Rh7DG043900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0016580
Physical Location & Seq
Reverse (-)
3341085 .. 3342589
1505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG043900.1

Sequence Viewer

Length: 354 bp
ATGGCTAGCAGTACTACTCTCATTCGTCTACTCGTAATCTTGCTAGGGTTTTCTCACCTCATCTGCTTCAATGCTGTCCCAGTTACAAGTAATAATCTTAAACCAACTTTTCACATTCTCTTTCTTCTTCTACTTCCATCTTCTTCTGACTTGTTACTTTTGCTTGCAGGAATCGGAGGCCTAAAGCATATCGGACCTGAAGTTCATCAAACCGTTGCAGAAAATAACAAACTGATAACCACAGAAATGAAATTTTATGAAAGAATGGATGTGGAGCTTAATGACTACCCGGGATCAGGGGCCAACAACCGGCACACTCCGAAGCCTCAATATGGGAGATGCGTTGATTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.92

Weight (kDa)

6.95

Isoelectric Point (pI)

37.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016580)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47510
fragaria_vesca FvH4_5g14840
malus_domestica MD06G1194400.v1.1 MD14G1201500.v1.1
prunus_persica Prupe.5G194500_v2.0.a1
pyrus_communis pycom14g16690
rosa_chinensis RchiOBHm_Chr7g0181551
rosa_multiflora Rmu_sc0004621.1_g000035
rosa_roxburghii Rroxscaffold_3G00271910
rosa_rugosa Rorug06G0442100 Rorug06G0442100
rosa_samantha Rh7AG044300 Rh7DG043900
rosa_wichuraiana Rw7G003670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 28
AclWI GGATC 1 cut(s) 301
AcsI RAATTY 1 cut(s) 251
AcuI CTGAAG 1 cut(s) 219
AfaI GTAC 1 cut(s) 13
AfiI CCNNNNNNNGG 3 cut(s) 296, 309, 332
AgsI TTSAA 1 cut(s) 70
AloI GAACNNNNNNTCC 2 cut(s) 186, 218
AluBI AGCT 1 cut(s) 277
AluI AGCT 1 cut(s) 277
AlwI GGATC 1 cut(s) 301
Ama87I CYCGRG 1 cut(s) 289
AoxI GGCC 2 cut(s) 178, 300
ApoI RAATTY 1 cut(s) 251
AspS9I GGNCC 2 cut(s) 194, 300
AsuC2I CCSGG 2 cut(s) 290, 291
AsuHPI GGTGA 1 cut(s) 47
AsuNHI GCTAGC 1 cut(s) 5
AvaI CYCGRG 1 cut(s) 289
AvaII GGWCC 1 cut(s) 194
BccI CCATC 1 cut(s) 145
BcnI CCSGG 2 cut(s) 290, 291
BfaI CTAG 2 cut(s) 6, 44
BmcAI AGTACT 1 cut(s) 13
Bme1390I CCNGG 2 cut(s) 290, 291
Bme18I GGWCC 1 cut(s) 194
BmeT110I CYCGRG 1 cut(s) 289
BmgT120I GGNCC 2 cut(s) 194, 300
BmiI GGNNCC 1 cut(s) 301
BmrFI CCNGG 2 cut(s) 290, 291
BmrI ACTGGG 1 cut(s) 74
BmsI GCATC 1 cut(s) 329
BmtI GCTAGC 1 cut(s) 9
BmuI ACTGGG 1 cut(s) 74
BpuMI CCSGG 2 cut(s) 290, 291
BsaJI CCNNGG 1 cut(s) 289
Bsc4I CCNNNNNNNGG 3 cut(s) 296, 309, 332
Bse118I RCCGGY 1 cut(s) 309
Bse1I ACTGG 1 cut(s) 80
BseDI CCNNGG 1 cut(s) 289
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 3 cut(s) 296, 309, 332
BseNI ACTGG 1 cut(s) 80
BshFI GGCC 2 cut(s) 180, 302
BsiHKCI CYCGRG 1 cut(s) 289
BsiSI CCGG 2 cut(s) 290, 310
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 3 cut(s) 296, 309, 332
BsmFI GGGAC 1 cut(s) 62
BsnI GGCC 2 cut(s) 180, 302
BsoBI CYCGRG 1 cut(s) 289
Bsp143I GATC 1 cut(s) 293
BspANI GGCC 2 cut(s) 180, 302
BspLI GGNNCC 1 cut(s) 301
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 1 cut(s) 301
BsrFI RCCGGY 1 cut(s) 309
BsrI ACTGG 1 cut(s) 80
