pycom05g03240

Protein-tyrosine-phosphatase PTP1-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
3734441 .. 3740824
6384 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g03240.4

Sequence Viewer

Length: 1056 bp
ATGGCCGCCACCGCCTCTTCCGCCGCAGCCAAACCCCTCCCTTCCTTGAACGTCTCGGCGGATTCTCCTCCTCCGAAACTCGCCCTCACGCTCGATCAGTACAAGTACTGCTCTCAGGCTCTCAAGCTCTTTAAGGGAAAGCTCCAGATGCGTGACCATATCAACCAGGAGTTCGCTCAGCTGCAGGCCAAGAGGATGACATCTTCTGAGAGGAAGAGAAATTGCACTGTGGCTCTTGACAATGTCAATTCGAGCAAAAACCGATACACCGATGTCGTGCCATTTGACAAAAATAGGGTTGTTCTCAACTCCTCGAAGGATTACAGACCTTCCGCAAGAGGTTACATCAACGCCAGCTTAATCACGACTAGTTCTTCCGAAAGCATTTCTCAGTTTATAGCAACACAAGGTCCACTTCCCCACACCTATGAGGATTTCTGGGAGATGGTACTTGAGCAACGCTGCCCGGTGGTCATCATGCTTACTCGTTTAATCGACTGTTACACGATGGTTAAATGTGGAGATTATTATCAGGCTGAAGATGGCCCTAGAGAATTCGGTAACATATGTATAAGCACTAAGTGGCTAAGAACTACTGACACTTCATTAGTATTACGCCTTTTGGAGGTCAATAATAAAGAGTCCGAGGAACCACCCATGTCTGTTTTGCACATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCAAACAACACGATTGCTGTCCGTGAAATCTTGAAAAGATTATATAACGTGCCACCGAACCTTGGCCCAATTGTGGTGCATTGCAGTGCAGGTATTGGGAGAACTGGAACATACTGCACAATTCATAATACTGTGCAAAGAATTCTTGCTGGGGACATGTCTGCTTTAGATCTCGTTGATACAATAACCACATTTCGGTCTCAGCGAATTGGAATGGTCCAGACACTGGAGCAATTTTTTTTCTGTTATTCTGCCATCGTTGATGAATTGGAAGACCTCATCTCGGATTTGAATAGTGAAACGAGCTCAAATTCTTGTGTCCTAAAAGAAGATTGTCCGCAGCATTGTTAA

Protein Analysis

352

Amino Acids

39.41

Weight (kDa)

6.01

Isoelectric Point (pI)

