Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0014208

Physical Location & Seq

Genomic Coordinates Reverse (-)

15808023 .. 15810257

Gene Structure 2235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G194300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGGCTTCCATTGCTCTCAAGTCCTTCATCGGACTCCGCCAAGCCTCCGCAGAAAAGCCCCATTTCACAATCCAAGCAAAACCCATTTCTCTAAACCCTTCAATCCACCGGAGGCTCCAGGTCAATGCCGCCAAAACCAGCCCAAAAGTCACGGGTCGAAACCTCAGGGTCGCCGTCGTCGGAGGTGGCCCGGCAGGCGGCTCCGCCGCTGAGACCCTCGCCAAAGGCGGCATCGAGACGTTCCTAATCGAGCGAAAAATGGACAACTGTAAGCCCTGCGGCGGCGCAATCCCGCTCTGCATGGTGGGTGAATTTGACCTCCCATTGGACATCATCGACCGCCGGGTCACCAAGATGAAGATGATTTCGCCGTCCAATGTGGCAGTTGACATTGGTCAAACTCTGAAGCCGCACGAGTACATTGGGATGGTGAGGCGTGAGGTGCTGGACCAGTACTTGAGGAACAGGGCGAGTGAGAATGGGGCGACTGTGATAAATGGGTTGTTTCTGAAGATGGAGAAACCGGGAGATGGGGAAGCGCCGTACGTTCTGCATTACACAGAGTATGATGGGAAGGTCGGTGGGGCTGGTGTGAAGAAGAGTTTGGAGGTTGATGCTGTGATTGGAGCTGATGGAGCTAATTCTAGAGTGGCTAAGAGTATTGACGCTGGTGATTATGAGTATGCCATTGCCTTTCAGGAGAGAATCAAAATCCCTGATGATAAAATGGTGTACTATGAGAATCTTGCTGAGATGTATGTTGGTGATGATGTCTCACCGGACTTTTACGGGTGGGTGTTCCCCAAATGTGACCATGTAGCAGTTGGTACCGGCACTGTGACTCACAAAGGAGACATCAAGAAATTCCAACTTGCAACAAGAAACAGAGCCAAGGACAAGATACTAGGTGGCAAAATCCTGCGAGTGGAGGCGCATCCAATTCCCGAACACCCCCGCCCACGAAGGTTAGCAGGCAGAGTAGCACTTGTTGGTGATGCAGCTGGGTATGTGACAAAATGTTCAGGTGAAGGCATCTACTTTGCAGCAAAGAGTGGTAGGATGTGTGCAGAGGCAATAGTTGAGGGGTCGGAGAATGGAAAGAGGATGGTAAATGAGGCGGATTTAAGGAAGTACTTGGAGAAGTGGGACAAGACTTACTGGCCTACTTATAAGGTGTTGGATGTGTTGCAGAAGGTGTTTTATAGGTCGAACCCGGCGAGGGAGGCTTTTGTGGAGATGTGCGCAGATGAGTATGTGCAGAAGATGACCTTTGACAGCTATTTGTATAAGAGGGTGGTGCCTGGGAATCCTTGGGAGGATTTGAAGTTGGCAGTGAATACCATTGGGAGCCTGGTAAGGGCTAATGCACTTAGGAGGGAGATGGAAAAACTTAATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006725 GO:0006766 GO:0006775 GO:0006778 GO:0006779 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009110 GO:0009987 GO:0010189 GO:0015994 GO:0015995 GO:0016114 GO:0016491 GO:0018130 GO:0019438 GO:0019637 GO:0033013 GO:0033014 GO:0033385 GO:0033519 GO:0033521 GO:0034641 GO:0042360 GO:0042362 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0045550 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00860 ko00900 ko01100 ko01110 map00860 map00900 map01100 map01110

Pfam Domains

Protein Families

FAD_binding_3 GIDA Pyr_redox_2

Protein Analysis

467

Amino Acids

51.47

Weight (kDa)

9.08

Isoelectric Point (pI)

