AT1G71860

Protein tyrosine phosphatase, catalytic domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
27026677 .. 27029092
2416 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G71860.1

Sequence Viewer

Length: 1023 bp
ATGGCGACCGGTAAAACCTCTTCCGCCGCGAATCTTTTCACTGGCTCGACGCGTTTTGATTTATCATCCGCTGATTCGCCTCCTTCAAAACTCTCTCTCTCCTCCGATCAGCTCAACCACTGCCACCAAGCTCTCGGCGTTTTCCGGGGAAAGATCCAAAATCCTGACTCGATCGCTCATGAGTTTACCGGTTTACAGGCTAATAGGATGTGGCCATCGGAGCTGCTGCTAAACAGTACAGTGGCTATGAACAGTGTCAATGTTGAGAAAAACAGATACAGTGATGTTGTTCCATTTGACAAGAACAGGATTGTTCTGAATCCATGTAAAGACTCATCTGCAAAAGGATATGTGAATGCAAGCTTAATTAAGACGTCGGAGTCTGAGAGTATTTCTCAGTTCATAGCTACGCAAGGTCCTTTACCACACACGATGGAGGACTTCTGGGAGATGGTTATTCAGCAGCATTGCCCAATCATAGTGATGCTCACTCGATTGGTTGATAATAATAGGACTGTTAAATGCGGGGACTATTTTCAAGACGAAGATGGACCTAGAGAATTTGGCAACATATCTCTTACAACAAAGTGGATAAAGACTACTGACACTTCATTGATGTTACGGAATCTTGAGGTTAACTACAAGGAGACAGAGGATCAGCCCATGTCCGTTTTGCATATTCAGTATCCAGAATGGCCTGATCATGGAGTTCCCAAGGATACAGTGGCTGTCCGTGAAATTCTAAAAAGACTATATCAAGTACCACCTAGTCTCGGCCCAATCATTGTGCACTGCAGTGCAGGTATAGGAAGAACTGGAACATACTGTGCGATACATAACACAATCCAAAGAATTCTTGCTGGCGATATGTCTGCGTTGGATCTTGCTAAAACCGTGGCACTATTTCGCAAGCAACGCATTGGCATGGTTCAAACCATGGATCAATACTTCTTTTGCTACAATGCTATTGTTGATGAATTAGAAGATCTAACCGCGGGGACAAATGCTGGAACGAGTTCCTAA

Protein Analysis

340

Amino Acids

37.8

Weight (kDa)

5.86

Isoelectric Point (pI)

