Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8205282.1

Orthogroup ID

OG0001574

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 718

Gene Structure 718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8205282.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 325 bp

ccaccggagaccgagggcgacggcgacggcgatggcctcttctgccgcagaaaaacctctcccttcctttgagttctcggccgattctccgccggcgagactcagactcagccccgatcagtataactactgctcccaggctctcaaattcttcaaagacaaactccagatgcgtcaccagatcaaccaagagttcgctctcttacagggcaagaggatcacagcatctgagatgaagagaagttgcactgtggctctggaccctgtcaatgtcaccaaaaatcgctacaccgatgtcttaccatgtatgcctgagcgagtttcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000188 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006469 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010563 GO:0010605 GO:0010646 GO:0010648 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031347 GO:0031348 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033549 GO:0033550 GO:0033673 GO:0035335 GO:0035556 GO:0036211 GO:0042325 GO:0042326 GO:0042578 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043407 GO:0043408 GO:0043409 GO:0043412 GO:0043549 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045936 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071901 GO:0071944 GO:0080090 GO:0080134 GO:0140096 GO:1901564 GO:1902531 GO:1902532 GO:1990264

KEGG Pathways

Metabolic & Signaling

ko04520 ko04910 ko04931 map04520 map04910 map04931

Pfam Domains

Protein Families

Y_phosphatase

Protein Analysis

108

Amino Acids

12.26

Weight (kDa)

9.72

Isoelectric Point (pI)

