FvH4_5g14850

Protein-tyrosine-phosphatase PTP1-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
8425604 .. 8427449
1846 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g14850.t2

Sequence Viewer

Length: 1071 bp
ATGTCTAACGCCAAGAGAACCCAGCTCGATTCCGACGCTGACCACGGCGACGATGACGTCATCAAGTTCCAGAAACTAGGGACTGTGGATTCGTCCCCGTCAGCCGCCGGAGAGCAACCCCTGCCGGAGTATTTTTCTTTCTCTCCGCGGCGGCCGAGAGTGGTCCTCACGCCGGATCAGCACAAGTGGTGCTCCCAGGCTCTCAAGGTGTTCAAAGACAAGCTAGACAAGCCTGGCCTGATCAGCCGGGAGTTTGATGAGCTGTATGAGCGAGCTGTGGTTGAGAAGAGCTGCAATGTGGGTCTCAGCAGTGCCAACTGGAGGAAGAATCGGTACGACGAGATCTTGCCGTTTGATGAAAGCAGGGTTGTTCTGAAGGGGAGGTCTAACAGTAGTGGAGGTGACTACATCAATGCCAGCTTTGTGACGACTAGCGCGTCTCGTTTCATTGCTACGCAAGGTCCACTTCCGAATACTTACGAGGATTTCTGGGAGATGGTGATGCAGTACCGGTGCCCTGTTATCGTTATGCTTACTAGATTGGATAGCGGTAAGTGTGGAGACTATTTTCGAGCAGAGGATGAAAGAGATTTTGGAAATGTGTGTATTGTCACTAAGTGGATTGGAAGTAGTGAGTCTGGTGGGAGTAGTTCTTCGTTAGTGTTGAGGCTTTTGGAGGTGAGGCGTAAGGCGGGGTCAGAGGAGCCGCCTGTGTCTGTGTTGCATATTCACTATCCTGAATGGCCTGACCATGGAGTTCCCGCGGACACGCATGATGTTCGTGATATTTTGAAAGGATTGATATATCAAGTGGAGCCACCGGAGCTTGGCCCGATTGTGGTGCATTGTAGTGCAGGTATTGGGAGGACCGGAACATACTGCACGATTCATGATACAATGAAGAGAATTCTATCTGGGGACATGTCTGCTTTGGATCTTGTTGGTACAATAGCCACATTCAGGTCTCAGCGAGATGGAATGGTCGAGACTCTGAAGCAATATCAGTTCTGTTATTCTGCCATTGTTGATGAATTGGAGGACCTCATCTCGAATCATGGAGATAGCAATTGA

Protein Analysis

357

Amino Acids

39.78

Weight (kDa)

5.28

Isoelectric Point (pI)