33.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74470
fragaria_vesca	FvH4_5g14870
malus_domestica	MD06G1193900.v1.1 MD14G1201100.v1.1
prunus_persica	Prupe.5G194300_v2.0.a1 Prupe.5G194300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0181511
rosa_laevigata	RLG00000005187
rosa_multiflora	Rmu_co8215614.1_g000001 Rmu_sc0015269.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271940
rosa_rugosa	Rorug06G0441900
rosa_samantha	Rh7AG044000 Rh7BG043100 Rh7CG044900 Rh7DG043600
rosa_wichuraiana	Rw7G003640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1170
AasI	GACNNNNNNGTC	1 cut(s)	344
Acc16I	TGCGCA	1 cut(s)	1243
Acc65I	GGTACC	1 cut(s)	827
AccB1I	GGYRCC	2 cut(s)	827, 1297
AccBSI	CCGCTC	1 cut(s)	295
AcsI	RAATTY	2 cut(s)	311, 863
AcuI	CTGAAG	2 cut(s)	425, 530
AfaI	GTAC	6 cut(s)	419, 455, 545, 734, 829, 1133
AfiI	CCNNNNNNNGG	7 cut(s)	197, 281, 325, 530, 925, 1219, 1357
AgsI	TTSAA	2 cut(s)	102, 1324
AjnI	CCWGG	3 cut(s)	117, 1300, 1350
AjuI	GAANNNNNNNTTGG	2 cut(s)	587, 619
AluBI	AGCT	4 cut(s)	629, 638, 1001, 1278
AluI	AGCT	4 cut(s)	629, 638, 1001, 1278
Alw26I	GTCTC	4 cut(s)	206, 230, 778, 846
AoxI	GGCC	2 cut(s)	187, 1160
ApeKI	GCWGC	2 cut(s)	998, 1043
ApoI	RAATTY	2 cut(s)	311, 863
Asp718I	GGTACC	1 cut(s)	827
AspLEI	GCGC	4 cut(s)	287, 541, 934, 1244
AspS9I	GGNCC	2 cut(s)	188, 448
AsuC2I	CCSGG	4 cut(s)	191, 344, 525, 1214
AsuHPI	GGTGA	8 cut(s)	320, 340, 442, 683, 768, 776, 1004, 1037
AvaII	GGWCC	1 cut(s)	448
AxyI	CCTNAGG	1 cut(s)	164
BanI	GGYRCC	2 cut(s)	827, 1297
BauI	CACGAG	1 cut(s)	413
BbvI	GCAGC	2 cut(s)	1010, 1055
BccI	CCATC	7 cut(s)	421, 508, 524, 563, 626, 1099, 1375
BceAI	ACGGC	3 cut(s)	158, 355, 526
BciT130I	CCWGG	3 cut(s)	119, 1302, 1352
BcnI	CCSGG	4 cut(s)	191, 344, 525, 1214
BcoDI	GTCTC	4 cut(s)	206, 230, 778, 846
BfaI	CTAG	2 cut(s)	645, 905
BfoI	RGCGCY	1 cut(s)	542
BglI	GCCNNNNNGGC	1 cut(s)	195
BisI	GCNGC	9 cut(s)	129, 199, 207, 229, 280, 283, 410, 999, 1044
BlsI	GCNGC	9 cut(s)	130, 200, 208, 230, 281, 284, 411, 1000, 1045
BmcAI	AGTACT	2 cut(s)	455, 1133
Bme1390I	CCNGG	7 cut(s)	119, 191, 344, 525, 1214, 1302, 1352
Bme18I	GGWCC	1 cut(s)	448
BmgT120I	GGNCC	2 cut(s)	188, 448
BmiI	GGNNCC	5 cut(s)	116, 202, 829, 1299, 1349
BmrFI	CCNGG	7 cut(s)	119, 191, 344, 525, 1214, 1302, 1352
BmsI	GCATC	5 cut(s)	240, 604, 943, 985, 1041
BoxI	GACNNNNGTC	1 cut(s)	393
BpmI	CTGGAG	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	478
BpuMI	CCSGG	4 cut(s)	191, 344, 525, 1214
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	3 cut(s)	891, 1301, 1310
BsaWI	WCCGGW	2 cut(s)	108, 778