45.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 785
AccB7I CCANNNNNTGG 1 cut(s) 931
AciI CCGC 7 cut(s) 6, 12, 21, 24, 59, 333, 1043
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 554, 846, 1015
AcuI CTGAAG 1 cut(s) 558
AdeI CACNNNGTG 1 cut(s) 582
AfaI GTAC 3 cut(s) 101, 107, 450
AfiI CCNNNNNNNGG 7 cut(s) 625, 698, 767, 778, 900, 931, 988
AflIII ACRYGT 1 cut(s) 861
AgsI TTSAA 3 cut(s) 49, 739, 997
AhlI ACTAGT 1 cut(s) 368
AjnI CCWGG 1 cut(s) 165
AluBI AGCT 5 cut(s) 127, 142, 181, 357, 1011
AluI AGCT 5 cut(s) 127, 142, 181, 357, 1011
Alw21I GWGCWC 1 cut(s) 1013
Alw26I GTCTC 2 cut(s) 58, 909
AlwNI CAGNNNCTG 1 cut(s) 931
AoxI GGCC 5 cut(s) 3, 186, 544, 689, 769
ApeKI GCWGC 4 cut(s) 26, 181, 462, 1045
ApoI RAATTY 3 cut(s) 554, 846, 1015
AspS9I GGNCC 4 cut(s) 410, 545, 770, 922
AsuC2I CCSGG 1 cut(s) 467
AvaII GGWCC 2 cut(s) 410, 922
BanII GRGCYC 1 cut(s) 1013
BbsI GAAGAC 1 cut(s) 984
Bbv12I GWGCWC 1 cut(s) 1013
BbvI GCAGC 3 cut(s) 38, 168, 449
BccI CCATC 4 cut(s) 439, 502, 536, 968
BciT130I CCWGG 1 cut(s) 167
BciVI GTATCC 1 cut(s) 690
BcnI CCSGG 1 cut(s) 467
BcoDI GTCTC 2 cut(s) 58, 909
BcuI ACTAGT 1 cut(s) 368
BfaI CTAG 2 cut(s) 369, 549
BfmI CTRYAG 1 cut(s) 182
BfuAI ACCTGC 1 cut(s) 785
BfuI GTATCC 1 cut(s) 690
BglII AGATCT 1 cut(s) 874
BisI GCNGC 6 cut(s) 6, 24, 27, 182, 463, 1046
BlpI GCTNAGC 1 cut(s) 177
BlsI GCNGC 6 cut(s) 7, 25, 28, 183, 464, 1047
BmcAI AGTACT 1 cut(s) 107
Bme1390I CCNGG 2 cut(s) 167, 467
Bme18I GGWCC 2 cut(s) 410, 922
BmgT120I GGNCC 4 cut(s) 410, 545, 770, 922
BmiI GGNNCC 1 cut(s) 651
BmrFI CCNGG 2 cut(s) 167, 467
BmsI GCATC 1 cut(s) 138
BpiI GAAGAC 1 cut(s) 984
BpmI CTGGAG 2 cut(s) 128, 953
Bpu1102I GCTNAGC 1 cut(s) 177
BpuEI CTTGAG 2 cut(s) 107, 473
BpuMI CCSGG 1 cut(s) 467
BsaBI GATNNNNATC 1 cut(s) 528
BsaI GGTCTC 1 cut(s) 909
BsaJI CCNNGG 3 cut(s) 645, 697, 766
Bsc4I CCNNNNNNNGG 7 cut(s) 625, 698, 767, 778, 900, 931, 988
Bse1I ACTGG 2 cut(s) 814, 936
Bse3DI GCAATG 1 cut(s) 784
Bse8I GATNNNNATC 1 cut(s) 528
BseBI CCWGG 1 cut(s) 167
BseDI CCNNGG 3 cut(s) 645, 697, 766
BseGI GGATG 1 cut(s) 201
BseJI GATNNNNATC 1 cut(s) 528
BseLI CCNNNNNNNGG 7 cut(s) 625, 698, 767, 778, 900, 931, 988
BseMI GCAATG 1 cut(s) 784
BseMII CTCAG 5 cut(s) 128, 191, 198, 404, 920
BseNI ACTGG 2 cut(s) 814, 936
BseRI GAGGAG 3 cut(s) 57, 60, 301
