RchiOBHm_Chr6g0272381

Protein-tyrosine-phosphatase PTP1-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
32638738 .. 32642741
4004 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24436

Sequence Viewer

Length: 1038 bp
ATGGCCTCTTCTGCCGCAGAAAAACCACTCCCTTCCTTTGAGTTCTCGGCCGATTCTCCGCCGGCGAGACTGAAACTCAGCCCCGATCAGTATAACTACTGCTCCCAGGCTCTCAAATTCTTCAAAGACAAACTCCAGATGCCTCACCAGATCAACCAAGAGTTCGCTCTCTTACAGGGCAAGAGGATCACAGCATCTGAGATGAAGAGAAGTTGCACTGTGGCTCTGGACCCTGTCAATGTCACCAAAAATCGCTACACCGATGTCTTACCATTTGATCAAAATAGGGTCGTTCTCAAGTCTTGTAAAGATTACAGACCTGAAGCAAGGGGCTACATCAATGGCAGCTACATCTCGGCTTGTTCCTCTGAAAGCATTTCTAGGTTTATAGCTACACAAGGTCCACTTCCGCATACCTATGAGGATTTCTGGGAGATGGTACTTGAGAACCATTGCCCTGTAGTGGTCATGCTTACTCGCTTAGTCGACTATTACAAGATGGTCAAGTGTGGAGATTATTTTCAGGCAGAAGATGGTCCTAGAGAATTCGGTAATATAACCATAGCCACCAAGTGGACAAGAACCACTTGCACTTCATTAGTATTGCGCCTTCTGGAGGTCAGCAGTAAGGAGTTAGAGGAACCATCAATGTCTGTGCTGCATATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCCACGGATACAATTGCTGTTCGTGAAATATTGAAGTCAATATATCAAGTTCCACCCAACCTTGGCCCAGTAGTGGTGCACTGCAGTGCAGGTATTGGGAGGACTGGAACATACTGCACAATTCATAATACAATTCAGAGAATTCTTTCTGGGGACATGTCTGCTTTAGATCTTGCTAATACAATAACCACGTTTAGGACTGAGCGTATTGGAATGGTGCAGACACTGGAGCAATATTTTTTCTGTTATTCTGCAATCATTGATGAATTGGAAGACCTCATGGCGGATCTGAATGGTGGAAGGTGCTCAAAAGAGGTCAATAACAGTAAGAGCTCAAAGTAG

Protein Analysis

345

Amino Acids

38.91

Weight (kDa)

6.02

Isoelectric Point (pI)