67.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71860 AT1G71860 AT1G71860
fragaria_vesca	FvH4_2g12360 FvH4_2g12360 FvH4_2g12360 FvH4_2g12360 FvH4_5g14850 FvH4_5g14850 FvH4_5g14850
malus_domestica	MD05G1039700.v1.1 MD09G1287400.v1.1 MD10G1045300.v1.1
prunus_persica	Prupe.1G402600_v2.0.a1 Prupe.8G052200_v2.0.a1 Prupe.8G052200_v2.0.a1
pyrus_communis	pycom05g03240 pycom10g03170
rosa_chinensis	RchiOBHm_Chr3g0456471 RchiOBHm_Chr6g0272381 RchiOBHm_Chr7g0181531
rosa_laevigata	RLG00000005185 RLG00000013677 RLG00000025303
rosa_multiflora	Rmu_co8205282.1_g000001 Rmu_sc0004621.1_g000033 Rmu_sc0010043.1_g000002 Rmu_sc0023867.1_g000001 Rmu_sc0029422.1_g000002
rosa_roxburghii	Rroxscaffold_3G00271920 Rroxscaffold_6G00422730 Rroxscaffold_7G00196330
rosa_rugosa	Rorug03G0013200 Rorug03G0013300 Rorug06G0068700 Rorug06G0442100
rosa_samantha	Rh3AG073600 Rh3BG075500 Rh3CG075000 Rh3DG076800 Rh6AG184800 Rh6BG188100 Rh6DG177800 Rh7AG044200 Rh7BG043300 Rh7CG045100 Rh7DG043800
rosa_wichuraiana	Rw3G006310 Rw6G015980 Rw7G003660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	46, 90
AclWI	GGATC	1 cut(s)	225
AcoI	YGGCCR	1 cut(s)	79
AcsI	RAATTY	1 cut(s)	147
AgsI	TTSAA	1 cut(s)	155
AjnI	CCWGG	1 cut(s)	136
Alw26I	GTCTC	2 cut(s)	2, 92
AlwI	GGATC	1 cut(s)	225
AlwNI	CAGNNNCTG	1 cut(s)	228
AoxI	GGCC	2 cut(s)	34, 79
ApoI	RAATTY	1 cut(s)	147
AspS9I	GGNCC	1 cut(s)	260
AsuHPI	GGTGA	2 cut(s)	168, 266
AvaII	GGWCC	1 cut(s)	260
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	2 cut(s)	37, 43
BciT130I	CCWGG	1 cut(s)	138
BcoDI	GTCTC	2 cut(s)	2, 92
BisI	GCNGC	1 cut(s)	46
BlsI	GCNGC	1 cut(s)	47
Bme1390I	CCNGG	1 cut(s)	138
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	138
BmsI	GCATC	2 cut(s)	160, 234
BpmI	CTGGAG	1 cut(s)	150
Bpu10I	CCTNAGC	1 cut(s)	313
BsaI	GGTCTC	1 cut(s)	2
BsaJI	CCNNGG	2 cut(s)	12, 136
BsaWI	WCCGGW	1 cut(s)	4
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bse118I	RCCGGY	1 cut(s)	92
BseBI	CCWGG	1 cut(s)	138
BseDI	CCNNGG	2 cut(s)	12, 136
BseMII	CTCAG	4 cut(s)	116, 122, 220, 304
BseX3I	CGGCCG	1 cut(s)	79
Bsh1285I	CGRYCG	1 cut(s)	82
BshFI	GGCC	2 cut(s)	36, 81
BsiEI	CGRYCG	1 cut(s)	82
BsiSI	CCGG	2 cut(s)	5, 93
BsmAI	GTCTC	2 cut(s)	2, 92
BsnI	GGCC	2 cut(s)	36, 81
Bso31I	GGTCTC	1 cut(s)	2
Bsp143I	GATC	3 cut(s)	116, 181, 217
BspACI	CCGC	2 cut(s)	46, 90
BspANI	GGCC	2 cut(s)	36, 81
BspCNI	CTCAG	4 cut(s)	115, 121, 221, 305
BspLI	GGNNCC	1 cut(s)	262
BspPI	GGATC	1 cut(s)	225
BspTNI	GGTCTC	1 cut(s)	2
BsrFI	RCCGGY	1 cut(s)	92
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	2 cut(s)	12, 136
BssMI	GATC	3 cut(s)	116, 181, 217
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	251
Bst6I	CTCTTC	2 cut(s)	44, 231
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	4 cut(s)	102, 108, 229, 313
BstKTI	GATC	3 cut(s)	119, 184, 220
BstMAI	GTCTC	2 cut(s)	2, 92
BstMBI	GATC	3 cut(s)	116, 181, 217
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstNI	CCWGG	1 cut(s)	138
BstSCI	CCNGG	1 cut(s)	136
BstZI	CGGCCG	1 cut(s)	79
BsuRI	GGCC	2 cut(s)	36, 81
BtgZI	GCGATG	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	247
Cac8I	GCNNGC	1 cut(s)	94
