MD06G1194400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0016580
Physical Location & Seq
Reverse (-)
32910284 .. 32911055
772 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1194400.v1.1.491

Sequence Viewer

Length: 252 bp
ATGGCAAGCAGTCTCCTTCATGTGCTTGTGATCTTGCTAGGGTTTTCTCAACTTATCTTCTTGAATGCCATCCCAGCTACAAGAATTGGAAGTCTAAAGCTTGGACCTCAACTTCATCAAATTGCAGGAAGTAACAAACTGGTAACCACAGAGAAGATCTATAATGAGAGAGCTATCAGTGAAAGGATGGGTGTGGAGCTAAATGACTACCCGGGATCAGGCGCCAACAACCGCCACACCCCGAAACCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.02

Weight (kDa)

9.69

Isoelectric Point (pI)

25.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016580)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47510
fragaria_vesca FvH4_5g14840
malus_domestica MD06G1194400.v1.1 MD14G1201500.v1.1
prunus_persica Prupe.5G194500_v2.0.a1
pyrus_communis pycom14g16690
rosa_chinensis RchiOBHm_Chr7g0181551
rosa_multiflora Rmu_sc0004621.1_g000035
rosa_roxburghii Rroxscaffold_3G00271910
rosa_rugosa Rorug06G0442100 Rorug06G0442100
rosa_samantha Rh7AG044300 Rh7DG043900
rosa_wichuraiana Rw7G003670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 221
AciI CCGC 1 cut(s) 232
AclWI GGATC 1 cut(s) 223
AcyI GRCGYC 1 cut(s) 222
AfiI CCNNNNNNNGG 1 cut(s) 218
AgsI TTSAA 1 cut(s) 64
AluBI AGCT 4 cut(s) 77, 100, 173, 199
AluI AGCT 4 cut(s) 77, 100, 173, 199
Alw26I GTCTC 1 cut(s) 17
AlwI GGATC 1 cut(s) 223
Ama87I CYCGRG 1 cut(s) 211
AspLEI GCGC 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 104
AsuC2I CCSGG 2 cut(s) 212, 213
AvaI CYCGRG 1 cut(s) 211
AvaII GGWCC 1 cut(s) 104
BanI GGYRCC 1 cut(s) 221
BccI CCATC 2 cut(s) 77, 181
BcnI CCSGG 2 cut(s) 212, 213
BcoDI GTCTC 1 cut(s) 17
BfaI CTAG 1 cut(s) 38
BfoI RGCGCY 1 cut(s) 225
BglII AGATCT 1 cut(s) 156
Bme1390I CCNGG 2 cut(s) 212, 213
Bme18I GGWCC 1 cut(s) 104
BmeT110I CYCGRG 1 cut(s) 211
BmgT120I GGNCC 1 cut(s) 104
BmiI GGNNCC 1 cut(s) 223
BmrFI CCNGG 2 cut(s) 212, 213
BpuMI CCSGG 2 cut(s) 212, 213
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 211
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse1I ACTGG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 211
BseGI GGATG 2 cut(s) 69, 192
BseLI CCNNNNNNNGG 1 cut(s) 218
BseNI ACTGG 1 cut(s) 144
BseYI CCCAGC 1 cut(s) 73
BshNI GGYRCC 1 cut(s) 221
BsiHKCI CYCGRG 1 cut(s) 211
BsiSI CCGG 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 218
BsmAI GTCTC 1 cut(s) 17
BsmI GAATGC 1 cut(s) 70
BsoBI CYCGRG 1 cut(s) 211
Bsp143I GATC 3 cut(s) 30, 156, 215
BspACI CCGC 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 223
BspPI GGATC 1 cut(s) 223
BspT107I GGYRCC 1 cut(s) 221
BsrI ACTGG 1 cut(s) 144
BssECI CCNNGG 1 cut(s) 211
BssMI GATC 3 cut(s) 30, 156, 215
BssNI GRCGYC 1 cut(s) 222
Bst4CI ACNGT 1 cut(s) 249
BstACI GRCGYC 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 7
BstEII GGTNACC 1 cut(s) 142
BstF5I GGATG 2 cut(s) 69, 192