Bsc4I	CCNNNNNNNGG	7 cut(s)	197, 281, 325, 530, 925, 1219, 1357
Bse118I	RCCGGY	1 cut(s)	830
Bse1I	ACTGG	2 cut(s)	451, 1163
Bse21I	CCTNAGG	1 cut(s)	164
Bse3DI	GCAATG	2 cut(s)	9, 687
BseBI	CCWGG	3 cut(s)	119, 1302, 1352
BseDI	CCNNGG	3 cut(s)	891, 1301, 1310
BseGI	GGATG	5 cut(s)	432, 934, 1065, 1110, 1186
BseLI	CCNNNNNNNGG	7 cut(s)	197, 281, 325, 530, 925, 1219, 1357
BseMI	GCAATG	2 cut(s)	9, 687
BseMII	CTCAG	3 cut(s)	178, 201, 741
BseNI	ACTGG	2 cut(s)	451, 1163
BseXI	GCAGC	2 cut(s)	1010, 1055
BseYI	CCCAGC	1 cut(s)	1001
BsgI	GTGCAG	2 cut(s)	1086, 1277
Bsh1285I	CGRYCG	1 cut(s)	340
BshFI	GGCC	2 cut(s)	189, 1162
BshNI	GGYRCC	2 cut(s)	827, 1297
BsiEI	CGRYCG	1 cut(s)	340
BsiSI	CCGG	7 cut(s)	109, 191, 343, 524, 779, 831, 1214
BsiWI	CGTACG	1 cut(s)	543
BslFI	GGGAC	1 cut(s)	1160
BslI	CCNNNNNNNGG	7 cut(s)	197, 281, 325, 530, 925, 1219, 1357
BsmAI	GTCTC	4 cut(s)	206, 230, 778, 846
BsmBI	CGTCTC	1 cut(s)	230
BsmFI	GGGAC	1 cut(s)	1160
BsnI	GGCC	2 cut(s)	189, 1162
Bso31I	GGTCTC	1 cut(s)	206
BspANI	GGCC	2 cut(s)	189, 1162
BspCNI	CTCAG	3 cut(s)	177, 202, 742
BspLI	GGNNCC	5 cut(s)	116, 202, 829, 1299, 1349
BspT107I	GGYRCC	2 cut(s)	827, 1297
BspTNI	GGTCTC	1 cut(s)	206
BsrBI	CCGCTC	1 cut(s)	295
BsrDI	GCAATG	2 cut(s)	9, 687
BsrFI	RCCGGY	1 cut(s)	830
BsrI	ACTGG	2 cut(s)	451, 1163
BssAI	RCCGGY	1 cut(s)	830
BssECI	CCNNGG	3 cut(s)	891, 1301, 1310
BssSI	CACGAG	1 cut(s)	413
BssT1I	CCWWGG	2 cut(s)	891, 1310
Bst2BI	CACGAG	1 cut(s)	413
Bst2UI	CCWGG	3 cut(s)	119, 1302, 1352
Bst4CI	ACNGT	3 cut(s)	269, 490, 838
Bst6I	CTCTTC	1 cut(s)	593
BstC8I	GCNNGC	2 cut(s)	196, 973
BstDEI	CTNAG	5 cut(s)	164, 210, 654, 750, 1370
BstEII	GGTNACC	1 cut(s)	346
BstF5I	GGATG	5 cut(s)	432, 934, 1065, 1110, 1186
BstH2I	RGCGCY	1 cut(s)	542
BstHHI	GCGC	4 cut(s)	287, 541, 934, 1244
BstMAI	GTCTC	4 cut(s)	206, 230, 778, 846
BstMCI	CGRYCG	1 cut(s)	340
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 195, 442, 635, 1223
BstNI	CCWGG	3 cut(s)	119, 1302, 1352
BstPAI	GACNNNNGTC	1 cut(s)	393
BstPI	GGTNACC	1 cut(s)	346
BstSCI	CCNGG	7 cut(s)	117, 189, 342, 523, 1212, 1300, 1350
BstV1I	GCAGC	2 cut(s)	1010, 1055
Bsu36I	CCTNAGG	1 cut(s)	164
BsuRI	GGCC	2 cut(s)	189, 1162
BtsCI	GGATG	5 cut(s)	432, 934, 1065, 1110, 1186
BtsI	GCAGTG	1 cut(s)	1338
BtsIMutI	CAGTG	2 cut(s)	834, 1338
Cac8I	GCNNGC	2 cut(s)	196, 973
CfoI	GCGC	4 cut(s)	287, 541, 934, 1244
Cfr10I	RCCGGY	1 cut(s)	830
Cfr13I	GGNCC	2 cut(s)	188, 448
CseI	GACGC	1 cut(s)	674
Csp6I	GTAC	6 cut(s)	418, 454, 544, 733, 828, 1132
CviAII	CATG	2 cut(s)	301, 815
CviQI	GTAC	6 cut(s)	418, 454, 544, 733, 828, 1132
DdeI	CTNAG	5 cut(s)	164, 210, 654, 750, 1370