43.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Y_phosphatase PF00102 107 - 342 2.4e-65 Protein-tyrosine phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 56, 436
AatII GACGTC 1 cut(s) 60
Acc36I ACCTGC 1 cut(s) 845
AccB1I GGYRCC 1 cut(s) 513
AccII CGCG 3 cut(s) 148, 437, 764
AciI CCGC 9 cut(s) 105, 146, 148, 151, 549, 692, 707, 762, 764
AclWI GGATC 2 cut(s) 183, 942
AcoI YGGCCR 1 cut(s) 152
AcsI RAATTY 1 cut(s) 906
AcuI CTGAAG 2 cut(s) 395, 1013
AcyI GRCGYC 1 cut(s) 57
AdeI CACNNNGTG 1 cut(s) 618
AfaI GTAC 3 cut(s) 335, 509, 946
AfiI CCNNNNNNNGG 6 cut(s) 172, 321, 752, 827, 838, 960
AflIII ACRYGT 1 cut(s) 921
AgeI ACCGGT 1 cut(s) 510
AgsI TTSAA 2 cut(s) 214, 793
AjnI CCWGG 2 cut(s) 195, 232
AjuI GAANNNNNNNTTGG 2 cut(s) 576, 608
AluBI AGCT 7 cut(s) 25, 223, 262, 275, 291, 420, 826
AluI AGCT 7 cut(s) 25, 223, 262, 275, 291, 420, 826
Alw21I GWGCWC 1 cut(s) 194
Alw26I GTCTC 5 cut(s) 308, 444, 555, 969, 980
AlwI GGATC 2 cut(s) 183, 942
AoxI GGCC 4 cut(s) 152, 235, 743, 829
ApeKI GCWGC 1 cut(s) 291
ApoI RAATTY 1 cut(s) 906
ArsI GACNNNNNNTTYG 2 cut(s) 73, 105
AsiGI ACCGGT 1 cut(s) 510
AspLEI GCGC 1 cut(s) 437
AspS9I GGNCC 5 cut(s) 163, 461, 830, 867, 1039
AsuC2I CCSGG 1 cut(s) 248
AsuHPI GGTGA 3 cut(s) 413, 511, 691
AvaII GGWCC 4 cut(s) 163, 461, 867, 1039
BaeGI GKGCMC 1 cut(s) 518
BanI GGYRCC 1 cut(s) 513
BarI GAAGNNNNNNTAC 2 cut(s) 317, 349
Bbv12I GWGCWC 1 cut(s) 194
BbvI GCAGC 1 cut(s) 278
BccI CCATC 2 cut(s) 490, 968
BceAI ACGGC 2 cut(s) 61, 334
BcgI CGANNNNNNTGC 4 cut(s) 761, 795, 823, 857
BciT130I CCWGG 2 cut(s) 197, 234
BclI TGATCA 1 cut(s) 240
BcnI CCSGG 1 cut(s) 248
BcoDI GTCTC 5 cut(s) 308, 444, 555, 969, 980
BfaI CTAG 4 cut(s) 77, 224, 432, 537
BfuAI ACCTGC 1 cut(s) 845
BglII AGATCT 1 cut(s) 342
BisI GCNGC 5 cut(s) 105, 149, 152, 292, 707
BlsI GCNGC 5 cut(s) 106, 150, 153, 293, 708
Bme1390I CCNGG 3 cut(s) 197, 234, 248
Bme18I GGWCC 4 cut(s) 163, 461, 867, 1039
BmgT120I GGNCC 5 cut(s) 163, 461, 830, 867, 1039
BmiI GGNNCC 3 cut(s) 515, 705, 816
BmrFI CCNGG 3 cut(s) 197, 234, 248
BmsI GCATC 1 cut(s) 492
BplI GAGNNNNNCTC 2 cut(s) 150, 182
BpmI CTGGAG 1 cut(s) 340
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 248
BsaHI GRCGYC 1 cut(s) 57
BsaI GGTCTC 2 cut(s) 308, 969
BsaJI CCNNGG 5 cut(s) 43, 146, 195, 751, 762
BsaWI WCCGGW 3 cut(s) 510, 820, 869
Bsc4I CCNNNNNNNGG 6 cut(s) 172, 321, 752, 827, 838, 960
Bse118I RCCGGY 1 cut(s) 510
Bse1I ACTGG 1 cut(s) 323
Bse3DI GCAATG 2 cut(s) 301, 447
BseBI CCWGG 2 cut(s) 197, 234
BseDI CCNNGG 5 cut(s) 43, 146, 195, 751, 762
BseGI GGATG 1 cut(s) 586
BseLI CCNNNNNNNGG 6 cut(s) 172, 321, 752, 827, 838, 960
BseMI GCAATG 2 cut(s) 301, 447
BseMII CTCAG 2 cut(s) 319, 980
BseNI ACTGG 1 cut(s) 323
