FvH4_5g14870

Geranylgeranyl diphosphate reductase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
8431521 .. 8433702
2182 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g14870.t1

Sequence Viewer

Length: 1410 bp
ATGGCCTCCATCGCTCTCAAATCCTTCGTCGGCCTCCGCCGCCACTCCGCCGTCGAAAGCCCCAACTTCACCTCCCAGTCCAAACCCATCTCCTCGTTCCCATCAACTCCCCGAACTTTCCGCGTCCTCGCCGCCAAAACCAGCCCGAAAGTCGCGGGCCGGAACCTCCGGGTCGCCGTCATAGGCGGTGGCCCCGCCGGCGGAGCCGCCGCCGAGACGCTGGCCAAAGGCGGCGTCGAGACGTTTCTCATCGAGCGGAAAATGGACAACTGCAAGCCCTGCGGCGGAGCCATCCCGCTTTGCATGGTGGGGGAGTTTGACCTGCCGTTGGATATCATTGACCGCCGCGTCACCAAGATGAAGATGATATCGCCGTCCAACGTGGCGGTGGATATCGGGCAGACGCTGAAGCCGCACGAGTATATTGGGATGGTGCGGCGCGAAGTGCTGGATAATTACTTGAGGAATAGGGCGAGTGAGAATGGGGCCAATGTGATTAACGGGCTGTTTTTGAAGATGGATAGTCCGGTAAAGGGAGATGGGACGTCGCCGTATGTGTTGCATTACACCGAGTATGACGGCAAGGCCGGCGGGGTTGGTGTCAAGAAGACTTTGGAGGTTGATGCTGTGATTGGAGCCGATGGGGCTAATTCTAGAGTGGCCAAGTCTATTGATGCTGGTGATTATGAGTACGCCATTGCGTTTCAGGAGAGGATCAAGATCCCTGATGACAAAATGGTGTACTACGAGAACTTGGCAGAGATGTATGTAGGTGATGATGTGTCACCGGACTTTTACGGGTGGGTGTTCCCAAAGTGTGATCATGTGGCAGTGGGAACAGGCACTGTGACTCACAAAGGAGACATCAAGAAGTTCCAGCTAGCAACAAGAAACCGTGCCAAGGACAAGATTTTAGGCGGAAAGATTCTACGAGTGGAGGCACATCCGATCCCTGAGCACCCCCGCCCACGAAGGCTAGCGGGGAGAGTGGCGCTAGTCGGTGATGCAGCCGGGTATGTGACTAAATGCTCGGGTGAAGGTATCTACTTTGCAGCAAAGAGTGGAAGGATGTGCGCAGAAGCGATAGTTGAGGGATCAGAGAATGGGAAGAGGATGATAAACGAAGGAGATTTGAGGAACTATTTGGAGAAGTGGGACAAGACTTACTGGCCGACTTACAAGGTGCTCGATATCTTACAGAAGGTGTTTTACAGGTCGAACCCGGCGAGAGAAGCGTTTGTGGAGATGTGTGCAGATGAGTATGTGCAGAAGATGACCTTCGATAGTTATTTGTACAAAAGGGTGGTGCCTGGGAACCCATGGGAGGATTTGAAGTTGGCTGTGAACACCATTGGGAGCTTGGTTAGGGCTAATGCACTTAAGCAAGAGATGGAAAAAATTGGTGCTTAG

Protein Analysis

470

Amino Acids

51.52

Weight (kDa)

9.02

Isoelectric Point (pI)