31.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Y_phosphatase PF00102 87 - 324 1.4e-75 Protein-tyrosine phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 379
AatII GACGTC 1 cut(s) 377
Acc36I ACCTGC 1 cut(s) 791
AccII CGCG 3 cut(s) 29, 52, 995
AciI CCGC 6 cut(s) 24, 27, 69, 525, 993, 995
AclWI GGATC 4 cut(s) 148, 663, 888, 948
AcoI YGGCCR 1 cut(s) 212
AcsI RAATTY 3 cut(s) 560, 738, 852
AcyI GRCGYC 1 cut(s) 374
AfaI GTAC 2 cut(s) 238, 762
AfiI CCNNNNNNNGG 2 cut(s) 704, 773
AflIII ACRYGT 1 cut(s) 50
AgeI ACCGGT 2 cut(s) 8, 188
AgsI TTSAA 3 cut(s) 87, 539, 932
AleI CACNNNNGTG 1 cut(s) 795
AluBI AGCT 5 cut(s) 112, 131, 223, 363, 407
AluI AGCT 5 cut(s) 112, 131, 223, 363, 407
Alw21I GWGCWC 1 cut(s) 792
Alw26I GTCTC 2 cut(s) 641, 776
Alw44I GTGCAC 1 cut(s) 788
AlwI GGATC 4 cut(s) 148, 663, 888, 948
AlwNI CAGNNNCTG 1 cut(s) 728
AoxI GGCC 3 cut(s) 212, 695, 775
ApaLI GTGCAC 1 cut(s) 788
ApeKI GCWGC 3 cut(s) 223, 226, 463
ApoI RAATTY 3 cut(s) 560, 738, 852
AsiGI ACCGGT 2 cut(s) 8, 188
Asp700I GAANNNNTTC 2 cut(s) 35, 1015
AspS9I GGNCC 3 cut(s) 416, 551, 776
AsuC2I CCSGG 1 cut(s) 146
AvaII GGWCC 2 cut(s) 416, 551
BaeGI GKGCMC 1 cut(s) 792
BalI TGGCCA 1 cut(s) 214
BarI GAAGNNNNNNTAC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 792
BbvI GCAGC 3 cut(s) 210, 213, 475
BccI CCATC 4 cut(s) 223, 427, 445, 542
BcgI CGANNNNNNTGC 2 cut(s) 854, 888
BciVI GTATCC 2 cut(s) 696, 712
BclI TGATCA 1 cut(s) 700
BcnI CCSGG 1 cut(s) 146
BcoDI GTCTC 2 cut(s) 641, 776
BfaI CTAG 2 cut(s) 555, 768
BfmI CTRYAG 1 cut(s) 793
BfuAI ACCTGC 1 cut(s) 791
BfuI GTATCC 2 cut(s) 696, 712
BglII AGATCT 1 cut(s) 985
BisI GCNGC 4 cut(s) 27, 224, 227, 464
BlsI GCNGC 4 cut(s) 28, 225, 228, 465
Bme1390I CCNGG 1 cut(s) 146
Bme18I GGWCC 2 cut(s) 416, 551
BmgT120I GGNCC 3 cut(s) 416, 551, 776
BmrFI CCNGG 1 cut(s) 146
BmsI GCATC 1 cut(s) 474
BplI GAGNNNNNCTC 2 cut(s) 379, 411
BpuEI CTTGAG 1 cut(s) 650
BpuMI CCSGG 1 cut(s) 146
BsaHI GRCGYC 1 cut(s) 374
BsaJI CCNNGG 5 cut(s) 145, 714, 894, 936, 993
BsaWI WCCGGW 2 cut(s) 8, 188
Bsc4I CCNNNNNNNGG 2 cut(s) 704, 773
Bse118I RCCGGY 2 cut(s) 8, 188
Bse1I ACTGG 2 cut(s) 46, 820
Bse3DI GCAATG 1 cut(s) 466
BseDI CCNNGG 5 cut(s) 145, 714, 894, 936, 993
BseGI GGATG 2 cut(s) 65, 213
BseLI CCNNNNNNNGG 2 cut(s) 704, 773
BseMI GCAATG 1 cut(s) 466
BseMII CTCAG 2 cut(s) 375, 410
BseNI ACTGG 2 cut(s) 46, 820
BseRI GAGGAG 1 cut(s) 91
BseSI GKGCMC 1 cut(s) 792
BseXI GCAGC 3 cut(s) 210, 213, 475
BsgI GTGCAG 1 cut(s) 819
Bsh1236I CGCG 3 cut(s) 29, 52, 995
Bsh1285I CGRYCG 2 cut(s) 9, 174
