Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001574

Physical Location & Seq

Genomic Coordinates Forward (+)

3524465 .. 3525732

Gene Structure 1268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g03170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCCGCCACCGCCTCTTCCGCCGCAGCCCAACCCCTCCCTTCCTTGAAAGTCTCGGCCGATTCTCCGCCTCCGAAACTCGCCCTCACCCCCGATCAGTACAAGTACTGCTCTCAGGCTCTCAAGCTCTTCAAAGAAAAGCTCCAGATGCCTGACCATATCAACCAGGAGTTCGCTCAGCTACAGGCCAAGAGGATTACATTATCTGAGATGAAGAGGAACTGCACTGTGGCTCTTGACAGTGTCAATTCCAGCAAAAACCGATACACTGATGTCGTACCATTTGACAAAAATAGGGTTGTTCTCAACTCCTGTAAGGATTACAGACCTTCTGCGCGGGGCTACATCAACGCCAGCTTAATCGCGACTAGTTCCTCCAAAAGCATTTCTCGGTTTATAGCAACACAAGGTCCACTTCCGCACACATATGAGGATTTCTGGGAAATGGTACTTGAGCAACGCTGCCCGGTGGTTATCATGCTTACTCGCTTAGTTGACTGTTACACGATGGTTAAATGTGGAGATTATTTTCAGGCTGAAGATGGCCCTAGGGAATTCGGTAACATATGTATAAGCACCAAGTGGCTAAGAACTACTGACACTTCATTAGTGTTGCGCCTTTTGGAGGTTAACTACAAAGAGGCAAGGCATCACATGATTTTCATTCTTGTCCAGGATACAAATGGTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000188 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006469 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010563 GO:0010605 GO:0010646 GO:0010648 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031347 GO:0031348 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033549 GO:0033550 GO:0033673 GO:0035335 GO:0035556 GO:0036211 GO:0042325 GO:0042326 GO:0042578 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043407 GO:0043408 GO:0043409 GO:0043412 GO:0043549 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045936 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071901 GO:0071944 GO:0080090 GO:0080134 GO:0140096 GO:1901564 GO:1902531 GO:1902532 GO:1990264

KEGG Pathways

Metabolic & Signaling

ko04520 ko04910 ko04931 map04520 map04910 map04931

Pfam Domains

Protein Families

Y_phosphatase

Protein Analysis

231

Amino Acids

25.98

Weight (kDa)