37.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014208)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 347
AatII GACGTC 1 cut(s) 548
Acc16I TGCGCA 1 cut(s) 1075
Acc36I ACCTGC 1 cut(s) 330
AccB1I GGYRCC 1 cut(s) 1306
AccBSI CCGCTC 1 cut(s) 256
AccII CGCG 4 cut(s) 123, 155, 348, 441
AclWI GGATC 4 cut(s) 715, 722, 943, 1102
AcoI YGGCCR 3 cut(s) 222, 660, 1169
AcuI CTGAAG 1 cut(s) 428
AcyI GRCGYC 2 cut(s) 234, 545
AfaI GTAC 3 cut(s) 692, 743, 1295
AfiI CCNNNNNNNGG 6 cut(s) 200, 284, 328, 533, 901, 1324
AflII CTTAAG 1 cut(s) 1379
AgsI TTSAA 2 cut(s) 514, 1333
AjnI CCWGG 1 cut(s) 1309
AluBI AGCT 2 cut(s) 880, 1359
AluI AGCT 2 cut(s) 880, 1359
Alw21I GWGCWC 2 cut(s) 960, 1188
Alw26I GTCTC 3 cut(s) 209, 233, 855
AlwI GGATC 4 cut(s) 715, 722, 943, 1102
AlwNI CAGNNNCTG 2 cut(s) 406, 845
Ama87I CYCGRG 1 cut(s) 1030
AoxI GGCC 9 cut(s) 3, 31, 157, 190, 222, 486, 585, 660, 1169
ApeKI GCWGC 2 cut(s) 1007, 1052
ArsI GACNNNNNNTTYG 4 cut(s) 12, 44, 219, 251
AspLEI GCGC 3 cut(s) 441, 994, 1076
AspS9I GGNCC 3 cut(s) 157, 191, 486
AsuC2I CCSGG 3 cut(s) 170, 1012, 1223
AsuHPI GGTGA 7 cut(s) 61, 343, 692, 777, 785, 1013, 1046
AsuNHI GCTAGC 2 cut(s) 880, 976
AvaI CYCGRG 1 cut(s) 1030
BalI TGGCCA 2 cut(s) 224, 662
BanI GGYRCC 1 cut(s) 1306
BarI GAAGNNNNNNTAC 2 cut(s) 1193, 1225
BauI CACGAG 1 cut(s) 416
BbsI GAAGAC 1 cut(s) 614
Bbv12I GWGCWC 2 cut(s) 960, 1188
BbvI GCAGC 2 cut(s) 1019, 1064
BccI CCATC 9 cut(s) 17, 95, 109, 299, 424, 511, 533, 635, 1384
BceAI ACGGC 6 cut(s) 35, 161, 310, 358, 535, 595
BciT130I CCWGG 1 cut(s) 1311
BclI TGATCA 1 cut(s) 820
BcnI CCSGG 3 cut(s) 170, 1012, 1223
BcoDI GTCTC 3 cut(s) 209, 233, 855
BfaI CTAG 4 cut(s) 654, 881, 977, 995
BfoI RGCGCY 1 cut(s) 995
BfrI CTTAAG 1 cut(s) 1379
BfuAI ACCTGC 1 cut(s) 330
BglI GCCNNNNNGGC 2 cut(s) 198, 644
Bme1390I CCNGG 4 cut(s) 170, 1012, 1223, 1311
BmeT110I CYCGRG 1 cut(s) 1030
BmgT120I GGNCC 3 cut(s) 157, 191, 486
BmiI GGNNCC 8 cut(s) 164, 193, 205, 289, 487, 637, 1308, 1316
BmrFI CCNGG 4 cut(s) 170, 1012, 1223, 1311
BmrI ACTGGG 1 cut(s) 70
BmsI GCATC 3 cut(s) 613, 664, 994
BmtI GCTAGC 2 cut(s) 884, 980
BmuI ACTGGG 1 cut(s) 70
BpiI GAAGAC 1 cut(s) 614
Bpu10I CCTNAGC 1 cut(s) 954
BpuEI CTTGAG 1 cut(s) 481