45.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Y_phosphatase PF00102 80 - 319 9.1e-71 Protein-tyrosine phosphatase
Tc-R-P PF22785 211 - 270 2e-06 Polymorphic toxin system, DSP-PTPase phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 776
AccB7I CCANNNNNTGG 1 cut(s) 573
AccI GTMKAC 1 cut(s) 486
AciI CCGC 4 cut(s) 15, 59, 410, 980
AclWI GGATC 2 cut(s) 194, 990
AcoI YGGCCR 1 cut(s) 48
AcsI RAATTY 3 cut(s) 116, 545, 837
AcuI CTGAAG 1 cut(s) 342
AdeI CACNNNGTG 1 cut(s) 573
AfaI GTAC 1 cut(s) 441
AfiI CCNNNNNNNGG 8 cut(s) 463, 573, 616, 689, 758, 769, 891, 979
AflIII ACRYGT 1 cut(s) 852
AgsI TTSAA 2 cut(s) 124, 730
AjnI CCWGG 1 cut(s) 105
AleI CACNNNNGTG 1 cut(s) 780
AluBI AGCT 3 cut(s) 348, 392, 1029
AluI AGCT 3 cut(s) 348, 392, 1029
Alw21I GWGCWC 3 cut(s) 777, 1004, 1031
Alw26I GTCTC 1 cut(s) 61
Alw44I GTGCAC 1 cut(s) 773
AlwI GGATC 2 cut(s) 194, 990
AlwNI CAGNNNCTG 2 cut(s) 197, 922
AoxI GGCC 4 cut(s) 3, 48, 680, 760
ApaLI GTGCAC 1 cut(s) 773
ApeKI GCWGC 2 cut(s) 345, 658
ApoI RAATTY 3 cut(s) 116, 545, 837
Asp700I GAANNNNTTC 1 cut(s) 841
AspLEI GCGC 1 cut(s) 609
AspS9I GGNCC 4 cut(s) 229, 401, 536, 761
AsuHPI GGTGA 2 cut(s) 137, 235
AvaII GGWCC 3 cut(s) 229, 401, 536
BaeGI GKGCMC 1 cut(s) 777
BanII GRGCYC 1 cut(s) 1031
BarI GAAGNNNNNNTAC 2 cut(s) 594, 626
BbsI GAAGAC 1 cut(s) 975
Bbv12I GWGCWC 3 cut(s) 777, 1004, 1031
BbvI GCAGC 2 cut(s) 357, 645
BccI CCATC 4 cut(s) 430, 493, 527, 652
BciT130I CCWGG 1 cut(s) 107
BciVI GTATCC 2 cut(s) 681, 697
BclI TGATCA 1 cut(s) 277
BcoDI GTCTC 1 cut(s) 61
BfaI CTAG 2 cut(s) 381, 540
BfmI CTRYAG 2 cut(s) 459, 778
BfuAI ACCTGC 1 cut(s) 776
BfuI GTATCC 2 cut(s) 681, 697
BglII AGATCT 1 cut(s) 865
BisI GCNGC 3 cut(s) 15, 346, 659
BlsI GCNGC 3 cut(s) 16, 347, 660
Bme1390I CCNGG 1 cut(s) 107
Bme18I GGWCC 3 cut(s) 229, 401, 536
BmgT120I GGNCC 4 cut(s) 229, 401, 536, 761
BmiI GGNNCC 2 cut(s) 231, 642
BmrFI CCNGG 1 cut(s) 107
BmrI ACTGGG 1 cut(s) 758
BmsI GCATC 2 cut(s) 129, 203
BmuI ACTGGG 1 cut(s) 758
BpiI GAAGAC 1 cut(s) 975
BpmI CTGGAG 3 cut(s) 119, 635, 944
BpuEI CTTGAG 2 cut(s) 281, 464
BsaJI CCNNGG 4 cut(s) 105, 688, 699, 757
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 8 cut(s) 463, 573, 616, 689, 758, 769, 891, 979
Bse118I RCCGGY 1 cut(s) 61
Bse1I ACTGG 3 cut(s) 764, 805, 927
Bse3DI GCAATG 1 cut(s) 451
BseBI CCWGG 1 cut(s) 107
BseDI CCNNGG 4 cut(s) 105, 688, 699, 757
BseLI CCNNNNNNNGG 8 cut(s) 463, 573, 616, 689, 758, 769, 891, 979
BseMI GCAATG 1 cut(s) 451
