RchiOBHm_Chr7g0181551

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0016580
Physical Location & Seq
Reverse (-)
3165105 .. 3165796
692 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16193

Sequence Viewer

Length: 273 bp
ATGGCTAGCAGTACTACTCTCATTCGTCTACTCGTAATCTTGCTAGGGTTTTCTCACCTCATCTGCTTCAATGCTGTCCCAGTTACAAGAATCGGAGGCCTAAAGCATATCGGACCTGAAGTTCATCAAACCGTTGCAGAAAATAACAAACTGATAACCACAGAAATGAAATTTTATGAAAGAATGGATGTGGAGCTTAATGACTACCCGGGATCAGGGGCCAACAACCGGCACACTCCGAAGCCTCAATATGGGAGATGCGTTGATTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.04

Weight (kDa)

7.77

Isoelectric Point (pI)

31.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016580)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47510
fragaria_vesca FvH4_5g14840
malus_domestica MD06G1194400.v1.1 MD14G1201500.v1.1
prunus_persica Prupe.5G194500_v2.0.a1
pyrus_communis pycom14g16690
rosa_chinensis RchiOBHm_Chr7g0181551
rosa_multiflora Rmu_sc0004621.1_g000035
rosa_roxburghii Rroxscaffold_3G00271910
rosa_rugosa Rorug06G0442100 Rorug06G0442100
rosa_samantha Rh7AG044300 Rh7DG043900
rosa_wichuraiana Rw7G003670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 28
AclWI GGATC 1 cut(s) 220
AcsI RAATTY 1 cut(s) 170
AcuI CTGAAG 1 cut(s) 138
AfaI GTAC 1 cut(s) 13
AfiI CCNNNNNNNGG 3 cut(s) 215, 228, 251
AgsI TTSAA 1 cut(s) 70
AloI GAACNNNNNNTCC 2 cut(s) 105, 137
AluBI AGCT 1 cut(s) 196
AluI AGCT 1 cut(s) 196
AlwI GGATC 1 cut(s) 220
Ama87I CYCGRG 1 cut(s) 208
AoxI GGCC 2 cut(s) 97, 219
ApoI RAATTY 1 cut(s) 170
AspS9I GGNCC 2 cut(s) 113, 219
AsuC2I CCSGG 2 cut(s) 209, 210
AsuHPI GGTGA 1 cut(s) 47
AsuNHI GCTAGC 1 cut(s) 5
AvaI CYCGRG 1 cut(s) 208
AvaII GGWCC 1 cut(s) 113
BcnI CCSGG 2 cut(s) 209, 210
BfaI CTAG 2 cut(s) 6, 44
BmcAI AGTACT 1 cut(s) 13
Bme1390I CCNGG 2 cut(s) 209, 210
Bme18I GGWCC 1 cut(s) 113
BmeT110I CYCGRG 1 cut(s) 208
BmgT120I GGNCC 2 cut(s) 113, 219
BmiI GGNNCC 1 cut(s) 220
BmrFI CCNGG 2 cut(s) 209, 210
BmrI ACTGGG 1 cut(s) 74
BmsI GCATC 1 cut(s) 248
BmtI GCTAGC 1 cut(s) 9
BmuI ACTGGG 1 cut(s) 74
BpuMI CCSGG 2 cut(s) 209, 210
BsaJI CCNNGG 1 cut(s) 208
Bsc4I CCNNNNNNNGG 3 cut(s) 215, 228, 251
Bse118I RCCGGY 1 cut(s) 228
Bse1I ACTGG 1 cut(s) 80
BseDI CCNNGG 1 cut(s) 208
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 3 cut(s) 215, 228, 251
BseNI ACTGG 1 cut(s) 80
BshFI GGCC 2 cut(s) 99, 221
BsiHKCI CYCGRG 1 cut(s) 208
BsiSI CCGG 2 cut(s) 209, 229
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 3 cut(s) 215, 228, 251
BsmFI GGGAC 1 cut(s) 62
BsnI GGCC 2 cut(s) 99, 221
BsoBI CYCGRG 1 cut(s) 208
Bsp143I GATC 1 cut(s) 212
BspANI GGCC 2 cut(s) 99, 221
BspLI GGNNCC 1 cut(s) 220
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 1 cut(s) 220
BsrFI RCCGGY 1 cut(s) 228
BsrI ACTGG 1 cut(s) 80