8.73

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Y_phosphatase	PF00102	83 - 217	1.9e-34	Protein-tyrosine phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71860 AT1G71860 AT1G71860
fragaria_vesca	FvH4_2g12360 FvH4_2g12360 FvH4_2g12360 FvH4_2g12360 FvH4_5g14850 FvH4_5g14850 FvH4_5g14850
malus_domestica	MD05G1039700.v1.1 MD09G1287400.v1.1 MD10G1045300.v1.1
prunus_persica	Prupe.1G402600_v2.0.a1 Prupe.8G052200_v2.0.a1 Prupe.8G052200_v2.0.a1
pyrus_communis	pycom05g03240 pycom10g03170
rosa_chinensis	RchiOBHm_Chr3g0456471 RchiOBHm_Chr6g0272381 RchiOBHm_Chr7g0181531
rosa_laevigata	RLG00000005185 RLG00000013677 RLG00000025303
rosa_multiflora	Rmu_co8205282.1_g000001 Rmu_sc0004621.1_g000033 Rmu_sc0010043.1_g000002 Rmu_sc0023867.1_g000001 Rmu_sc0029422.1_g000002
rosa_roxburghii	Rroxscaffold_3G00271920 Rroxscaffold_6G00422730 Rroxscaffold_7G00196330
rosa_rugosa	Rorug03G0013200 Rorug03G0013300 Rorug06G0068700 Rorug06G0442100
rosa_samantha	Rh3AG073600 Rh3BG075500 Rh3CG075000 Rh3DG076800 Rh6AG184800 Rh6BG188100 Rh6DG177800 Rh7AG044200 Rh7BG043300 Rh7CG045100 Rh7DG043800
rosa_wichuraiana	Rw3G006310 Rw6G015980 Rw7G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	337, 365
AciI	CCGC	7 cut(s)	6, 12, 21, 24, 68, 337, 419
AcoI	YGGCCR	2 cut(s)	3, 57
AcsI	RAATTY	1 cut(s)	554
AcuI	CTGAAG	1 cut(s)	558
AdeI	CACNNNGTG	1 cut(s)	582
AfaI	GTAC	4 cut(s)	101, 107, 279, 450
AfiI	CCNNNNNNNGG	1 cut(s)	625
AgsI	TTSAA	2 cut(s)	49, 133
AhlI	ACTAGT	1 cut(s)	368
AjnI	CCWGG	2 cut(s)	165, 672
AluBI	AGCT	4 cut(s)	127, 142, 181, 357
AluI	AGCT	4 cut(s)	127, 142, 181, 357
Alw26I	GTCTC	1 cut(s)	58
AoxI	GGCC	4 cut(s)	3, 57, 186, 544
ApeKI	GCWGC	2 cut(s)	26, 462
ApoI	RAATTY	1 cut(s)	554
AspA2I	CCTAGG	1 cut(s)	548
AspLEI	GCGC	2 cut(s)	337, 618
AspS9I	GGNCC	2 cut(s)	410, 545
AsuC2I	CCSGG	1 cut(s)	467
AsuHPI	GGTGA	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	410
AvrII	CCTAGG	1 cut(s)	548
BbvI	GCAGC	2 cut(s)	38, 449
BccI	CCATC	2 cut(s)	502, 536
BciT130I	CCWGG	2 cut(s)	167, 674
BciVI	GTATCC	1 cut(s)	670
BcnI	CCSGG	1 cut(s)	467
BcoDI	GTCTC	1 cut(s)	58
BcuI	ACTAGT	1 cut(s)	368
BfaI	CTAG	2 cut(s)	369, 549
BfmI	CTRYAG	1 cut(s)	182
BfuI	GTATCC	1 cut(s)	670
BisI	GCNGC	4 cut(s)	6, 24, 27, 463
BlnI	CCTAGG	1 cut(s)	548
BlpI	GCTNAGC	1 cut(s)	177
BlsI	GCNGC	4 cut(s)	7, 25, 28, 464
BmcAI	AGTACT	1 cut(s)	107
Bme1390I	CCNGG	3 cut(s)	167, 467, 674
Bme18I	GGWCC	1 cut(s)	410
BmgT120I	GGNCC	2 cut(s)	410, 545
BmrFI	CCNGG	3 cut(s)	167, 467, 674
BmsI	GCATC	2 cut(s)	138, 658
BpmI	CTGGAG	1 cut(s)	128
Bpu1102I	GCTNAGC	1 cut(s)	177
BpuEI	CTTGAG	2 cut(s)	107, 473
BpuMI	CCSGG	1 cut(s)	467
BsaJI	CCNNGG	1 cut(s)	548
Bsc4I	CCNNNNNNNGG	1 cut(s)	625
BseBI	CCWGG	2 cut(s)	167, 674
BseDI	CCNNGG	1 cut(s)	548
BseLI	CCNNNNNNNGG	1 cut(s)	625
BseMII	CTCAG	3 cut(s)	128, 191, 198
BseX3I	CGGCCG	1 cut(s)	57
BseXI	GCAGC	2 cut(s)	38, 449
BsgI	GTGCAG	1 cut(s)	208