BseMII CTCAG 3 cut(s) 91, 189, 888
BseNI ACTGG 3 cut(s) 764, 805, 927
BseSI GKGCMC 1 cut(s) 777
BseX3I CGGCCG 1 cut(s) 48
BseXI GCAGC 2 cut(s) 357, 645
BsgI GTGCAG 3 cut(s) 796, 804, 935
Bsh1285I CGRYCG 1 cut(s) 51
BshFI GGCC 4 cut(s) 5, 50, 682, 762
BsiEI CGRYCG 1 cut(s) 51
BsiHKAI GWGCWC 3 cut(s) 777, 1004, 1031
BsiSI CCGG 1 cut(s) 62
BslFI GGGAC 1 cut(s) 863
BslI CCNNNNNNNGG 8 cut(s) 463, 573, 616, 689, 758, 769, 891, 979
BsmAI GTCTC 1 cut(s) 61
BsmFI GGGAC 1 cut(s) 863
BsnI GGCC 4 cut(s) 5, 50, 682, 762
Bsp1286I GDGCHC 3 cut(s) 777, 1004, 1031
Bsp143I GATC 6 cut(s) 85, 150, 186, 277, 865, 982
Bsp19I CCATGG 1 cut(s) 688
BspACI CCGC 4 cut(s) 15, 59, 410, 980
BspANI GGCC 4 cut(s) 5, 50, 682, 762
BspCNI CTCAG 3 cut(s) 90, 190, 889
BspLI GGNNCC 2 cut(s) 231, 642
BspMAI CTGCAG 1 cut(s) 782
BspMI ACCTGC 1 cut(s) 776
BspPI GGATC 2 cut(s) 194, 990
BsrDI GCAATG 1 cut(s) 451
BsrFI RCCGGY 1 cut(s) 61
BsrI ACTGG 3 cut(s) 764, 805, 927
BssAI RCCGGY 1 cut(s) 61
BssECI CCNNGG 4 cut(s) 105, 688, 699, 757
BssMI GATC 6 cut(s) 85, 150, 186, 277, 865, 982
BssT1I CCWWGG 2 cut(s) 688, 757
Bst2UI CCWGG 1 cut(s) 107
Bst4CI ACNGT 2 cut(s) 220, 1022
Bst6I CTCTTC 2 cut(s) 13, 200
BstC8I GCNNGC 1 cut(s) 63
BstDEI CTNAG 4 cut(s) 77, 198, 481, 897
BstDSI CCRYGG 2 cut(s) 688, 699
BstENI CCTNNNNNAGG 1 cut(s) 614
BstHHI GCGC 1 cut(s) 609
BstKTI GATC 6 cut(s) 88, 153, 189, 280, 868, 985
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 6 cut(s) 85, 150, 186, 277, 865, 982
BstMCI CGRYCG 1 cut(s) 51
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 107
BstNSI RCATGY 1 cut(s) 856
BstSCI CCNGG 1 cut(s) 105
BstSFI CTRYAG 2 cut(s) 459, 778
BstSLI GKGCMC 1 cut(s) 777
BstV1I GCAGC 2 cut(s) 357, 645
BstV2I GAAGAC 1 cut(s) 975
BstX2I RGATCY 2 cut(s) 865, 982
BstYI RGATCY 2 cut(s) 865, 982
BstZI CGGCCG 1 cut(s) 48
BsuI GTATCC 2 cut(s) 681, 697
BsuRI GGCC 4 cut(s) 5, 50, 682, 762
BtgI CCRYGG 2 cut(s) 688, 699
BtsI GCAGTG 2 cut(s) 775, 787
BtsIMutI CAGTG 4 cut(s) 216, 775, 787, 920
BveI ACCTGC 1 cut(s) 776
Cac8I GCNNGC 1 cut(s) 63
CaiI CAGNNNCTG 2 cut(s) 197, 922
CfoI GCGC 1 cut(s) 609
Cfr10I RCCGGY 1 cut(s) 61
Cfr13I GGNCC 4 cut(s) 229, 401, 536, 761
Csp6I GTAC 1 cut(s) 440
CviAII CATG 4 cut(s) 469, 689, 853, 976
CviQI GTAC 1 cut(s) 440
DdeI CTNAG 4 cut(s) 77, 198, 481, 897
DpnI GATC 6 cut(s) 87, 152, 188, 279, 867, 984
DpnII GATC 6 cut(s) 85, 150, 186, 277, 865, 982
DraIII CACNNNGTG 1 cut(s) 573
EaeI YGGCCR 1 cut(s) 48
EagI CGGCCG 1 cut(s) 48