BseXI GCAGC 3 cut(s) 38, 168, 449
BseYI CCCAGC 1 cut(s) 854
BsgI GTGCAG 2 cut(s) 805, 813
BshFI GGCC 5 cut(s) 5, 188, 546, 691, 771
BsiHKAI GWGCWC 1 cut(s) 1013
BsiSI CCGG 1 cut(s) 467
BslFI GGGAC 1 cut(s) 872
BslI CCNNNNNNNGG 7 cut(s) 625, 698, 767, 778, 900, 931, 988
BsmAI GTCTC 2 cut(s) 58, 909
BsmBI CGTCTC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 872
BsnI GGCC 5 cut(s) 5, 188, 546, 691, 771
Bso31I GGTCTC 1 cut(s) 909
Bsp1286I GDGCHC 1 cut(s) 1013
Bsp143I GATC 2 cut(s) 94, 874
Bsp1720I GCTNAGC 1 cut(s) 177
Bsp19I CCATGG 1 cut(s) 697
BspACI CCGC 7 cut(s) 6, 12, 21, 24, 59, 333, 1043
BspANI GGCC 5 cut(s) 5, 188, 546, 691, 771
BspCNI CTCAG 5 cut(s) 127, 190, 199, 403, 919
BspLI GGNNCC 1 cut(s) 651
BspMAI CTGCAG 1 cut(s) 186
BspMI ACCTGC 1 cut(s) 785
BspTNI GGTCTC 1 cut(s) 909
BsrDI GCAATG 1 cut(s) 784
BsrI ACTGG 2 cut(s) 814, 936
BssECI CCNNGG 3 cut(s) 645, 697, 766
BssMI GATC 2 cut(s) 94, 874
BssT1I CCWWGG 2 cut(s) 697, 766
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 3 cut(s) 229, 500, 838
Bst6I CTCTTC 2 cut(s) 22, 209
BstC8I GCNNGC 2 cut(s) 186, 355
BstDEI CTNAG 7 cut(s) 114, 177, 207, 390, 579, 587, 906
BstDSI CCRYGG 1 cut(s) 697
BstENI CCTNNNNNAGG 1 cut(s) 623
BstF5I GGATG 1 cut(s) 201
BstKTI GATC 2 cut(s) 97, 877
BstMAI GTCTC 2 cut(s) 58, 909
BstMBI GATC 2 cut(s) 94, 874
BstMWI GCNNNNNNNGC 3 cut(s) 11, 20, 148
BstNI CCWGG 1 cut(s) 167
BstNSI RCATGY 1 cut(s) 865
BstSCI CCNGG 2 cut(s) 165, 465
BstSFI CTRYAG 1 cut(s) 182
BstV1I GCAGC 3 cut(s) 38, 168, 449
BstV2I GAAGAC 1 cut(s) 984
BstX2I RGATCY 1 cut(s) 874
BstYI RGATCY 1 cut(s) 874
BsuI GTATCC 1 cut(s) 690
BsuRI GGCC 5 cut(s) 5, 188, 546, 691, 771
BtgI CCRYGG 1 cut(s) 697
BtsCI GGATG 1 cut(s) 201
BtsI GCAGTG 1 cut(s) 796
BtsIMutI CAGTG 3 cut(s) 225, 796, 929
BveI ACCTGC 1 cut(s) 785
Cac8I GCNNGC 2 cut(s) 186, 355
CaiI CAGNNNCTG 1 cut(s) 931
Cfr13I GGNCC 4 cut(s) 410, 545, 770, 922
Csp6I GTAC 3 cut(s) 100, 106, 449
CviAII CATG 4 cut(s) 478, 658, 698, 862
CviQI GTAC 3 cut(s) 100, 106, 449
DdeI CTNAG 7 cut(s) 114, 177, 207, 390, 579, 587, 906
DpnI GATC 2 cut(s) 96, 876
DpnII GATC 2 cut(s) 94, 874
DraIII CACNNNGTG 1 cut(s) 582
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 22, 209
EarI CTCTTC 2 cut(s) 22, 209
EciI GGCGGA 2 cut(s) 10, 74
Ecl136II GAGCTC 1 cut(s) 1011