Bsh1236I	CGCG	2 cut(s)	337, 365
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	4 cut(s)	5, 59, 188, 546
BsiEI	CGRYCG	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	467
BslI	CCNNNNNNNGG	1 cut(s)	625
BsmAI	GTCTC	1 cut(s)	58
BsnI	GGCC	4 cut(s)	5, 59, 188, 546
Bsp143I	GATC	1 cut(s)	94
Bsp1720I	GCTNAGC	1 cut(s)	177
Bsp68I	TCGCGA	1 cut(s)	365
BspACI	CCGC	7 cut(s)	6, 12, 21, 24, 68, 337, 419
BspANI	GGCC	4 cut(s)	5, 59, 188, 546
BspCNI	CTCAG	3 cut(s)	127, 190, 199
BspFNI	CGCG	2 cut(s)	337, 365
BspQI	GCTCTTC	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	548
BssMI	GATC	1 cut(s)	94
BssT1I	CCWWGG	1 cut(s)	548
Bst2UI	CCWGG	2 cut(s)	167, 674
Bst4CI	ACNGT	3 cut(s)	229, 242, 500
Bst6I	CTCTTC	3 cut(s)	22, 134, 209
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	5 cut(s)	114, 177, 207, 490, 587
BstENI	CCTNNNNNAGG	1 cut(s)	623
BstFNI	CGCG	2 cut(s)	337, 365
BstHHI	GCGC	2 cut(s)	337, 618
BstKTI	GATC	1 cut(s)	97
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	1 cut(s)	94
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 20, 148
BstNI	CCWGG	2 cut(s)	167, 674
BstSCI	CCNGG	3 cut(s)	165, 465, 672
BstSFI	CTRYAG	1 cut(s)	182
BstUI	CGCG	2 cut(s)	337, 365
BstV1I	GCAGC	2 cut(s)	38, 449
BstZI	CGGCCG	1 cut(s)	57
BsuI	GTATCC	1 cut(s)	670
BsuRI	GGCC	4 cut(s)	5, 59, 188, 546
BtsIMutI	CAGTG	3 cut(s)	225, 247, 267
BtuMI	TCGCGA	1 cut(s)	365
Cac8I	GCNNGC	1 cut(s)	355
CfoI	GCGC	2 cut(s)	337, 618
Cfr13I	GGNCC	2 cut(s)	410, 545
Csp6I	GTAC	4 cut(s)	100, 106, 278, 449
CviAII	CATG	2 cut(s)	478, 655
CviQI	GTAC	4 cut(s)	100, 106, 278, 449
DdeI	CTNAG	5 cut(s)	114, 177, 207, 490, 587
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
DraIII	CACNNNGTG	1 cut(s)	582
EaeI	YGGCCR	2 cut(s)	3, 57
EagI	CGGCCG	1 cut(s)	57
Eam1104I	CTCTTC	3 cut(s)	22, 134, 209
EarI	CTCTTC	3 cut(s)	22, 134, 209
EciI	GGCGGA	2 cut(s)	10, 57
EclXI	CGGCCG	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	548
Eco47I	GGWCC	1 cut(s)	410
Eco52I	CGGCCG	1 cut(s)	57
Eco57I	CTGAAG	1 cut(s)	558
EcoNI	CCTNNNNNAGG	1 cut(s)	623
EcoRI	GAATTC	1 cut(s)	554
EcoRII	CCWGG	2 cut(s)	165, 672
EcoT14I	CCWWGG	1 cut(s)	548
ErhI	CCWWGG	1 cut(s)	548
FaeI	CATG	2 cut(s)	481, 658
FaiI	YATR	9 cut(s)	159, 398, 427, 429, 479, 566, 568, 572, 656
FalI	AAGNNNNNCTT	2 cut(s)	399, 431
FatI	CATG	2 cut(s)	477, 654
FauI	CCCGC	1 cut(s)	330
FauNDI	CATATG	2 cut(s)	427, 566
Fnu4HI	GCNGC	4 cut(s)	6, 24, 27, 463
Fsp4HI	GCNGC	4 cut(s)	6, 24, 27, 463
FspBI	CTAG	2 cut(s)	369, 549
GlaI	GCGC	2 cut(s)	336, 617
GluI	GCNGC	4 cut(s)	6, 24, 27, 463
GsuI	CTGGAG	1 cut(s)	128
HaeIII	GGCC	4 cut(s)	5, 59, 188, 546
HapII	CCGG	1 cut(s)	467
HhaI	GCGC	2 cut(s)	337, 618
Hin1II	CATG	2 cut(s)	481, 658
Hin6I	GCGC	2 cut(s)	335, 616
HinP1I	GCGC	2 cut(s)	335, 616
HincII	GTYRAC	2 cut(s)	496, 631
HindII	GTYRAC	2 cut(s)	496, 631
HinfI	GANTC	1 cut(s)	62
HpaI	GTTAAC	1 cut(s)	631
HpaII	CCGG	1 cut(s)	467