BseRI GAGGAG 1 cut(s) 716
BseSI GKGCMC 1 cut(s) 518
BseX3I CGGCCG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 278
BseYI CCCAGC 1 cut(s) 21
BsgI GTGCAG 2 cut(s) 865, 873
Bsh1236I CGCG 3 cut(s) 148, 437, 764
Bsh1285I CGRYCG 1 cut(s) 155
BshFI GGCC 4 cut(s) 154, 237, 745, 831
BshNI GGYRCC 1 cut(s) 513
BshTI ACCGGT 1 cut(s) 510
BsiEI CGRYCG 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 194
BsiSI CCGG 7 cut(s) 108, 125, 173, 247, 511, 821, 870
BslFI GGGAC 3 cut(s) 79, 94, 932
BslI CCNNNNNNNGG 6 cut(s) 172, 321, 752, 827, 838, 960
BsmAI GTCTC 5 cut(s) 308, 444, 555, 969, 980
BsmBI CGTCTC 1 cut(s) 444
BsmFI GGGAC 3 cut(s) 79, 94, 932
BsnI GGCC 4 cut(s) 154, 237, 745, 831
Bso31I GGTCTC 2 cut(s) 308, 969
Bsp1286I GDGCHC 2 cut(s) 194, 518
Bsp143I GATC 4 cut(s) 175, 240, 342, 934
Bsp19I CCATGG 1 cut(s) 751
BspACI CCGC 9 cut(s) 105, 146, 148, 151, 549, 692, 707, 762, 764
BspANI GGCC 4 cut(s) 154, 237, 745, 831
BspCNI CTCAG 2 cut(s) 318, 979
BspFNI CGCG 3 cut(s) 148, 437, 764
BspHI TCATGA 1 cut(s) 889
BspLI GGNNCC 3 cut(s) 515, 705, 816
BspMI ACCTGC 1 cut(s) 845
BspPI GGATC 2 cut(s) 183, 942
BspQI GCTCTTC 1 cut(s) 281
BspT107I GGYRCC 1 cut(s) 513
BspTNI GGTCTC 2 cut(s) 308, 969
BsrDI GCAATG 2 cut(s) 301, 447
BsrFI RCCGGY 1 cut(s) 510
BsrI ACTGG 1 cut(s) 323
BssAI RCCGGY 1 cut(s) 510
BssECI CCNNGG 5 cut(s) 43, 146, 195, 751, 762
BssMI GATC 4 cut(s) 175, 240, 342, 934
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 751
Bst2UI CCWGG 2 cut(s) 197, 234
Bst4CI ACNGT 2 cut(s) 85, 392
Bst6I CTCTTC 2 cut(s) 281, 896
BstACI GRCGYC 1 cut(s) 57
BstAPI GCANNNNNTGC 1 cut(s) 121
BstC8I GCNNGC 2 cut(s) 273, 418
BstDEI CTNAG 3 cut(s) 305, 615, 966
BstDSI CCRYGG 4 cut(s) 43, 146, 751, 762
BstF5I GGATG 1 cut(s) 586
BstFNI CGCG 3 cut(s) 148, 437, 764
BstHHI GCGC 1 cut(s) 437
BstKTI GATC 4 cut(s) 178, 243, 345, 937
BstMAI GTCTC 5 cut(s) 308, 444, 555, 969, 980
BstMBI GATC 4 cut(s) 175, 240, 342, 934
BstMCI CGRYCG 1 cut(s) 155
BstMWI GCNNNNNNNGC 6 cut(s) 121, 178, 229, 243, 268, 823
BstNI CCWGG 2 cut(s) 197, 234
BstNSI RCATGY 1 cut(s) 925
BstSCI CCNGG 3 cut(s) 195, 232, 246
BstSLI GKGCMC 1 cut(s) 518
BstUI CGCG 3 cut(s) 148, 437, 764
BstV1I GCAGC 1 cut(s) 278
BstX2I RGATCY 2 cut(s) 342, 934
BstYI RGATCY 2 cut(s) 342, 934
BstZI CGGCCG 1 cut(s) 152
BsuRI GGCC 4 cut(s) 154, 237, 745, 831
BtgI CCRYGG 4 cut(s) 43, 146, 751, 762
BtsCI GGATG 1 cut(s) 586
BtsI GCAGTG 1 cut(s) 316
BtsIMutI CAGTG 1 cut(s) 316
BveI ACCTGC 1 cut(s) 845
Cac8I GCNNGC 2 cut(s) 273, 418
CciI TCATGA 1 cut(s) 889
CfoI GCGC 1 cut(s) 437
Cfr10I RCCGGY 1 cut(s) 510
Cfr13I GGNCC 5 cut(s) 163, 461, 830, 867, 1039
Cfr42I CCGCGG 2 cut(s) 149, 765
CseI GACGC 2 cut(s) 44, 426
Csp6I GTAC 3 cut(s) 334, 508, 945
