)	125
ApoI	RAATTY	2 cut(s)	189, 514
Asp700I	GAANNNNTTC	1 cut(s)	193
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	2 cut(s)	356, 512
BaeGI	GKGCMC	1 cut(s)	129
BanII	GRGCYC	1 cut(s)	356
BbsI	GAAGAC	1 cut(s)	327
Bbv12I	GWGCWC	3 cut(s)	12, 129, 356
BccI	CCATC	1 cut(s)	443
BciVI	GTATCC	2 cut(s)	33, 49
BcoDI	GTCTC	1 cut(s)	431
BfaI	CTAG	1 cut(s)	544
BfmI	CTRYAG	2 cut(s)	130, 499
BfuAI	ACCTGC	1 cut(s)	128
BfuI	GTATCC	2 cut(s)	33, 49
BglII	AGATCT	1 cut(s)	217
BisI	GCNGC	3 cut(s)	384, 387, 390
BlsI	GCNGC	3 cut(s)	385, 388, 391
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	1 cut(s)	454
BmrI	ACTGGG	1 cut(s)	110
BmuI	ACTGGG	1 cut(s)	110
BpiI	GAAGAC	1 cut(s)	327
BpmI	CTGGAG	1 cut(s)	296
BsaJI	CCNNGG	3 cut(s)	40, 51, 109
BsaWI	WCCGGW	1 cut(s)	455
Bsc4I	CCNNNNNNNGG	6 cut(s)	41, 110, 121, 243, 331, 462
Bse1I	ACTGG	3 cut(s)	116, 157, 279
BseDI	CCNNGG	3 cut(s)	40, 51, 109
BseLI	CCNNNNNNNGG	6 cut(s)	41, 110, 121, 243, 331, 462
BseMII	CTCAG	2 cut(s)	240, 501
BseNI	ACTGG	3 cut(s)	116, 157, 279
BseSI	GKGCMC	1 cut(s)	129
BsgI	GTGCAG	3 cut(s)	148, 156, 287
BshFI	GGCC	3 cut(s)	34, 114, 429
BsiHKAI	GWGCWC	3 cut(s)	12, 129, 356
BsiSI	CCGG	1 cut(s)	456
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	6 cut(s)	41, 110, 121, 243, 331, 462
BsmAI	GTCTC	1 cut(s)	431
BsmBI	CGTCTC	1 cut(s)	431
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	3 cut(s)	34, 114, 429
Bsp1286I	GDGCHC	3 cut(s)	12, 129, 356
Bsp143I	GATC	2 cut(s)	217, 334
Bsp19I	CCATGG	1 cut(s)	40
BspACI	CCGC	5 cut(s)	332, 384, 387, 390, 504
BspANI	GGCC	3 cut(s)	34, 114, 429
BspCNI	CTCAG	2 cut(s)	241, 500
BspLI	GGNNCC	1 cut(s)	454
BspMAI	CTGCAG	1 cut(s)	134
BspMI	ACCTGC	1 cut(s)	128
BspPI	GGATC	1 cut(s)	342
BsrI	ACTGG	3 cut(s)	116, 157, 279
BssECI	CCNNGG	3 cut(s)	40, 51, 109
BssMI	GATC	2 cut(s)	217, 334
BssT1I	CCWWGG	2 cut(s)	40, 109
Bst4CI	ACNGT	1 cut(s)	408
BstDEI	CTNAG	3 cut(s)	249, 433, 487
BstDSI	CCRYGG	2 cut(s)	40, 51
BstKTI	GATC	2 cut(s)	220, 337
BstMAI	GTCTC	1 cut(s)	431
BstMBI	GATC	2 cut(s)	217, 334
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstNSI	RCATGY	1 cut(s)	208
BstSFI	CTRYAG	2 cut(s)	130, 499
BstSLI	GKGCMC	1 cut(s)	129
BstV2I	GAAGAC	1 cut(s)	327
BstX2I	RGATCY	2 cut(s)	217, 334
BstYI	RGATCY	2 cut(s)	217, 334
BsuI	GTATCC	2 cut(s)	33, 49
BsuRI	GGCC	3 cut(s)	34, 114, 429
BtgI	CCRYGG	2 cut(s)	40, 51
BtsI	GCAGTG	2 cut(s)	127, 139
BtsIMutI	CAGTG	3 cut(s)	127, 139, 272
BveI	ACCTGC	1 cut(s)	128
CaiI	CAGNNNCTG	1 cut(s)	274
Cfr13I	GGNCC	1 cut(s)	113
CseI	GACGC	1 cut(s)	448
CviAII	CATG	3 cut(s)	41, 205, 328
CviJI	RGCY	4 cut(s)	34, 114, 354, 429
CviKI_1	RGCY	4 cut(s)	34, 114, 354, 429
DdeI	CTNAG	3 cut(s)	249, 433, 487
DpnI	GATC	2 cut(s)	219, 336
DpnII	GATC	2 cut(s)	217, 334
EciI	GGCGGA	1 cut(s)	347
Ecl136II	GAGCTC	1 cut(s)	354
Eco130I	CCWWGG	2 cut(s)	40, 109
Eco24I	GRGCYC	1 cut(s)	356
Eco53kI	GAGCTC	1 cut(s)	354
EcoICRI	GAGCTC	1 cut(s)	354
EcoRI	GAATTC	1 cut(s)	189
EcoT14I	CCWWGG	2 cut(s)	40, 109
EcoT38I	GRGCYC	1 cut(s)	356
ErhI	CCWWGG	2 cut(s)	40, 109
Esp3I	CGTCTC	1 cut(s)	431
FaeI	CATG	3 cut(s)	44, 208, 331
FaiI	YATR	7 cut(s)	15, 42, 91, 160, 174, 206, 329
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	3 cut(s)	40, 204, 327