CaiI	CAGNNNCTG	1 cut(s)	228
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	260
CseI	GACGC	1 cut(s)	162
CviAII	CATG	1 cut(s)	304
CviJI	RGCY	5 cut(s)	36, 81, 112, 141, 255
CviKI_1	RGCY	5 cut(s)	36, 81, 112, 141, 255
DdeI	CTNAG	4 cut(s)	102, 108, 229, 313
DpnI	GATC	3 cut(s)	118, 183, 219
DpnII	GATC	3 cut(s)	116, 181, 217
EaeI	YGGCCR	1 cut(s)	79
EagI	CGGCCG	1 cut(s)	79
Eam1104I	CTCTTC	2 cut(s)	44, 231
EarI	CTCTTC	2 cut(s)	44, 231
EciI	GGCGGA	1 cut(s)	79
EclXI	CGGCCG	1 cut(s)	79
Eco31I	GGTCTC	1 cut(s)	2
Eco47I	GGWCC	1 cut(s)	260
Eco52I	CGGCCG	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	136
FaeI	CATG	1 cut(s)	307
FaiI	YATR	3 cut(s)	124, 305, 309
FatI	CATG	1 cut(s)	303
Fnu4HI	GCNGC	1 cut(s)	46
Fsp4HI	GCNGC	1 cut(s)	46
GluI	GCNGC	1 cut(s)	46
GsuI	CTGGAG	1 cut(s)	150
HaeIII	GGCC	2 cut(s)	36, 81
HapII	CCGG	2 cut(s)	5, 93
HgaI	GACGC	1 cut(s)	162
Hin1II	CATG	1 cut(s)	307
HinfI	GANTC	3 cut(s)	84, 100, 106
HpaII	CCGG	2 cut(s)	5, 93
HphI	GGTGA	2 cut(s)	168, 266
Hpy188I	TCNGA	2 cut(s)	105, 230
Hpy188III	TCNNGA	2 cut(s)	167, 258
Hpy99I	CGWCG	2 cut(s)	23, 29
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4V	TGCA	1 cut(s)	247
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	4 cut(s)	102, 108, 229, 313
Hsp92II	CATG	1 cut(s)	307
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Kzo9I	GATC	3 cut(s)	116, 181, 217
LmnI	GCTCC	1 cut(s)	138
LpnPI	CCDG	9 cut(s)	18, 106, 123, 150, 180, 192, 192, 243, 277
LweI	GCATC	2 cut(s)	160, 234
MaeIII	GTNAC	2 cut(s)	174, 272
MalI	GATC	3 cut(s)	118, 183, 219
MboI	GATC	3 cut(s)	116, 181, 217
MboII	GAAGA	3 cut(s)	31, 143, 248
MluCI	AATT	1 cut(s)	147
MlyI	GAGTC	2 cut(s)	94, 100
MnlI	CCTC	4 cut(s)	7, 47, 67, 208
MreI	CGCCGGCG	1 cut(s)	92
MroNI	GCCGGC	1 cut(s)	92
MspI	CCGG	2 cut(s)	5, 93
MspR9I	CCNGG	1 cut(s)	138
MvaI	CCWGG	1 cut(s)	138
MwoI	GCNNNNNNNGC	1 cut(s)	42
NaeI	GCCGGC	1 cut(s)	94
NdeII	GATC	3 cut(s)	116, 181, 217
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	1 cut(s)	307
NlaIV	GGNNCC	1 cut(s)	262
NmeAIII	GCCGAG	1 cut(s)	57
NmuCI	GTSAC	2 cut(s)	174, 272
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PdiI	GCCGGC	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	84
PflFI	GACNNNGTC	1 cut(s)	264
PkrI	GCNGC	1 cut(s)	47
PleI	GAGTC	2 cut(s)	94, 100
PpsI	GAGTC	2 cut(s)	94, 100
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
PspN4I	GGNNCC	1 cut(s)	262
PspPI	GGNCC	1 cut(s)	260
PstNI	CAGNNNCTG	1 cut(s)	228
PsyI	GACNNNGTC	1 cut(s)	264
SatI	GCNGC	1 cut(s)	46
Sau3AI	GATC	3 cut(s)	116, 181, 217
Sau96I	GGNCC	1 cut(s)	260
SchI	GAGTC	2 cut(s)	94, 100
ScrFI	CCNGG	1 cut(s)	138
SetI	ASST	1 cut(s)	59
SfaNI	GCATC	2 cut(s)	160, 234
SgrAI	CRCCGGYG	1 cut(s)	92
SinI	GGWCC	1 cut(s)	260
Sse9I	AATT	1 cut(s)	147
SsiI	CCGC	2 cut(s)	46, 90
StyD4I	CCNGG	1 cut(s)	136
TaaI	ACNGT	1 cut(s)	251
TaqII	GACCGA	1 cut(s)	26
TasI	AATT	1 cut(s)	147
TauI	GCSGC	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	84
TscAI	CASTG	1 cut(s)	254
TseFI	GTSAC	2 cut(s)	174, 272
Tsp45I	GTSAC	2 cut(s)	174, 272
TspDTI	ATGAA	1 cut(s)	249
TspRI	CASTG	1 cut(s)	254
Tth111I	GACNNNGTC	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.