Eam1104I CTCTTC 2 cut(s) 13, 200
EarI CTCTTC 2 cut(s) 13, 200
EciI GGCGGA 2 cut(s) 48, 995
Ecl136II GAGCTC 1 cut(s) 1029
EclXI CGGCCG 1 cut(s) 48
Eco130I CCWWGG 2 cut(s) 688, 757
Eco24I GRGCYC 1 cut(s) 1031
Eco47I GGWCC 3 cut(s) 229, 401, 536
Eco52I CGGCCG 1 cut(s) 48
Eco53kI GAGCTC 1 cut(s) 1029
Eco57I CTGAAG 1 cut(s) 342
EcoICRI GAGCTC 1 cut(s) 1029
EcoNI CCTNNNNNAGG 1 cut(s) 614
EcoRI GAATTC 2 cut(s) 545, 837
EcoRII CCWGG 1 cut(s) 105
EcoT14I CCWWGG 2 cut(s) 688, 757
EcoT38I GRGCYC 1 cut(s) 1031
ErhI CCWWGG 2 cut(s) 688, 757
FaeI CATG 4 cut(s) 472, 692, 856, 979
FalI AAGNNNNNCTT 4 cut(s) 390, 422, 571, 603
FaqI GGGAC 1 cut(s) 863
FatI CATG 4 cut(s) 468, 688, 852, 975
FbaI TGATCA 1 cut(s) 277
FblI GTMKAC 1 cut(s) 486
Fnu4HI GCNGC 3 cut(s) 15, 346, 659
FriOI GRGCYC 1 cut(s) 1031
Fsp4HI GCNGC 3 cut(s) 15, 346, 659
FspBI CTAG 2 cut(s) 381, 540
GlaI GCGC 1 cut(s) 608
GluI GCNGC 3 cut(s) 15, 346, 659
GsuI CTGGAG 3 cut(s) 119, 635, 944
HaeIII GGCC 4 cut(s) 5, 50, 682, 762
HapII CCGG 1 cut(s) 62
HhaI GCGC 1 cut(s) 609
Hin1II CATG 4 cut(s) 472, 692, 856, 979
Hin6I GCGC 1 cut(s) 607
HinP1I GCGC 1 cut(s) 607
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HinfI GANTC 1 cut(s) 53
HpaII CCGG 1 cut(s) 62
HphI GGTGA 2 cut(s) 137, 235
Hpy166II GTNNAC 4 cut(s) 404, 487, 576, 775
Hpy188I TCNGA 4 cut(s) 199, 370, 834, 987
Hpy188III TCNNGA 5 cut(s) 136, 227, 614, 674, 719
Hpy8I GTNNAC 4 cut(s) 404, 487, 576, 775
HpyAV CCTTC 3 cut(s) 42, 620, 990
HpyCH4III ACNGT 2 cut(s) 220, 1022
HpyCH4IV ACGT 1 cut(s) 887
HpyCH4V TGCA 9 cut(s) 216, 591, 661, 775, 780, 785, 813, 916, 950
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 4 cut(s) 77, 198, 481, 897
HpySE526I ACGT 1 cut(s) 887
Hsp92II CATG 4 cut(s) 472, 692, 856, 979
HspAI GCGC 1 cut(s) 607
KroI GCCGGC 1 cut(s) 61
KroNI GCCGGC 1 cut(s) 63
Ksp22I TGATCA 1 cut(s) 277
Kzo9I GATC 6 cut(s) 85, 150, 186, 277, 865, 982
LmnI GCTCC 2 cut(s) 107, 925
Lsp1109I GCAGC 2 cut(s) 357, 645
LweI GCATC 2 cut(s) 129, 203
MaeI CTAG 2 cut(s) 381, 540
MaeII ACGT 1 cut(s) 887
MaeIII GTNAC 1 cut(s) 241
MalI GATC 6 cut(s) 87, 152, 188, 279, 867, 984
MboI GATC 6 cut(s) 85, 150, 186, 277, 865, 982
MboII GAAGA 4 cut(s) 112, 217, 542, 980
MfeI CAATTG 1 cut(s) 708
MflI RGATCY 2 cut(s) 865, 982
MhlI GDGCHC 3 cut(s) 777, 1004, 1031
MluCI AATT 7 cut(s) 116, 545, 708, 816, 828, 837, 962
MreI CGCCGGCG 1 cut(s) 61
MroNI GCCGGC 1 cut(s) 61
MroXI GAANNNNTTC 1 cut(s) 841
MslI CAYNNNNRTG 2 cut(s) 417, 780
MspI CCGG 1 cut(s) 62