Eco130I CCWWGG 2 cut(s) 697, 766
Eco24I GRGCYC 1 cut(s) 1013
Eco31I GGTCTC 1 cut(s) 909
Eco47I GGWCC 2 cut(s) 410, 922
Eco53kI GAGCTC 1 cut(s) 1011
Eco57I CTGAAG 1 cut(s) 558
EcoICRI GAGCTC 1 cut(s) 1011
EcoNI CCTNNNNNAGG 1 cut(s) 623
EcoRI GAATTC 2 cut(s) 554, 846
EcoRII CCWGG 1 cut(s) 165
EcoT14I CCWWGG 2 cut(s) 697, 766
EcoT38I GRGCYC 1 cut(s) 1013
ErhI CCWWGG 2 cut(s) 697, 766
Esp3I CGTCTC 1 cut(s) 58
FaeI CATG 4 cut(s) 481, 661, 701, 865
FalI AAGNNNNNCTT 2 cut(s) 399, 431
FaqI GGGAC 1 cut(s) 872
FatI CATG 4 cut(s) 477, 657, 697, 861
FauNDI CATATG 1 cut(s) 566
Fnu4HI GCNGC 6 cut(s) 6, 24, 27, 182, 463, 1046
FokI GGATG 1 cut(s) 208
FriOI GRGCYC 1 cut(s) 1013
Fsp4HI GCNGC 6 cut(s) 6, 24, 27, 182, 463, 1046
FspBI CTAG 2 cut(s) 369, 549
GluI GCNGC 6 cut(s) 6, 24, 27, 182, 463, 1046
GsaI CCCAGC 1 cut(s) 858
GsuI CTGGAG 2 cut(s) 128, 953
HaeIII GGCC 5 cut(s) 5, 188, 546, 691, 771
HapII CCGG 1 cut(s) 467
Hin1II CATG 4 cut(s) 481, 661, 701, 865
HinfI GANTC 2 cut(s) 62, 641
HpaII CCGG 1 cut(s) 467
Hpy166II GTNNAC 1 cut(s) 413
Hpy188I TCNGA 5 cut(s) 75, 208, 379, 646, 991
Hpy188III TCNNGA 6 cut(s) 145, 236, 364, 683, 736, 925
Hpy8I GTNNAC 1 cut(s) 413
HpyAV CCTTC 3 cut(s) 51, 310, 339
HpyCH4III ACNGT 3 cut(s) 229, 500, 838
HpyCH4IV ACGT 2 cut(s) 51, 753
HpyCH4V TGCA 8 cut(s) 184, 225, 670, 784, 789, 794, 822, 841
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 20, 148
HpyF3I CTNAG 7 cut(s) 114, 177, 207, 390, 579, 587, 906
HpySE526I ACGT 2 cut(s) 51, 753
Hsp92II CATG 4 cut(s) 481, 661, 701, 865
Kzo9I GATC 2 cut(s) 94, 874
LmnI GCTCC 2 cut(s) 147, 934
Lsp1109I GCAGC 3 cut(s) 38, 168, 449
LweI GCATC 1 cut(s) 138
MaeI CTAG 2 cut(s) 369, 549
MaeII ACGT 2 cut(s) 51, 753
MaeIII GTNAC 4 cut(s) 152, 341, 500, 560
MalI GATC 2 cut(s) 96, 876
MboI GATC 2 cut(s) 94, 874
MboII GAAGA 7 cut(s) 9, 195, 226, 366, 551, 989, 1046
MfeI CAATTG 1 cut(s) 774
MflI RGATCY 1 cut(s) 874
MhlI GDGCHC 1 cut(s) 1013
MlyI GAGTC 1 cut(s) 650
MseI TTAA 5 cut(s) 132, 359, 491, 513, 1054
MslI CAYNNNNRTG 2 cut(s) 426, 789
MspA1I CMGCKG 1 cut(s) 181
MspI CCGG 1 cut(s) 467
MspR9I CCNGG 2 cut(s) 167, 467
MunI CAATTG 1 cut(s) 774
MvaI CCWGG 1 cut(s) 167
MwoI GCNNNNNNNGC 3 cut(s) 11, 20, 148
NciI CCSGG 1 cut(s) 467
NcoI CCATGG 1 cut(s) 697
NdeI CATATG 1 cut(s) 566
NdeII GATC 2 cut(s) 94, 874
NlaIII CATG 4 cut(s) 481, 661, 701, 865