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 1 cut(s) 224
BstKTI GATC 3 cut(s) 33, 159, 218
BstMAI GTCTC 1 cut(s) 17
BstMBI GATC 3 cut(s) 30, 156, 215
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstPI GGTNACC 1 cut(s) 142
BstSCI CCNGG 2 cut(s) 210, 211
BstX2I RGATCY 1 cut(s) 156
BstYI RGATCY 1 cut(s) 156
BtsCI GGATG 2 cut(s) 69, 192
BtsIMutI CAGTG 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 224
Cfr13I GGNCC 1 cut(s) 104
Cfr9I CCCGGG 1 cut(s) 211
CviAII CATG 1 cut(s) 20
CviJI RGCY 4 cut(s) 77, 100, 173, 199
CviKI_1 RGCY 4 cut(s) 77, 100, 173, 199
DinI GGCGCC 1 cut(s) 223
DpnI GATC 3 cut(s) 32, 158, 217
DpnII GATC 3 cut(s) 30, 156, 215
Eco47I GGWCC 1 cut(s) 104
Eco88I CYCGRG 1 cut(s) 211
Eco91I GGTNACC 1 cut(s) 142
EcoO65I GGTNACC 1 cut(s) 142
EgeI GGCGCC 1 cut(s) 223
EheI GGCGCC 1 cut(s) 223
FaeI CATG 1 cut(s) 23
FaiI YATR 2 cut(s) 21, 162
FatI CATG 1 cut(s) 19
FokI GGATG 2 cut(s) 56, 199
FspBI CTAG 1 cut(s) 38
GlaI GCGC 1 cut(s) 223
GsaI CCCAGC 1 cut(s) 77
HaeII RGCGCY 1 cut(s) 225
HapII CCGG 1 cut(s) 212
HhaI GCGC 1 cut(s) 224
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 1 cut(s) 23
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HindIII AAGCTT 1 cut(s) 98
HpaII CCGG 1 cut(s) 212
Hpy188III TCNNGA 1 cut(s) 61
HpyAV CCTTC 1 cut(s) 26
HpyCH4III ACNGT 1 cut(s) 249
HpyCH4V TGCA 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 1 cut(s) 23
HspAI GCGC 1 cut(s) 222
KasI GGCGCC 1 cut(s) 221
Kzo9I GATC 3 cut(s) 30, 156, 215
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 5 cut(s) 87, 111, 125, 204, 225
MaeI CTAG 1 cut(s) 38
MaeIII GTNAC 2 cut(s) 131, 142
MalI GATC 3 cut(s) 32, 158, 217
MboI GATC 3 cut(s) 30, 156, 215
MboII GAAGA 2 cut(s) 49, 166
MflI RGATCY 1 cut(s) 156
MluCI AATT 2 cut(s) 84, 120
Mly113I GGCGCC 1 cut(s) 222
MnlI CCTC 1 cut(s) 117
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 2 cut(s) 212, 213
Mva1269I GAATGC 1 cut(s) 70
MwoI GCNNNNNNNGC 1 cut(s) 74
NarI GGCGCC 1 cut(s) 222
NciI CCSGG 2 cut(s) 212, 213
NdeII GATC 3 cut(s) 30, 156, 215
NlaIII CATG 1 cut(s) 23
NlaIV GGNNCC 1 cut(s) 223
PctI GAATGC 1 cut(s) 70
PluTI GGCGCC 1 cut(s) 225
PspEI GGTNACC 1 cut(s) 142
PspFI CCCAGC 1 cut(s) 73
PspN4I GGNNCC 1 cut(s) 223
PspPI GGNCC 1 cut(s) 104
PsuI RGATCY 1 cut(s) 156
Sau3AI GATC 3 cut(s) 30, 156, 215
Sau96I GGNCC 1 cut(s) 104
ScrFI CCNGG 2 cut(s) 212, 213
SetI ASST 5 cut(s) 79, 102, 109, 175, 201
SfoI GGCGCC 1 cut(s) 223
SinI GGWCC 1 cut(s) 104
SmaI CCCGGG 1 cut(s) 213
Sse9I AATT 2 cut(s) 84, 120
SsiI CCGC 1 cut(s) 232
SspDI GGCGCC 1 cut(s) 221
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 2 cut(s) 210, 211
TaaI ACNGT 1 cut(s) 249
TasI AATT 2 cut(s) 84, 120
TscAI CASTG 1 cut(s) 184
TspDTI ATGAA 2 cut(s) 8, 104
TspMI CCCGGG 1 cut(s) 211
TspRI CASTG 1 cut(s) 184
VpaK11BI GGWCC 1 cut(s) 104
XmaI CCCGGG 1 cut(s) 211
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.