BshFI GGCC 3 cut(s) 214, 697, 777
BshTI ACCGGT 2 cut(s) 8, 188
BsiEI CGRYCG 2 cut(s) 9, 174
BsiHKAI GWGCWC 1 cut(s) 792
BsiSI CCGG 3 cut(s) 9, 145, 189
BslFI GGGAC 2 cut(s) 542, 1012
BslI CCNNNNNNNGG 2 cut(s) 704, 773
BsmAI GTCTC 2 cut(s) 641, 776
BsmFI GGGAC 2 cut(s) 542, 1012
BsmI GAATGC 1 cut(s) 361
BsnI GGCC 3 cut(s) 214, 697, 777
Bsp1286I GDGCHC 1 cut(s) 792
Bsp143I GATC 8 cut(s) 106, 153, 171, 655, 700, 880, 940, 985
Bsp19I CCATGG 1 cut(s) 936
BspACI CCGC 6 cut(s) 24, 27, 69, 525, 993, 995
BspANI GGCC 3 cut(s) 214, 697, 777
BspCNI CTCAG 2 cut(s) 376, 409
BspFNI CGCG 3 cut(s) 29, 52, 995
BspHI TCATGA 1 cut(s) 178
BspMAI CTGCAG 1 cut(s) 797
BspMI ACCTGC 1 cut(s) 791
BspPI GGATC 4 cut(s) 148, 663, 888, 948
BsrDI GCAATG 1 cut(s) 466
BsrFI RCCGGY 2 cut(s) 8, 188
BsrI ACTGG 2 cut(s) 46, 820
BssAI RCCGGY 2 cut(s) 8, 188
BssECI CCNNGG 5 cut(s) 145, 714, 894, 936, 993
BssMI GATC 8 cut(s) 106, 153, 171, 655, 700, 880, 940, 985
BssNI GRCGYC 1 cut(s) 374
BssT1I CCWWGG 2 cut(s) 714, 936
Bst4CI ACNGT 8 cut(s) 236, 241, 254, 281, 517, 724, 827, 895
Bst6I CTCTTC 1 cut(s) 25
BstACI GRCGYC 1 cut(s) 374
BstC8I GCNNGC 3 cut(s) 361, 862, 911
BstDEI CTNAG 2 cut(s) 384, 396
BstDSI CCRYGG 3 cut(s) 894, 936, 993
BstF5I GGATG 2 cut(s) 65, 213
BstFNI CGCG 3 cut(s) 29, 52, 995
BstKTI GATC 8 cut(s) 109, 156, 174, 658, 703, 883, 943, 988
BstMAI GTCTC 2 cut(s) 641, 776
BstMBI GATC 8 cut(s) 106, 153, 171, 655, 700, 880, 940, 985
BstMCI CGRYCG 2 cut(s) 9, 174
BstMWI GCNNNNNNNGC 2 cut(s) 220, 915
BstSCI CCNGG 1 cut(s) 144
BstSFI CTRYAG 1 cut(s) 793
BstSLI GKGCMC 1 cut(s) 792
BstUI CGCG 3 cut(s) 29, 52, 995
BstV1I GCAGC 3 cut(s) 210, 213, 475
BstX2I RGATCY 3 cut(s) 153, 880, 985
BstYI RGATCY 3 cut(s) 153, 880, 985
BsuI GTATCC 2 cut(s) 696, 712
BsuRI GGCC 3 cut(s) 214, 697, 777
BtgI CCRYGG 3 cut(s) 894, 936, 993
BtsCI GGATG 2 cut(s) 65, 213
BtsI GCAGTG 3 cut(s) 118, 790, 802
BtsIMutI CAGTG 8 cut(s) 39, 118, 246, 259, 286, 729, 790, 802
BveI ACCTGC 1 cut(s) 791
Cac8I GCNNGC 3 cut(s) 361, 862, 911
CaiI CAGNNNCTG 1 cut(s) 728
CciI TCATGA 1 cut(s) 178
Cfr10I RCCGGY 2 cut(s) 8, 188
Cfr13I GGNCC 3 cut(s) 416, 551, 776
Cfr42I CCGCGG 1 cut(s) 996
CseI GACGC 1 cut(s) 58
Csp6I GTAC 2 cut(s) 237, 761
CspAI ACCGGT 2 cut(s) 8, 188
CviAII CATG 6 cut(s) 179, 324, 664, 704, 925, 937
CviQI GTAC 2 cut(s) 237, 761
DdeI CTNAG 2 cut(s) 384, 396
DpnI GATC 8 cut(s) 108, 155, 173, 657, 702, 882, 942, 987
DpnII GATC 8 cut(s) 106, 153, 171, 655, 700, 880, 940, 985
DrdI GACNNNNNNGTC 1 cut(s) 379
DseDI GACNNNNNNGTC 1 cut(s) 379