CspAI ACCGGT 1 cut(s) 510
CviAII CATG 5 cut(s) 752, 773, 890, 922, 1055
CviQI GTAC 3 cut(s) 334, 508, 945
DdeI CTNAG 3 cut(s) 305, 615, 966
DpnI GATC 4 cut(s) 177, 242, 344, 936
DpnII GATC 4 cut(s) 175, 240, 342, 934
DraIII CACNNNGTG 1 cut(s) 618
DrdI GACNNNNNNGTC 2 cut(s) 56, 436
DseDI GACNNNNNNGTC 2 cut(s) 56, 436
EaeI YGGCCR 1 cut(s) 152
EagI CGGCCG 1 cut(s) 152
Eam1104I CTCTTC 2 cut(s) 281, 896
EarI CTCTTC 2 cut(s) 281, 896
EclXI CGGCCG 1 cut(s) 152
Eco130I CCWWGG 1 cut(s) 751
Eco31I GGTCTC 2 cut(s) 308, 969
Eco47I GGWCC 4 cut(s) 163, 461, 867, 1039
Eco52I CGGCCG 1 cut(s) 152
Eco57I CTGAAG 2 cut(s) 395, 1013
EcoO109I RGGNCCY 1 cut(s) 1039
EcoRI GAATTC 1 cut(s) 906
EcoRII CCWGG 2 cut(s) 195, 232
EcoT14I CCWWGG 1 cut(s) 751
ErhI CCWWGG 1 cut(s) 751
Esp3I CGTCTC 1 cut(s) 444
FaeI CATG 5 cut(s) 755, 776, 893, 925, 1058
FalI AAGNNNNNCTT 2 cut(s) 450, 482
FaqI GGGAC 3 cut(s) 79, 94, 932
FatI CATG 5 cut(s) 751, 772, 889, 921, 1054
FauI CCCGC 2 cut(s) 685, 769
FbaI TGATCA 1 cut(s) 240
Fnu4HI GCNGC 5 cut(s) 105, 149, 152, 292, 707
FokI GGATG 1 cut(s) 593
Fsp4HI GCNGC 5 cut(s) 105, 149, 152, 292, 707
FspBI CTAG 4 cut(s) 77, 224, 432, 537
GlaI GCGC 1 cut(s) 436
GluI GCNGC 5 cut(s) 105, 149, 152, 292, 707
GsaI CCCAGC 1 cut(s) 25
GsuI CTGGAG 1 cut(s) 340
HaeIII GGCC 4 cut(s) 154, 237, 745, 831
HapII CCGG 7 cut(s) 108, 125, 173, 247, 511, 821, 870
HgaI GACGC 2 cut(s) 44, 426
HhaI GCGC 1 cut(s) 437
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 5 cut(s) 755, 776, 893, 925, 1058
Hin6I GCGC 1 cut(s) 435
HinP1I GCGC 1 cut(s) 435
HinfI GANTC 7 cut(s) 29, 89, 328, 635, 886, 988, 1051
HpaII CCGG 7 cut(s) 108, 125, 173, 247, 511, 821, 870
HphI GGTGA 3 cut(s) 413, 511, 691
Hpy166II GTNNAC 1 cut(s) 464
Hpy188I TCNGA 5 cut(s) 34, 375, 471, 700, 993
Hpy188III TCNNGA 6 cut(s) 70, 737, 782, 890, 985, 1048
Hpy8I GTNNAC 1 cut(s) 464
Hpy99I CGWCG 3 cut(s) 38, 53, 341
HpyAV CCTTC 1 cut(s) 370
HpyCH4III ACNGT 2 cut(s) 85, 392
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 6 cut(s) 294, 505, 724, 844, 854, 882
HpyF10VI GCNNNNNNNGC 6 cut(s) 121, 178, 229, 243, 268, 823
HpyF3I CTNAG 3 cut(s) 305, 615, 966
HpySE526I ACGT 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 5 cut(s) 755, 776, 893, 925, 1058
HspAI GCGC 1 cut(s) 435
Ksp22I TGATCA 1 cut(s) 240
KspI CCGCGG 2 cut(s) 149, 765
Kzo9I GATC 4 cut(s) 175, 240, 342, 934
LguI GCTCTTC 1 cut(s) 281
LmnI GCTCC 4 cut(s) 197, 703, 814, 823
Lsp1109I GCAGC 1 cut(s) 278
LweI GCATC 1 cut(s) 492
MaeI CTAG 4 cut(s) 77, 224, 432, 537
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 3 cut(s) 401, 424, 610
MalI GATC 4 cut(s) 177, 242, 344, 936
MboI GATC 4 cut(s) 175, 240, 342, 934
MboII GAAGA 4 cut(s) 298, 337, 645, 913