Fnu4HI	GCNGC	3 cut(s)	384, 387, 390
FriOI	GRGCYC	1 cut(s)	356
Fsp4HI	GCNGC	3 cut(s)	384, 387, 390
FspBI	CTAG	1 cut(s)	544
GluI	GCNGC	3 cut(s)	384, 387, 390
GsuI	CTGGAG	1 cut(s)	296
HaeIII	GGCC	3 cut(s)	34, 114, 429
HapII	CCGG	1 cut(s)	456
HgaI	GACGC	1 cut(s)	448
Hin1II	CATG	3 cut(s)	44, 208, 331
HinfI	GANTC	2 cut(s)	416, 421
HpaII	CCGG	1 cut(s)	456
HphI	GGTGA	2 cut(s)	356, 512
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	2 cut(s)	186, 339
Hpy188III	TCNNGA	2 cut(s)	26, 71
Hpy8I	GTNNAC	1 cut(s)	127
Hpy99I	CGWCG	1 cut(s)	383
HpyCH4III	ACNGT	1 cut(s)	408
HpyCH4IV	ACGT	2 cut(s)	239, 378
HpyCH4V	TGCA	6 cut(s)	127, 132, 137, 165, 268, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpyF3I	CTNAG	3 cut(s)	249, 433, 487
HpySE526I	ACGT	2 cut(s)	239, 378
Hsp92II	CATG	3 cut(s)	44, 208, 331
Kzo9I	GATC	2 cut(s)	217, 334
LmnI	GCTCC	3 cut(s)	15, 277, 351
LpnPI	CCDG	9 cut(s)	39, 48, 123, 129, 138, 183, 260, 469, 495
MaeI	CTAG	1 cut(s)	544
MaeII	ACGT	2 cut(s)	239, 378
MalI	GATC	2 cut(s)	219, 336
MboI	GATC	2 cut(s)	217, 334
MboII	GAAGA	1 cut(s)	332
MfeI	CAATTG	2 cut(s)	60, 411
MflI	RGATCY	2 cut(s)	217, 334
MhlI	GDGCHC	3 cut(s)	12, 129, 356
MluCI	AATT	7 cut(s)	60, 168, 180, 189, 314, 411, 514
MlyI	GAGTC	1 cut(s)	410
MnlI	CCTC	5 cut(s)	141, 335, 355, 440, 533
MroXI	GAANNNNTTC	1 cut(s)	193
MslI	CAYNNNNRTG	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	504
MspI	CCGG	1 cut(s)	456
MunI	CAATTG	2 cut(s)	60, 411
MwoI	GCNNNNNNNGC	1 cut(s)	389
NcoI	CCATGG	1 cut(s)	40
NdeII	GATC	2 cut(s)	217, 334
NlaIII	CATG	3 cut(s)	44, 208, 331
NlaIV	GGNNCC	1 cut(s)	454
NspI	RCATGY	1 cut(s)	208
OliI	CACNNNNGTG	1 cut(s)	132
PciI	ACATGT	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	1 cut(s)	236
PdmI	GAANNNNTTC	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	421
PkrI	GCNGC	3 cut(s)	385, 388, 391
PleI	GAGTC	1 cut(s)	410
PpsI	GAGTC	1 cut(s)	410
PscI	ACATGT	1 cut(s)	204
Psp124BI	GAGCTC	1 cut(s)	356
PspN4I	GGNNCC	1 cut(s)	454
PspPI	GGNCC	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	134
PstNI	CAGNNNCTG	1 cut(s)	274
PsuI	RGATCY	2 cut(s)	217, 334
RseI	CAYNNNNRTG	1 cut(s)	132
SacI	GAGCTC	1 cut(s)	356
SatI	GCNGC	3 cut(s)	384, 387, 390
Sau3AI	GATC	2 cut(s)	217, 334
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	1 cut(s)	410
SduI	GDGCHC	3 cut(s)	12, 129, 356
SetI	ASST	8 cut(s)	111, 142, 242, 327, 356, 366, 381, 525
SfcI	CTRYAG	2 cut(s)	130, 499
SmiMI	CAYNNNNRTG	1 cut(s)	132
Sse9I	AATT	7 cut(s)	60, 168, 180, 189, 314, 411, 514
SsiI	CCGC	5 cut(s)	332, 384, 387, 390, 504
SspI	AATATT	2 cut(s)	78, 284
SspMI	CTAG	1 cut(s)	544
SstI	GAGCTC	1 cut(s)	356
StyI	CCWWGG	2 cut(s)	40, 109
TaaI	ACNGT	1 cut(s)	408
TaiI	ACGT	2 cut(s)	242, 381
TaqI	TCGA	1 cut(s)	419
TasI	AATT	7 cut(s)	60, 168, 180, 189, 314, 411, 514
TauI	GCSGC	3 cut(s)	386, 389, 392
TfiI	GAWTC	1 cut(s)	421
TscAI	CASTG	3 cut(s)	134, 139, 279
TspDTI	ATGAA	2 cut(s)	161, 327
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	3 cut(s)	134, 139, 279
VneI	GTGCAC	1 cut(s)	125
XapI	RAATTY	2 cut(s)	189, 514
XceI	RCATGY	1 cut(s)	208
XmnI	GAANNNNTTC	1 cut(s)	193
XspI	CTAG	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.