EaeI YGGCCR 1 cut(s) 212
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
EciI GGCGGA 1 cut(s) 13
Eco130I CCWWGG 2 cut(s) 714, 936
Eco47I GGWCC 2 cut(s) 416, 551
EcoO109I RGGNCCY 1 cut(s) 416
EcoRI GAATTC 1 cut(s) 852
EcoT14I CCWWGG 2 cut(s) 714, 936
ErhI CCWWGG 2 cut(s) 714, 936
FaeI CATG 6 cut(s) 182, 327, 667, 707, 928, 940
FaqI GGGAC 2 cut(s) 542, 1012
FatI CATG 6 cut(s) 178, 323, 663, 703, 924, 936
FauI CCCGC 2 cut(s) 518, 988
FbaI TGATCA 1 cut(s) 700
Fnu4HI GCNGC 4 cut(s) 27, 224, 227, 464
FokI GGATG 2 cut(s) 52, 220
Fsp4HI GCNGC 4 cut(s) 27, 224, 227, 464
FspBI CTAG 2 cut(s) 555, 768
GluI GCNGC 4 cut(s) 27, 224, 227, 464
HaeIII GGCC 3 cut(s) 214, 697, 777
HapII CCGG 3 cut(s) 9, 145, 189
HgaI GACGC 1 cut(s) 58
Hin1I GRCGYC 1 cut(s) 374
Hin1II CATG 6 cut(s) 182, 327, 667, 707, 928, 940
HincII GTYRAC 1 cut(s) 637
HindII GTYRAC 1 cut(s) 637
HindIII AAGCTT 1 cut(s) 361
HinfI GANTC 7 cut(s) 31, 74, 167, 319, 332, 380, 625
HpaI GTTAAC 1 cut(s) 637
HpaII CCGG 3 cut(s) 9, 145, 189
Hpy166II GTNNAC 4 cut(s) 186, 194, 637, 790
Hpy188I TCNGA 5 cut(s) 106, 220, 318, 379, 385
Hpy188III TCNNGA 5 cut(s) 164, 179, 539, 629, 689
Hpy8I GTNNAC 4 cut(s) 186, 194, 637, 790
Hpy99I CGWCG 2 cut(s) 52, 379
HpyAV CCTTC 1 cut(s) 93
HpyCH4III ACNGT 8 cut(s) 236, 241, 254, 281, 517, 724, 827, 895
HpyCH4IV ACGT 1 cut(s) 374
HpyCH4V TGCA 6 cut(s) 341, 359, 676, 790, 795, 800
HpyF10VI GCNNNNNNNGC 2 cut(s) 220, 915
HpyF3I CTNAG 2 cut(s) 384, 396
HpySE526I ACGT 1 cut(s) 374
Hsp92I GRCGYC 1 cut(s) 374
Hsp92II CATG 6 cut(s) 182, 327, 667, 707, 928, 940
Ksp22I TGATCA 1 cut(s) 700
KspAI GTTAAC 1 cut(s) 637
KspI CCGCGG 1 cut(s) 996
Kzo9I GATC 8 cut(s) 106, 153, 171, 655, 700, 880, 940, 985
LmnI GCTCC 1 cut(s) 220
Lsp1109I GCAGC 3 cut(s) 210, 213, 475
LweI GCATC 1 cut(s) 474
MaeI CTAG 2 cut(s) 555, 768
MaeII ACGT 1 cut(s) 374
MaeIII GTNAC 1 cut(s) 618
MalI GATC 8 cut(s) 108, 155, 173, 657, 702, 882, 942, 987
MboI GATC 8 cut(s) 106, 153, 171, 655, 700, 880, 940, 985
MboII GAAGA 4 cut(s) 12, 557, 822, 995
MflI RGATCY 3 cut(s) 153, 880, 985
MhlI GDGCHC 1 cut(s) 792
MlsI TGGCCA 1 cut(s) 214
MluCI AATT 5 cut(s) 366, 560, 738, 852, 977
MluI ACGCGT 1 cut(s) 50
MluNI TGGCCA 1 cut(s) 214
MlyI GAGTC 3 cut(s) 161, 326, 389
MmeI TCCRAC 2 cut(s) 357, 858
MnlI CCTC 6 cut(s) 28, 90, 112, 430, 625, 646
Mox20I TGGCCA 1 cut(s) 214
MroXI GAANNNNTTC 2 cut(s) 35, 1015
MscI TGGCCA 1 cut(s) 214
MseI TTAA 4 cut(s) 365, 369, 519, 636
MslI CAYNNNNRTG 3 cut(s) 482, 795, 923
Msp20I TGGCCA 1 cut(s) 214
MspA1I CMGCKG 2 cut(s) 71, 995