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	3 cut(s)	413, 496, 631
Hpy188I	TCNGA	2 cut(s)	75, 208
Hpy188III	TCNNGA	3 cut(s)	145, 236, 364
Hpy8I	GTNNAC	3 cut(s)	413, 496, 631
HpyAV	CCTTC	2 cut(s)	51, 339
HpyCH4III	ACNGT	3 cut(s)	229, 242, 500
HpyCH4V	TGCA	1 cut(s)	225
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 20, 148
HpyF3I	CTNAG	5 cut(s)	114, 177, 207, 490, 587
Hsp92II	CATG	2 cut(s)	481, 658
HspAI	GCGC	2 cut(s)	335, 616
KspAI	GTTAAC	1 cut(s)	631
Kzo9I	GATC	1 cut(s)	94
LguI	GCTCTTC	1 cut(s)	134
LmnI	GCTCC	1 cut(s)	147
Lsp1109I	GCAGC	2 cut(s)	38, 449
LweI	GCATC	2 cut(s)	138, 658
MaeI	CTAG	2 cut(s)	369, 549
MaeIII	GTNAC	2 cut(s)	500, 560
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	4 cut(s)	9, 121, 226, 551
MluCI	AATT	2 cut(s)	247, 554
MseI	TTAA	4 cut(s)	359, 513, 630, 691
MslI	CAYNNNNRTG	1 cut(s)	426
MspI	CCGG	1 cut(s)	467
MspR9I	CCNGG	3 cut(s)	167, 467, 674
MvaI	CCWGG	2 cut(s)	167, 674
MvnI	CGCG	2 cut(s)	337, 365
MwoI	GCNNNNNNNGC	3 cut(s)	11, 20, 148
NciI	CCSGG	1 cut(s)	467
NdeI	CATATG	2 cut(s)	427, 566
NdeII	GATC	1 cut(s)	94
NlaIII	CATG	2 cut(s)	481, 658
NmeAIII	GCCGAG	1 cut(s)	35
NruI	TCGCGA	1 cut(s)	365
PciSI	GCTCTTC	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	62
PflFI	GACNNNGTC	1 cut(s)	242
PfoI	TCCNGGA	1 cut(s)	672
PkrI	GCNGC	4 cut(s)	7, 25, 28, 464
Psp6I	CCWGG	2 cut(s)	165, 672
PspGI	CCWGG	2 cut(s)	165, 672
PspPI	GGNCC	2 cut(s)	410, 545
PsyI	GACNNNGTC	1 cut(s)	242
RruI	TCGCGA	1 cut(s)	365
RsaI	GTAC	4 cut(s)	101, 107, 279, 450
RsaNI	GTAC	4 cut(s)	100, 106, 278, 449
RseI	CAYNNNNRTG	1 cut(s)	426
SapI	GCTCTTC	1 cut(s)	134
SaqAI	TTAA	4 cut(s)	359, 513, 630, 691
SatI	GCNGC	4 cut(s)	6, 24, 27, 463
Sau3AI	GATC	1 cut(s)	94
Sau96I	GGNCC	2 cut(s)	410, 545
ScaI	AGTACT	1 cut(s)	107
ScrFI	CCNGG	3 cut(s)	167, 467, 674
SetI	ASST	7 cut(s)	129, 144, 183, 331, 359, 412, 630
SfaNI	GCATC	2 cut(s)	138, 658
SfcI	CTRYAG	1 cut(s)	182
SinI	GGWCC	1 cut(s)	410
SmiMI	CAYNNNNRTG	1 cut(s)	426
SmlI	CTYRAG	2 cut(s)	122, 452
SmoI	CTYRAG	2 cut(s)	122, 452
SpeI	ACTAGT	1 cut(s)	368
Sse9I	AATT	2 cut(s)	247, 554
SsiI	CCGC	7 cut(s)	6, 12, 21, 24, 68, 337, 419
SspMI	CTAG	2 cut(s)	369, 549
StyD4I	CCNGG	3 cut(s)	165, 465, 672
StyI	CCWWGG	1 cut(s)	548
TaaI	ACNGT	3 cut(s)	229, 242, 500
TasI	AATT	2 cut(s)	247, 554
TatI	WGTACW	2 cut(s)	99, 105
TauI	GCSGC	2 cut(s)	8, 26
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	4 cut(s)	359, 513, 630, 691
Tru9I	TTAA	4 cut(s)	359, 513, 630, 691
TscAI	CASTG	3 cut(s)	232, 247, 274
TseI	GCWGC	2 cut(s)	26, 462
TspDTI	ATGAA	3 cut(s)	227, 594, 652
TspRI	CASTG	3 cut(s)	232, 247, 274
Tth111I	GACNNNGTC	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	410
XagI	CCTNNNNNAGG	1 cut(s)	623
XapI	RAATTY	1 cut(s)	554
XcmI	CCANNNNNNNNNTGG	1 cut(s)	680
XmaJI	CCTAGG	1 cut(s)	548
XspI	CTAG	2 cut(s)	369, 549
ZrmI	AGTACT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.