NlaIV GGNNCC 1 cut(s) 651
NmeAIII GCCGAG 1 cut(s) 35
NmuCI GTSAC 1 cut(s) 152
NspI RCATGY 1 cut(s) 865
PciI ACATGT 1 cut(s) 861
PcsI WCGNNNNNNNCGW 1 cut(s) 907
PfeI GAWTC 1 cut(s) 62
PflFI GACNNNGTC 1 cut(s) 242
PflMI CCANNNNNTGG 1 cut(s) 931
PkrI GCNGC 6 cut(s) 7, 25, 28, 183, 464, 1047
PleI GAGTC 1 cut(s) 649
PpsI GAGTC 1 cut(s) 649
PscI ACATGT 1 cut(s) 861
Psp124BI GAGCTC 1 cut(s) 1013
Psp6I CCWGG 1 cut(s) 165
PspFI CCCAGC 1 cut(s) 854
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 651
PspPI GGNCC 4 cut(s) 410, 545, 770, 922
PstI CTGCAG 1 cut(s) 186
PstNI CAGNNNCTG 1 cut(s) 931
PsuI RGATCY 1 cut(s) 874
PsyI GACNNNGTC 1 cut(s) 242
PvuII CAGCTG 1 cut(s) 181
RsaI GTAC 3 cut(s) 101, 107, 450
RsaNI GTAC 3 cut(s) 100, 106, 449
RseI CAYNNNNRTG 2 cut(s) 426, 789
SacI GAGCTC 1 cut(s) 1013
SaqAI TTAA 5 cut(s) 132, 359, 491, 513, 1054
SatI GCNGC 6 cut(s) 6, 24, 27, 182, 463, 1046
Sau3AI GATC 2 cut(s) 94, 874
Sau96I GGNCC 4 cut(s) 410, 545, 770, 922
ScaI AGTACT 1 cut(s) 107
SchI GAGTC 1 cut(s) 650
ScrFI CCNGG 2 cut(s) 167, 467
SduI GDGCHC 1 cut(s) 1013
SfaNI GCATC 1 cut(s) 138
SfcI CTRYAG 1 cut(s) 182
SinI GGWCC 2 cut(s) 410, 922
SmiMI CAYNNNNRTG 2 cut(s) 426, 789
SmlI CTYRAG 2 cut(s) 122, 452
SmoI CTYRAG 2 cut(s) 122, 452
SpeI ACTAGT 1 cut(s) 368
SsiI CCGC 7 cut(s) 6, 12, 21, 24, 59, 333, 1043
SspMI CTAG 2 cut(s) 369, 549
SstI GAGCTC 1 cut(s) 1013
StyD4I CCNGG 2 cut(s) 165, 465
StyI CCWWGG 2 cut(s) 697, 766
TaaI ACNGT 3 cut(s) 229, 500, 838
TaiI ACGT 2 cut(s) 54, 756
TaqI TCGA 4 cut(s) 93, 251, 314, 495
TaqII GACCGA 1 cut(s) 891
TatI WGTACW 2 cut(s) 99, 105
TauI GCSGC 2 cut(s) 8, 26
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 5 cut(s) 132, 359, 491, 513, 1054
Tru9I TTAA 5 cut(s) 132, 359, 491, 513, 1054
TscAI CASTG 3 cut(s) 232, 796, 936
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 4 cut(s) 26, 181, 462, 1045
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 3 cut(s) 594, 818, 984
TspGWI ACGGA 1 cut(s) 716
TspRI CASTG 3 cut(s) 232, 796, 936
Tth111I GACNNNGTC 1 cut(s) 242
Van91I CCANNNNNTGG 1 cut(s) 931
VpaK11BI GGWCC 2 cut(s) 410, 922
XagI CCTNNNNNAGG 1 cut(s) 623
XapI RAATTY 3 cut(s) 554, 846, 1015
XceI RCATGY 1 cut(s) 865
XspI CTAG 2 cut(s) 369, 549
ZrmI AGTACT 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.