MspI CCGG 3 cut(s) 9, 145, 189
MspR9I CCNGG 1 cut(s) 146
Mva1269I GAATGC 1 cut(s) 361
MvnI CGCG 3 cut(s) 29, 52, 995
MwoI GCNNNNNNNGC 2 cut(s) 220, 915
NciI CCSGG 1 cut(s) 146
NcoI CCATGG 1 cut(s) 936
NdeII GATC 8 cut(s) 106, 153, 171, 655, 700, 880, 940, 985
NlaIII CATG 6 cut(s) 182, 327, 667, 707, 928, 940
NmeAIII GCCGAG 2 cut(s) 114, 753
OliI CACNNNNGTG 1 cut(s) 795
PacI TTAATTAA 1 cut(s) 369
PagI TCATGA 1 cut(s) 178
PctI GAATGC 1 cut(s) 361
PdmI GAANNNNTTC 2 cut(s) 35, 1015
PfeI GAWTC 4 cut(s) 31, 74, 319, 625
PinAI ACCGGT 2 cut(s) 8, 188
PkrI GCNGC 4 cut(s) 28, 225, 228, 465
Ple19I CGATCG 1 cut(s) 174
PleI GAGTC 3 cut(s) 161, 326, 388
PpsI GAGTC 3 cut(s) 161, 326, 388
PpuMI RGGWCCY 1 cut(s) 416
Psp5II RGGWCCY 1 cut(s) 416
PspPI GGNCC 3 cut(s) 416, 551, 776
PspPPI RGGWCCY 1 cut(s) 416
PstI CTGCAG 1 cut(s) 797
PstNI CAGNNNCTG 1 cut(s) 728
PsuI RGATCY 3 cut(s) 153, 880, 985
PvuI CGATCG 1 cut(s) 174
RsaI GTAC 2 cut(s) 238, 762
RsaNI GTAC 2 cut(s) 237, 761
RseI CAYNNNNRTG 3 cut(s) 482, 795, 923
SacII CCGCGG 1 cut(s) 996
SaqAI TTAA 4 cut(s) 365, 369, 519, 636
SatI GCNGC 4 cut(s) 27, 224, 227, 464
Sau3AI GATC 8 cut(s) 106, 153, 171, 655, 700, 880, 940, 985
Sau96I GGNCC 3 cut(s) 416, 551, 776
SchI GAGTC 3 cut(s) 161, 326, 389
ScrFI CCNGG 1 cut(s) 146
SduI GDGCHC 1 cut(s) 792
SfaNI GCATC 1 cut(s) 474
SfcI CTRYAG 1 cut(s) 793
Sfr303I CCGCGG 1 cut(s) 996
SgrBI CCGCGG 1 cut(s) 996
SinI GGWCC 2 cut(s) 416, 551
SmiMI CAYNNNNRTG 3 cut(s) 482, 795, 923
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
Sse9I AATT 5 cut(s) 366, 560, 738, 852, 977
SsiI CCGC 6 cut(s) 24, 27, 69, 525, 993, 995
SspMI CTAG 2 cut(s) 555, 768
StyD4I CCNGG 1 cut(s) 144
StyI CCWWGG 2 cut(s) 714, 936
TaaI ACNGT 8 cut(s) 236, 241, 254, 281, 517, 724, 827, 895
TaiI ACGT 1 cut(s) 377
TaqI TCGA 3 cut(s) 47, 170, 493
TasI AATT 5 cut(s) 366, 560, 738, 852, 977
TatI WGTACW 1 cut(s) 236
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 4 cut(s) 31, 74, 319, 625
Tru1I TTAA 4 cut(s) 365, 369, 519, 636
Tru9I TTAA 4 cut(s) 365, 369, 519, 636
TscAI CASTG 8 cut(s) 46, 125, 246, 259, 286, 729, 797, 802
TseI GCWGC 3 cut(s) 223, 226, 463
TspDTI ATGAA 4 cut(s) 263, 391, 600, 990
TspGWI ACGGA 3 cut(s) 637, 658, 722
TspRI CASTG 8 cut(s) 46, 125, 246, 259, 286, 729, 797, 802
VneI GTGCAC 1 cut(s) 788
VpaK11BI GGWCC 2 cut(s) 416, 551
XapI RAATTY 3 cut(s) 560, 738, 852
XcmI CCANNNNNNNNNTGG 1 cut(s) 721
XmnI GAANNNNTTC 2 cut(s) 35, 1015
XspI CTAG 2 cut(s) 555, 768
ZraI GACGTC 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.