MspR9I CCNGG 1 cut(s) 107
MunI CAATTG 1 cut(s) 708
MvaI CCWGG 1 cut(s) 107
MwoI GCNNNNNNNGC 1 cut(s) 11
NaeI GCCGGC 1 cut(s) 63
NcoI CCATGG 1 cut(s) 688
NdeII GATC 6 cut(s) 85, 150, 186, 277, 865, 982
NgoMIV GCCGGC 1 cut(s) 61
NlaIII CATG 4 cut(s) 472, 692, 856, 979
NlaIV GGNNCC 2 cut(s) 231, 642
NmeAIII GCCGAG 2 cut(s) 26, 335
NmuCI GTSAC 1 cut(s) 241
NspI RCATGY 1 cut(s) 856
OliI CACNNNNGTG 1 cut(s) 780
PciI ACATGT 1 cut(s) 852
PdiI GCCGGC 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 841
PfeI GAWTC 1 cut(s) 53
PflFI GACNNNGTC 1 cut(s) 233
PflMI CCANNNNNTGG 1 cut(s) 573
PkrI GCNGC 3 cut(s) 16, 347, 660
PscI ACATGT 1 cut(s) 852
Psp124BI GAGCTC 1 cut(s) 1031
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 2 cut(s) 231, 642
PspPI GGNCC 4 cut(s) 229, 401, 536, 761
PstI CTGCAG 1 cut(s) 782
PstNI CAGNNNCTG 2 cut(s) 197, 922
PsuI RGATCY 2 cut(s) 865, 982
PsyI GACNNNGTC 1 cut(s) 233
RsaI GTAC 1 cut(s) 441
RsaNI GTAC 1 cut(s) 440
RseI CAYNNNNRTG 2 cut(s) 417, 780
SacI GAGCTC 1 cut(s) 1031
SalI GTCGAC 1 cut(s) 485
SatI GCNGC 3 cut(s) 15, 346, 659
Sau3AI GATC 6 cut(s) 85, 150, 186, 277, 865, 982
Sau96I GGNCC 4 cut(s) 229, 401, 536, 761
ScrFI CCNGG 1 cut(s) 107
SduI GDGCHC 3 cut(s) 777, 1004, 1031
SfaNI GCATC 2 cut(s) 129, 203
SfcI CTRYAG 2 cut(s) 459, 778
SgrAI CRCCGGYG 1 cut(s) 61
SinI GGWCC 3 cut(s) 229, 401, 536
SmiMI CAYNNNNRTG 2 cut(s) 417, 780
SmlI CTYRAG 2 cut(s) 296, 443
SmoI CTYRAG 2 cut(s) 296, 443
Sse9I AATT 7 cut(s) 116, 545, 708, 816, 828, 837, 962
SsiI CCGC 4 cut(s) 15, 59, 410, 980
SspI AATATT 2 cut(s) 726, 932
SspMI CTAG 2 cut(s) 381, 540
SstI GAGCTC 1 cut(s) 1031
StyD4I CCNGG 1 cut(s) 105
StyI CCWWGG 2 cut(s) 688, 757
TaaI ACNGT 2 cut(s) 220, 1022
TaiI ACGT 1 cut(s) 890
TaqI TCGA 1 cut(s) 486
TasI AATT 7 cut(s) 116, 545, 708, 816, 828, 837, 962
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 1 cut(s) 53
TscAI CASTG 4 cut(s) 223, 782, 787, 927
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 2 cut(s) 345, 658
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 4 cut(s) 218, 585, 809, 975
TspGWI ACGGA 1 cut(s) 716
TspRI CASTG 4 cut(s) 223, 782, 787, 927
Tth111I GACNNNGTC 1 cut(s) 233
Van91I CCANNNNNTGG 1 cut(s) 573
VneI GTGCAC 1 cut(s) 773
VpaK11BI GGWCC 3 cut(s) 229, 401, 536
XagI CCTNNNNNAGG 1 cut(s) 614
XapI RAATTY 3 cut(s) 116, 545, 837
XceI RCATGY 1 cut(s) 856
XmiI GTMKAC 1 cut(s) 486
XmnI GAANNNNTTC 1 cut(s) 841
XspI CTAG 2 cut(s) 381, 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.