BpuMI CCSGG 3 cut(s) 170, 1012, 1223
BsaBI GATNNNNATC 1 cut(s) 719
BsaHI GRCGYC 2 cut(s) 234, 545
BsaJI CCNNGG 3 cut(s) 900, 1310, 1319
BsaWI WCCGGW 2 cut(s) 526, 787
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 6 cut(s) 200, 284, 328, 533, 901, 1324
Bse118I RCCGGY 2 cut(s) 197, 587
Bse1I ACTGG 2 cut(s) 76, 1172
Bse3DI GCAATG 1 cut(s) 696
Bse8I GATNNNNATC 1 cut(s) 719
BseBI CCWGG 1 cut(s) 1311
BseDI CCNNGG 3 cut(s) 900, 1310, 1319
BseGI GGATG 5 cut(s) 291, 435, 943, 1074, 1119
BseJI GATNNNNATC 1 cut(s) 719
BseLI CCNNNNNNNGG 6 cut(s) 200, 284, 328, 533, 901, 1324
BseMI GCAATG 1 cut(s) 696
BseMII CTCAG 1 cut(s) 945
BseNI ACTGG 2 cut(s) 76, 1172
BseRI GAGGAG 1 cut(s) 82
BseXI GCAGC 2 cut(s) 1019, 1064
BsgI GTGCAG 2 cut(s) 1272, 1286
Bsh1236I CGCG 4 cut(s) 123, 155, 348, 441
BshFI GGCC 9 cut(s) 5, 33, 159, 192, 224, 488, 587, 662, 1171
BshNI GGYRCC 1 cut(s) 1306
BsiHKAI GWGCWC 2 cut(s) 960, 1188
BsiHKCI CYCGRG 1 cut(s) 1030
BsiSI CCGG 8 cut(s) 160, 169, 198, 527, 588, 788, 1011, 1223
BslFI GGGAC 2 cut(s) 556, 1169
BslI CCNNNNNNNGG 6 cut(s) 200, 284, 328, 533, 901, 1324
BsmAI GTCTC 3 cut(s) 209, 233, 855
BsmBI CGTCTC 2 cut(s) 209, 233
BsmFI GGGAC 2 cut(s) 556, 1169
BsnI GGCC 9 cut(s) 5, 33, 159, 192, 224, 488, 587, 662, 1171
BsoBI CYCGRG 1 cut(s) 1030
Bsp1286I GDGCHC 2 cut(s) 960, 1188
Bsp1407I TGTACA 1 cut(s) 1293
Bsp143I GATC 5 cut(s) 714, 720, 820, 948, 1094
Bsp19I CCATGG 1 cut(s) 1319
BspANI GGCC 9 cut(s) 5, 33, 159, 192, 224, 488, 587, 662, 1171
BspCNI CTCAG 1 cut(s) 946
BspFNI CGCG 4 cut(s) 123, 155, 348, 441
BspLI GGNNCC 8 cut(s) 164, 193, 205, 289, 487, 637, 1308, 1316
BspMI ACCTGC 1 cut(s) 330
BspOI GCTAGC 2 cut(s) 884, 980
BspPI GGATC 4 cut(s) 715, 722, 943, 1102
BspT107I GGYRCC 1 cut(s) 1306
BspTI CTTAAG 1 cut(s) 1379
BsrBI CCGCTC 1 cut(s) 256
BsrDI GCAATG 1 cut(s) 696
BsrFI RCCGGY 2 cut(s) 197, 587
BsrGI TGTACA 1 cut(s) 1293
BsrI ACTGG 2 cut(s) 76, 1172
BssAI RCCGGY 2 cut(s) 197, 587
BssECI CCNNGG 3 cut(s) 900, 1310, 1319
BssMI GATC 5 cut(s) 714, 720, 820, 948, 1094
BssNI GRCGYC 2 cut(s) 234, 545
BssSI CACGAG 1 cut(s) 416
BssT1I CCWWGG 2 cut(s) 900, 1319
Bst2BI CACGAG 1 cut(s) 416
Bst2UI CCWGG 1 cut(s) 1311
Bst4CI ACNGT 2 cut(s) 847, 896