BssAI RCCGGY 1 cut(s) 228
BssECI CCNNGG 1 cut(s) 208
BssMI GATC 1 cut(s) 212
Bst4CI ACNGT 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 7
BstF5I GGATG 1 cut(s) 193
BstKTI GATC 1 cut(s) 215
BstMBI GATC 1 cut(s) 212
BstMWI GCNNNNNNNGC 1 cut(s) 267
BstSCI CCNGG 2 cut(s) 207, 208
BsuRI GGCC 2 cut(s) 99, 221
BtsCI GGATG 1 cut(s) 193
Cac8I GCNNGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 228
Cfr13I GGNCC 2 cut(s) 113, 219
Cfr9I CCCGGG 1 cut(s) 208
Csp6I GTAC 1 cut(s) 12
CviJI RGCY 5 cut(s) 5, 99, 196, 221, 244
CviKI_1 RGCY 5 cut(s) 5, 99, 196, 221, 244
CviQI GTAC 1 cut(s) 12
DpnI GATC 1 cut(s) 214
DpnII GATC 1 cut(s) 212
Eco147I AGGCCT 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 138
Eco88I CYCGRG 1 cut(s) 208
FaiI YATR 3 cut(s) 108, 177, 252
FaqI GGGAC 1 cut(s) 62
FblI GTMKAC 1 cut(s) 28
FokI GGATG 1 cut(s) 200
FspBI CTAG 2 cut(s) 6, 44
HaeIII GGCC 2 cut(s) 99, 221
HapII CCGG 2 cut(s) 209, 229
HinfI GANTC 1 cut(s) 90
HpaII CCGG 2 cut(s) 209, 229
HphI GGTGA 1 cut(s) 47
Hpy166II GTNNAC 1 cut(s) 29
Hpy188I TCNGA 3 cut(s) 95, 113, 240
Hpy8I GTNNAC 1 cut(s) 29
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4V TGCA 1 cut(s) 137
HpyF10VI GCNNNNNNNGC 1 cut(s) 267
Kzo9I GATC 1 cut(s) 212
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 5 cut(s) 93, 129, 201, 222, 242
LweI GCATC 1 cut(s) 248
MaeI CTAG 2 cut(s) 6, 44
MaeIII GTNAC 1 cut(s) 82
MalI GATC 1 cut(s) 214
MboI GATC 1 cut(s) 212
MluCI AATT 1 cut(s) 170
MnlI CCTC 3 cut(s) 68, 89, 255
MseI TTAA 1 cut(s) 198
MslI CAYNNNNRTG 1 cut(s) 164
MspI CCGG 2 cut(s) 209, 229
MspR9I CCNGG 2 cut(s) 209, 210
MwoI GCNNNNNNNGC 1 cut(s) 267
NciI CCSGG 2 cut(s) 209, 210
NdeII GATC 1 cut(s) 212
NheI GCTAGC 1 cut(s) 5
NlaIV GGNNCC 1 cut(s) 220
PceI AGGCCT 1 cut(s) 99
PfeI GAWTC 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 220
PspPI GGNCC 2 cut(s) 113, 219
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
RseI CAYNNNNRTG 1 cut(s) 164
SaqAI TTAA 1 cut(s) 198
Sau3AI GATC 1 cut(s) 212
Sau96I GGNCC 2 cut(s) 113, 219
ScaI AGTACT 1 cut(s) 13
ScrFI CCNGG 2 cut(s) 209, 210
SetI ASST 3 cut(s) 60, 118, 198
SfaNI GCATC 1 cut(s) 248
SinI GGWCC 1 cut(s) 113
SmaI CCCGGG 1 cut(s) 210
SmiMI CAYNNNNRTG 1 cut(s) 164
Sse9I AATT 1 cut(s) 170
SseBI AGGCCT 1 cut(s) 99
SspMI CTAG 2 cut(s) 6, 44
StuI AGGCCT 1 cut(s) 99
StyD4I CCNGG 2 cut(s) 207, 208
TaaI ACNGT 1 cut(s) 133
TasI AATT 1 cut(s) 170
TatI WGTACW 1 cut(s) 11
TfiI GAWTC 1 cut(s) 90
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TspDTI ATGAA 3 cut(s) 113, 182, 192
TspMI CCCGGG 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 113
XapI RAATTY 1 cut(s) 170
XmaI CCCGGG 1 cut(s) 208
XmiI GTMKAC 1 cut(s) 28
XspI CTAG 2 cut(s) 6, 44
ZrmI AGTACT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.