BssAI RCCGGY 1 cut(s) 309
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 1 cut(s) 293
Bst4CI ACNGT 1 cut(s) 214
BstC8I GCNNGC 2 cut(s) 7, 165
BstF5I GGATG 1 cut(s) 274
BstKTI GATC 1 cut(s) 296
BstMBI GATC 1 cut(s) 293
BstMWI GCNNNNNNNGC 1 cut(s) 348
BstSCI CCNGG 2 cut(s) 288, 289
BsuRI GGCC 2 cut(s) 180, 302
BtsCI GGATG 1 cut(s) 274
Cac8I GCNNGC 2 cut(s) 7, 165
Cfr10I RCCGGY 1 cut(s) 309
Cfr13I GGNCC 2 cut(s) 194, 300
Cfr9I CCCGGG 1 cut(s) 289
Csp6I GTAC 1 cut(s) 12
CviJI RGCY 5 cut(s) 5, 180, 277, 302, 325
CviKI_1 RGCY 5 cut(s) 5, 180, 277, 302, 325
CviQI GTAC 1 cut(s) 12
DpnI GATC 1 cut(s) 295
DpnII GATC 1 cut(s) 293
Eco147I AGGCCT 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 194
Eco57I CTGAAG 1 cut(s) 219
Eco88I CYCGRG 1 cut(s) 289
FaiI YATR 3 cut(s) 189, 258, 333
FaqI GGGAC 1 cut(s) 62
FblI GTMKAC 1 cut(s) 28
FokI GGATG 1 cut(s) 281
FspBI CTAG 2 cut(s) 6, 44
HaeIII GGCC 2 cut(s) 180, 302
HapII CCGG 2 cut(s) 290, 310
HinfI GANTC 1 cut(s) 171
HpaII CCGG 2 cut(s) 290, 310
HphI GGTGA 1 cut(s) 47
Hpy166II GTNNAC 1 cut(s) 29
Hpy188I TCNGA 4 cut(s) 148, 176, 194, 321
Hpy8I GTNNAC 1 cut(s) 29
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4V TGCA 2 cut(s) 167, 218
HpyF10VI GCNNNNNNNGC 1 cut(s) 348
Kzo9I GATC 1 cut(s) 293
LmnI GCTCC 1 cut(s) 274
LpnPI CCDG 6 cut(s) 93, 153, 210, 282, 303, 323
LweI GCATC 1 cut(s) 329
MaeI CTAG 2 cut(s) 6, 44
MaeIII GTNAC 2 cut(s) 82, 153
MalI GATC 1 cut(s) 295
MboI GATC 1 cut(s) 293
MboII GAAGA 4 cut(s) 116, 119, 132, 135
MluCI AATT 1 cut(s) 251
MnlI CCTC 3 cut(s) 68, 170, 336
MseI TTAA 2 cut(s) 99, 279
MslI CAYNNNNRTG 1 cut(s) 245
MspI CCGG 2 cut(s) 290, 310
MspR9I CCNGG 2 cut(s) 290, 291
MwoI GCNNNNNNNGC 1 cut(s) 348
NciI CCSGG 2 cut(s) 290, 291
NdeII GATC 1 cut(s) 293
NheI GCTAGC 1 cut(s) 5
NlaIV GGNNCC 1 cut(s) 301
PceI AGGCCT 1 cut(s) 180
PfeI GAWTC 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 301
PspPI GGNCC 2 cut(s) 194, 300
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
RseI CAYNNNNRTG 1 cut(s) 245
SaqAI TTAA 2 cut(s) 99, 279
Sau3AI GATC 1 cut(s) 293
Sau96I GGNCC 2 cut(s) 194, 300
ScaI AGTACT 1 cut(s) 13
ScrFI CCNGG 2 cut(s) 290, 291
SetI ASST 3 cut(s) 60, 199, 279
SfaNI GCATC 1 cut(s) 329
SinI GGWCC 1 cut(s) 194
SmaI CCCGGG 1 cut(s) 291
SmiMI CAYNNNNRTG 1 cut(s) 245
Sse9I AATT 1 cut(s) 251
SseBI AGGCCT 1 cut(s) 180
SspMI CTAG 2 cut(s) 6, 44
StuI AGGCCT 1 cut(s) 180
StyD4I CCNGG 2 cut(s) 288, 289
TaaI ACNGT 1 cut(s) 214
TasI AATT 1 cut(s) 251
TatI WGTACW 1 cut(s) 11
TfiI GAWTC 1 cut(s) 171
Tru1I TTAA 2 cut(s) 99, 279
Tru9I TTAA 2 cut(s) 99, 279
TspDTI ATGAA 3 cut(s) 194, 263, 273
TspMI CCCGGG 1 cut(s) 289
VpaK11BI GGWCC 1 cut(s) 194
XapI RAATTY 1 cut(s) 251
XmaI CCCGGG 1 cut(s) 289
XmiI GTMKAC 1 cut(s) 28
XspI CTAG 2 cut(s) 6, 44
ZrmI AGTACT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.