Bst6I CTCTTC 1 cut(s) 1103
BstACI GRCGYC 2 cut(s) 234, 545
BstAFI CTTAAG 1 cut(s) 1379
BstAPI GCANNNNNTGC 1 cut(s) 279
BstAUI TGTACA 1 cut(s) 1293
BstC8I GCNNGC 7 cut(s) 157, 199, 222, 275, 589, 882, 978
BstDEI CTNAG 2 cut(s) 954, 1407
BstDSI CCRYGG 1 cut(s) 1319
BstF5I GGATG 5 cut(s) 291, 435, 943, 1074, 1119
BstFNI CGCG 4 cut(s) 123, 155, 348, 441
BstH2I RGCGCY 1 cut(s) 995
BstHHI GCGC 3 cut(s) 441, 994, 1076
BstKTI GATC 5 cut(s) 717, 723, 823, 951, 1097
BstMAI GTCTC 3 cut(s) 209, 233, 855
BstMBI GATC 5 cut(s) 714, 720, 820, 948, 1094
BstNI CCWGG 1 cut(s) 1311
BstSCI CCNGG 4 cut(s) 168, 1010, 1221, 1309
BstUI CGCG 4 cut(s) 123, 155, 348, 441
BstV1I GCAGC 2 cut(s) 1019, 1064
BstV2I GAAGAC 1 cut(s) 614
BstX2I RGATCY 1 cut(s) 720
BstYI RGATCY 1 cut(s) 720
BsuRI GGCC 9 cut(s) 5, 33, 159, 192, 224, 488, 587, 662, 1171
BtgI CCRYGG 1 cut(s) 1319
BtsCI GGATG 5 cut(s) 291, 435, 943, 1074, 1119
BtsI GCAGTG 1 cut(s) 837
BtsIMutI CAGTG 2 cut(s) 837, 843
BveI ACCTGC 1 cut(s) 330
Cac8I GCNNGC 7 cut(s) 157, 199, 222, 275, 589, 882, 978
CaiI CAGNNNCTG 2 cut(s) 406, 845
CfoI GCGC 3 cut(s) 441, 994, 1076
Cfr10I RCCGGY 2 cut(s) 197, 587
Cfr13I GGNCC 3 cut(s) 157, 191, 486
CseI GACGC 5 cut(s) 112, 223, 226, 337, 412
Csp6I GTAC 3 cut(s) 691, 742, 1294
CviAII CATG 3 cut(s) 304, 824, 1320
CviQI GTAC 3 cut(s) 691, 742, 1294
DdeI CTNAG 2 cut(s) 954, 1407
DpnI GATC 5 cut(s) 716, 722, 822, 950, 1096
DpnII GATC 5 cut(s) 714, 720, 820, 948, 1094
DrdI GACNNNNNNGTC 1 cut(s) 347
DseDI GACNNNNNNGTC 1 cut(s) 347
EaeI YGGCCR 3 cut(s) 222, 660, 1169
Eam1104I CTCTTC 1 cut(s) 1103
EarI CTCTTC 1 cut(s) 1103
EciI GGCGGA 5 cut(s) 26, 37, 216, 300, 933
Eco130I CCWWGG 2 cut(s) 900, 1319
Eco32I GATATC 4 cut(s) 334, 369, 394, 1192
Eco57I CTGAAG 1 cut(s) 428
Eco88I CYCGRG 1 cut(s) 1030
EcoRII CCWGG 1 cut(s) 1309
EcoRV GATATC 4 cut(s) 334, 369, 394, 1192
EcoT14I CCWWGG 2 cut(s) 900, 1319
ErhI CCWWGG 2 cut(s) 900, 1319
Esp3I CGTCTC 2 cut(s) 209, 233
FaeI CATG 3 cut(s) 307, 827, 1323
FalI AAGNNNNNCTT 2 cut(s) 1262, 1294
FaqI GGGAC 2 cut(s) 556, 1169
FatI CATG 3 cut(s) 303, 823, 1319
FauI CCCGC 6 cut(s) 148, 202, 303, 584, 971, 973
FbaI TGATCA 1 cut(s) 820
FokI GGATG 5 cut(s) 278, 442, 930, 1081, 1126