DrdI	GACNNNNNNGTC	1 cut(s)	344
DseDI	GACNNNNNNGTC	1 cut(s)	344
Eam1104I	CTCTTC	1 cut(s)	593
EarI	CTCTTC	1 cut(s)	593
EciI	GGCGGA	3 cut(s)	26, 193, 1133
Eco130I	CCWWGG	2 cut(s)	891, 1310
Eco31I	GGTCTC	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	448
Eco57I	CTGAAG	2 cut(s)	425, 530
Eco81I	CCTNAGG	1 cut(s)	164
Eco91I	GGTNACC	1 cut(s)	346
EcoO65I	GGTNACC	1 cut(s)	346
EcoRII	CCWGG	3 cut(s)	117, 1300, 1350
EcoT14I	CCWWGG	2 cut(s)	891, 1310
ErhI	CCWWGG	2 cut(s)	891, 1310
Esp3I	CGTCTC	1 cut(s)	230
FaeI	CATG	2 cut(s)	304, 818
FalI	AAGNNNNNCTT	2 cut(s)	1253, 1285
FaqI	GGGAC	1 cut(s)	1160
FatI	CATG	2 cut(s)	300, 814
FauI	CCCGC	2 cut(s)	300, 962
Fnu4HI	GCNGC	9 cut(s)	129, 199, 207, 229, 280, 283, 410, 999, 1044
FokI	GGATG	5 cut(s)	439, 921, 1072, 1117, 1193
Fsp4HI	GCNGC	9 cut(s)	129, 199, 207, 229, 280, 283, 410, 999, 1044
FspBI	CTAG	2 cut(s)	645, 905
FspI	TGCGCA	1 cut(s)	1243
GlaI	GCGC	4 cut(s)	286, 540, 933, 1243
GluI	GCNGC	9 cut(s)	129, 199, 207, 229, 280, 283, 410, 999, 1044
GsaI	CCCAGC	1 cut(s)	1005
GsuI	CTGGAG	1 cut(s)	101
HaeII	RGCGCY	1 cut(s)	542
HaeIII	GGCC	2 cut(s)	189, 1162
HapII	CCGG	7 cut(s)	109, 191, 343, 524, 779, 831, 1214
HgaI	GACGC	1 cut(s)	674
HhaI	GCGC	4 cut(s)	287, 541, 934, 1244
Hin1II	CATG	2 cut(s)	304, 818
Hin6I	GCGC	4 cut(s)	285, 539, 932, 1242
HinP1I	GCGC	4 cut(s)	285, 539, 932, 1242
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HinfI	GANTC	5 cut(s)	33, 705, 742, 841, 1306
HpaII	CCGG	7 cut(s)	109, 191, 343, 524, 779, 831, 1214
HphI	GGTGA	8 cut(s)	320, 340, 442, 683, 768, 776, 1004, 1037
Hpy166II	GTNNAC	2 cut(s)	388, 733
Hpy188I	TCNGA	5 cut(s)	32, 182, 405, 510, 1090
Hpy188III	TCNNGA	5 cut(s)	235, 645, 698, 859, 944
Hpy8I	GTNNAC	2 cut(s)	388, 733
Hpy99I	CGWCG	2 cut(s)	179, 182
HpyAV	CCTTC	6 cut(s)	34, 108, 568, 957, 1022, 1186
HpyCH4III	ACNGT	3 cut(s)	269, 490, 838
HpyCH4IV	ACGT	2 cut(s)	239, 546
HpyCH4V	TGCA	9 cut(s)	300, 553, 875, 998, 1043, 1067, 1189, 1258, 1367
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 195, 442, 635, 1223
HpyF3I	CTNAG	5 cut(s)	164, 210, 654, 750, 1370
HpySE526I	ACGT	2 cut(s)	239, 546
Hsp92II	CATG	2 cut(s)	304, 818
HspAI	GCGC	4 cut(s)	285, 539, 932, 1242
KpnI	GGTACC	1 cut(s)	831
LmnI	GCTCC	5 cut(s)	120, 206, 626, 635, 1347
Lsp1109I	GCAGC	2 cut(s)	1010, 1055
LweI	GCATC	5 cut(s)	240, 604, 943, 985, 1041
MaeI	CTAG	2 cut(s)	645, 905
MaeII	ACGT	2 cut(s)	239, 546
MaeIII	GTNAC	5 cut(s)	148, 346, 809, 838, 1009
MbiI	CCGCTC	1 cut(s)	295
MboII	GAAGA	5 cut(s)	370, 523, 607, 610, 1273
MluCI	AATT	4 cut(s)	311, 640, 863, 939
MlyI	GAGTC	2 cut(s)	27, 835