MfeI CAATTG 1 cut(s) 1066
MflI RGATCY 2 cut(s) 342, 934
MhlI GDGCHC 2 cut(s) 194, 518
MluCI AATT 3 cut(s) 906, 1031, 1066
MlyI GAGTC 2 cut(s) 644, 982
MmeI TCCRAC 1 cut(s) 57
MslI CAYNNNNRTG 1 cut(s) 849
MspA1I CMGCKG 2 cut(s) 148, 764
MspI CCGG 7 cut(s) 108, 125, 173, 247, 511, 821, 870
MspR9I CCNGG 3 cut(s) 197, 234, 248
MunI CAATTG 1 cut(s) 1066
MvaI CCWGG 2 cut(s) 197, 234
MvnI CGCG 3 cut(s) 148, 437, 764
MwoI GCNNNNNNNGC 6 cut(s) 121, 178, 229, 243, 268, 823
NciI CCSGG 1 cut(s) 248
NcoI CCATGG 1 cut(s) 751
NdeII GATC 4 cut(s) 175, 240, 342, 934
NlaIII CATG 5 cut(s) 755, 776, 893, 925, 1058
NlaIV GGNNCC 3 cut(s) 515, 705, 816
NmeAIII GCCGAG 1 cut(s) 180
NmuCI GTSAC 3 cut(s) 401, 424, 610
NspI RCATGY 1 cut(s) 925
PagI TCATGA 1 cut(s) 889
PciI ACATGT 1 cut(s) 921
PciSI GCTCTTC 1 cut(s) 281
PcsI WCGNNNNNNNCGW 1 cut(s) 434
PfeI GAWTC 5 cut(s) 29, 89, 328, 886, 1051
PinAI ACCGGT 1 cut(s) 510
PkrI GCNGC 5 cut(s) 106, 150, 153, 293, 708
PleI GAGTC 2 cut(s) 643, 982
PpsI GAGTC 2 cut(s) 643, 982
PpuMI RGGWCCY 1 cut(s) 1039
PscI ACATGT 1 cut(s) 921
Psp5II RGGWCCY 1 cut(s) 1039
Psp6I CCWGG 2 cut(s) 195, 232
PspFI CCCAGC 1 cut(s) 21
PspGI CCWGG 2 cut(s) 195, 232
PspN4I GGNNCC 3 cut(s) 515, 705, 816
PspPI GGNCC 5 cut(s) 163, 461, 830, 867, 1039
PspPPI RGGWCCY 1 cut(s) 1039
PsuI RGATCY 2 cut(s) 342, 934
RsaI GTAC 3 cut(s) 335, 509, 946
RsaNI GTAC 3 cut(s) 334, 508, 945
RseI CAYNNNNRTG 1 cut(s) 849
SacII CCGCGG 2 cut(s) 149, 765
SapI GCTCTTC 1 cut(s) 281
SatI GCNGC 5 cut(s) 105, 149, 152, 292, 707
Sau3AI GATC 4 cut(s) 175, 240, 342, 934
Sau96I GGNCC 5 cut(s) 163, 461, 830, 867, 1039
SchI GAGTC 2 cut(s) 644, 982
ScrFI CCNGG 3 cut(s) 197, 234, 248
SduI GDGCHC 2 cut(s) 194, 518
SfaNI GCATC 1 cut(s) 492
Sfr303I CCGCGG 2 cut(s) 149, 765
SgrBI CCGCGG 2 cut(s) 149, 765
SinI GGWCC 4 cut(s) 163, 461, 867, 1039
SmiMI CAYNNNNRTG 1 cut(s) 849
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 3 cut(s) 906, 1031, 1066
SsiI CCGC 9 cut(s) 105, 146, 148, 151, 549, 692, 707, 762, 764
SspMI CTAG 4 cut(s) 77, 224, 432, 537
StyD4I CCNGG 3 cut(s) 195, 232, 246
StyI CCWWGG 1 cut(s) 751
TaaI ACNGT 2 cut(s) 85, 392
TaiI ACGT 1 cut(s) 60
TaqI TCGA 4 cut(s) 27, 571, 984, 1049
TasI AATT 3 cut(s) 906, 1031, 1066
TauI GCSGC 4 cut(s) 107, 151, 154, 709
TfiI GAWTC 5 cut(s) 29, 89, 328, 886, 1051
TscAI CASTG 1 cut(s) 316
TseFI GTSAC 3 cut(s) 401, 424, 610
TseI GCWGC 1 cut(s) 291
Tsp45I GTSAC 3 cut(s) 401, 424, 610
TspDTI ATGAA 6 cut(s) 372, 436, 597, 878, 914, 1044
TspRI CASTG 1 cut(s) 316
VpaK11BI GGWCC 4 cut(s) 163, 461, 867, 1039
XapI RAATTY 1 cut(s) 906
XceI RCATGY 1 cut(s) 925
XspI CTAG 4 cut(s) 77, 224, 432, 537
ZraI GACGTC 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.