FspBI CTAG 4 cut(s) 654, 881, 977, 995
FspI TGCGCA 1 cut(s) 1075
GlaI GCGC 3 cut(s) 440, 993, 1075
HaeII RGCGCY 1 cut(s) 995
HaeIII GGCC 9 cut(s) 5, 33, 159, 192, 224, 488, 587, 662, 1171
HapII CCGG 8 cut(s) 160, 169, 198, 527, 588, 788, 1011, 1223
HgaI GACGC 5 cut(s) 112, 223, 226, 337, 412
HhaI GCGC 3 cut(s) 441, 994, 1076
Hin1I GRCGYC 2 cut(s) 234, 545
Hin1II CATG 3 cut(s) 307, 827, 1323
Hin6I GCGC 3 cut(s) 439, 992, 1074
HinP1I GCGC 3 cut(s) 439, 992, 1074
HinfI GANTC 2 cut(s) 850, 925
HpaII CCGG 8 cut(s) 160, 169, 198, 527, 588, 788, 1011, 1223
HphI GGTGA 7 cut(s) 61, 343, 692, 777, 785, 1013, 1046
Hpy166II GTNNAC 2 cut(s) 742, 1345
Hpy188I TCNGA 2 cut(s) 948, 1099
Hpy188III TCNNGA 6 cut(s) 238, 604, 654, 707, 718, 868
Hpy8I GTNNAC 2 cut(s) 742, 1345
Hpy99I CGWCG 4 cut(s) 32, 56, 239, 550
HpyAV CCTTC 7 cut(s) 34, 966, 1031, 1059, 1118, 1195, 1288
HpyCH4III ACNGT 2 cut(s) 847, 896
HpyCH4IV ACGT 3 cut(s) 242, 381, 545
HpyCH4V TGCA 8 cut(s) 273, 303, 562, 1007, 1052, 1253, 1267, 1376
HpyF3I CTNAG 2 cut(s) 954, 1407
HpySE526I ACGT 3 cut(s) 242, 381, 545
Hsp92I GRCGYC 2 cut(s) 234, 545
Hsp92II CATG 3 cut(s) 307, 827, 1323
HspAI GCGC 3 cut(s) 439, 992, 1074
KroI GCCGGC 2 cut(s) 197, 587
KroNI GCCGGC 2 cut(s) 199, 589
Ksp22I TGATCA 1 cut(s) 820
Kzo9I GATC 5 cut(s) 714, 720, 820, 948, 1094
LmnI GCTCC 4 cut(s) 203, 287, 635, 1356
Lsp1109I GCAGC 2 cut(s) 1019, 1064
LweI GCATC 3 cut(s) 613, 664, 994
MaeI CTAG 4 cut(s) 654, 881, 977, 995
MaeII ACGT 3 cut(s) 242, 381, 545
MaeIII GTNAC 4 cut(s) 349, 783, 847, 1018
MalI GATC 5 cut(s) 716, 722, 822, 950, 1096
MbiI CCGCTC 1 cut(s) 256
MboI GATC 5 cut(s) 714, 720, 820, 948, 1094
MboII GAAGA 5 cut(s) 373, 526, 619, 1120, 1282
MflI RGATCY 1 cut(s) 720
MhlI GDGCHC 2 cut(s) 960, 1188
MlsI TGGCCA 2 cut(s) 224, 662
MluCI AATT 3 cut(s) 454, 649, 1398
MluNI TGGCCA 2 cut(s) 224, 662
MlyI GAGTC 1 cut(s) 844
MmeI TCCRAC 2 cut(s) 309, 402
Mox20I TGGCCA 2 cut(s) 224, 662
MreI CGCCGGCG 1 cut(s) 197
MroNI GCCGGC 2 cut(s) 197, 587
MscI TGGCCA 2 cut(s) 224, 662
MseI TTAA 2 cut(s) 498, 1380
MslI CAYNNNNRTG 1 cut(s) 356
Msp20I TGGCCA 2 cut(s) 224, 662
MspCI CTTAAG 1 cut(s) 1379
MspI CCGG 8 cut(s) 160, 169, 198, 527, 588, 788, 1011, 1223