MmeI	TCCRAC	4 cut(s)	160, 892, 1068, 1158
MseI	TTAA	2 cut(s)	1124, 1392
MslI	CAYNNNNRTG	2 cut(s)	353, 425
MspA1I	CMGCKG	2 cut(s)	209, 1001
MspI	CCGG	7 cut(s)	109, 191, 343, 524, 779, 831, 1214
MspR9I	CCNGG	7 cut(s)	119, 191, 344, 525, 1214, 1302, 1352
MvaI	CCWGG	3 cut(s)	119, 1302, 1352
MwoI	GCNNNNNNNGC	5 cut(s)	11, 195, 442, 635, 1223
NciI	CCSGG	4 cut(s)	191, 344, 525, 1214
NlaIII	CATG	2 cut(s)	304, 818
NlaIV	GGNNCC	5 cut(s)	116, 202, 829, 1299, 1349
NmuCI	GTSAC	5 cut(s)	148, 346, 809, 838, 1009
NsbI	TGCGCA	1 cut(s)	1243
PcsI	WCGNNNNNNNCGW	1 cut(s)	1214
PfeI	GAWTC	3 cut(s)	705, 742, 1306
Pfl23II	CGTACG	1 cut(s)	543
PkrI	GCNGC	9 cut(s)	130, 200, 208, 230, 281, 284, 411, 1000, 1045
PleI	GAGTC	2 cut(s)	27, 835
PpsI	GAGTC	2 cut(s)	27, 835
PshAI	GACNNNNGTC	1 cut(s)	393
PsiI	TTATAA	1 cut(s)	1170
Psp6I	CCWGG	3 cut(s)	117, 1300, 1350
PspEI	GGTNACC	1 cut(s)	346
PspFI	CCCAGC	1 cut(s)	1001
PspGI	CCWGG	3 cut(s)	117, 1300, 1350
PspLI	CGTACG	1 cut(s)	543
PspN4I	GGNNCC	5 cut(s)	116, 202, 829, 1299, 1349
PspPI	GGNCC	2 cut(s)	188, 448
PvuII	CAGCTG	1 cut(s)	1001
RsaI	GTAC	6 cut(s)	419, 455, 545, 734, 829, 1133
RsaNI	GTAC	6 cut(s)	418, 454, 544, 733, 828, 1132
RseI	CAYNNNNRTG	2 cut(s)	353, 425
SaqAI	TTAA	2 cut(s)	1124, 1392
SatI	GCNGC	9 cut(s)	129, 199, 207, 229, 280, 283, 410, 999, 1044
Sau96I	GGNCC	2 cut(s)	188, 448
ScaI	AGTACT	2 cut(s)	455, 1133
SchI	GAGTC	2 cut(s)	27, 835
ScrFI	CCNGG	7 cut(s)	119, 191, 344, 525, 1214, 1302, 1352
SfaNI	GCATC	5 cut(s)	240, 604, 943, 985, 1041
SinI	GGWCC	1 cut(s)	448
SmiMI	CAYNNNNRTG	2 cut(s)	353, 425
SmlI	CTYRAG	2 cut(s)	17, 457
SmoI	CTYRAG	2 cut(s)	17, 457
Sse9I	AATT	4 cut(s)	311, 640, 863, 939
SspMI	CTAG	2 cut(s)	645, 905
StyD4I	CCNGG	7 cut(s)	117, 189, 342, 523, 1212, 1300, 1350
StyI	CCWWGG	2 cut(s)	891, 1310
TaaI	ACNGT	3 cut(s)	269, 490, 838
TaiI	ACGT	2 cut(s)	242, 549
TaqI	TCGA	5 cut(s)	157, 234, 249, 336, 1208
TasI	AATT	4 cut(s)	311, 640, 863, 939
TatI	WGTACW	4 cut(s)	417, 453, 732, 1131
TauI	GCSGC	7 cut(s)	131, 201, 209, 231, 282, 285, 412
TfiI	GAWTC	3 cut(s)	705, 742, 1306
Tru1I	TTAA	2 cut(s)	1124, 1392
Tru9I	TTAA	2 cut(s)	1124, 1392
TscAI	CASTG	2 cut(s)	841, 1338
TseFI	GTSAC	5 cut(s)	148, 346, 809, 838, 1009
TseI	GCWGC	2 cut(s)	998, 1043
Tsp45I	GTSAC	5 cut(s)	148, 346, 809, 838, 1009
TspDTI	ATGAA	2 cut(s)	16, 371
TspRI	CASTG	2 cut(s)	841, 1338
VpaK11BI	GGWCC	1 cut(s)	448
XapI	RAATTY	2 cut(s)	311, 863
XbaI	TCTAGA	1 cut(s)	644
XcmI	CCANNNNNNNNNTGG	2 cut(s)	821, 1348
XspI	CTAG	2 cut(s)	645, 905
ZrmI	AGTACT	2 cut(s)	455, 1133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.