MspR9I CCNGG 4 cut(s) 170, 1012, 1223, 1311
MvaI CCWGG 1 cut(s) 1311
MvnI CGCG 4 cut(s) 123, 155, 348, 441
NaeI GCCGGC 2 cut(s) 199, 589
NciI CCSGG 3 cut(s) 170, 1012, 1223
NcoI CCATGG 1 cut(s) 1319
NdeII GATC 5 cut(s) 714, 720, 820, 948, 1094
NgoMIV GCCGGC 2 cut(s) 197, 587
NheI GCTAGC 2 cut(s) 880, 976
NlaIII CATG 3 cut(s) 307, 827, 1323
NlaIV GGNNCC 8 cut(s) 164, 193, 205, 289, 487, 637, 1308, 1316
NmeAIII GCCGAG 1 cut(s) 238
NmuCI GTSAC 4 cut(s) 349, 783, 847, 1018
NsbI TGCGCA 1 cut(s) 1075
PcsI WCGNNNNNNNCGW 1 cut(s) 1223
PdiI GCCGGC 2 cut(s) 199, 589
PfeI GAWTC 1 cut(s) 925
PleI GAGTC 1 cut(s) 844
PpsI GAGTC 1 cut(s) 844
Psp6I CCWGG 1 cut(s) 1309
PspGI CCWGG 1 cut(s) 1309
PspN4I GGNNCC 8 cut(s) 164, 193, 205, 289, 487, 637, 1308, 1316
PspPI GGNCC 3 cut(s) 157, 191, 486
PstNI CAGNNNCTG 2 cut(s) 406, 845
PsuI RGATCY 1 cut(s) 720
RsaI GTAC 3 cut(s) 692, 743, 1295
RsaNI GTAC 3 cut(s) 691, 742, 1294
RseI CAYNNNNRTG 1 cut(s) 356
SaqAI TTAA 2 cut(s) 498, 1380
Sau3AI GATC 5 cut(s) 714, 720, 820, 948, 1094
Sau96I GGNCC 3 cut(s) 157, 191, 486
SchI GAGTC 1 cut(s) 844
ScrFI CCNGG 4 cut(s) 170, 1012, 1223, 1311
SduI GDGCHC 2 cut(s) 960, 1188
SfaNI GCATC 3 cut(s) 613, 664, 994
SgrAI CRCCGGYG 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 356
SmlI CTYRAG 2 cut(s) 460, 1379
SmoI CTYRAG 2 cut(s) 460, 1379
Sse9I AATT 3 cut(s) 454, 649, 1398
SspMI CTAG 4 cut(s) 654, 881, 977, 995
StyD4I CCNGG 4 cut(s) 168, 1010, 1221, 1309
StyI CCWWGG 2 cut(s) 900, 1319
TaaI ACNGT 2 cut(s) 847, 896
TaiI ACGT 3 cut(s) 245, 384, 548
TaqI TCGA 6 cut(s) 54, 237, 252, 1188, 1217, 1281
TasI AATT 3 cut(s) 454, 649, 1398
TatI WGTACW 2 cut(s) 741, 1293
TauI GCSGC 9 cut(s) 42, 134, 209, 212, 234, 285, 348, 415, 439
TfiI GAWTC 1 cut(s) 925
Tru1I TTAA 2 cut(s) 498, 1380
Tru9I TTAA 2 cut(s) 498, 1380
TscAI CASTG 2 cut(s) 837, 850
TseFI GTSAC 4 cut(s) 349, 783, 847, 1018
TseI GCWGC 2 cut(s) 1007, 1052
Tsp45I GTSAC 4 cut(s) 349, 783, 847, 1018
TspDTI ATGAA 1 cut(s) 374
TspRI CASTG 2 cut(s) 837, 850
Vha464I CTTAAG 1 cut(s) 1379
XbaI TCTAGA 1 cut(s) 653
XcmI CCANNNNNNNNNTGG 2 cut(s) 385, 1357
XspI CTAG 4 cut(s) 654, 881, 977, 995
ZraI GACGTC 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.