Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015269.1

Orthogroup ID

OG0014208

Physical Location & Seq

Genomic Coordinates Reverse (-)

2100 .. 2774

Gene Structure 675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015269.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atggtgtactacgagaacttggcagagatgtatgtaggtgatgatgtgtcgccagacttttacgggtgggtgttccccaagtgtgatcatgttgcagttggaacaggtactgtgacacacaaaggagacatcaagaagttccagctagcaacaagaaaccgagccaaggacaagattttaggcggaaagattctacgagtggaggcacatccgatccctgaacacccccgcccaagaaggctagcggggagagtagcactggtcggtgatgcagccgggtatgtcaccaaatgctcgggtgaaggtatctactttgcagcaaagagtggaaggatgtgtgccgaggccattgttgagggatcagagaatgggaagaggatgataaacgaaggggacttgaggaactatttggagaagtgggacaagacttactggccgacttacaaggtgctcgatatcttgcagaaggtgttttacaggtcgaacccggcgagagaagcgtttgtggagatgtgtgcagatgagtatgtgcagaagatgacctttgatagttatttgtacaaaagggtggtgcctgggaacccatgggaggatttgaagttggctgtgaataccattgggagcttggttagggctaatgcacttaagcaagagatggaaaaaatcagtgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006725 GO:0006766 GO:0006775 GO:0006778 GO:0006779 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009110 GO:0009987 GO:0010189 GO:0015994 GO:0015995 GO:0016114 GO:0016491 GO:0018130 GO:0019438 GO:0019637 GO:0033013 GO:0033014 GO:0033385 GO:0033519 GO:0033521 GO:0034641 GO:0042360 GO:0042362 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0045550 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:0090407 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00860 ko00900 ko01100 ko01110 map00860 map00900 map01100 map01110

Pfam Domains

Protein Families

FAD_binding_3 GIDA Pyr_redox_2

Protein Analysis

224

Amino Acids

25.35

Weight (kDa)

8.73

Isoelectric Point (pI)

27.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74470
fragaria_vesca	FvH4_5g14870
malus_domestica	MD06G1193900.v1.1 MD14G1201100.v1.1
prunus_persica	Prupe.5G194300_v2.0.a1 Prupe.5G194300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0181511
rosa_laevigata	RLG00000005187
rosa_multiflora	Rmu_co8215614.1_g000001 Rmu_sc0015269.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271940
rosa_rugosa	Rorug06G0441900
rosa_samantha	Rh7AG044000 Rh7BG043100 Rh7CG044900 Rh7DG043600
rosa_wichuraiana	Rw7G003640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	571
AciI	CCGC	3 cut(s)	183, 229, 245
AclWI	GGATC	2 cut(s)	208, 367
AcoI	YGGCCR	1 cut(s)	434
AfaI	GTAC	3 cut(s)	8, 109, 560
AfiI	CCNNNNNNNGG	2 cut(s)	166, 589
AflII	CTTAAG	1 cut(s)	644
AgsI	TTSAA	1 cut(s)	598
AjnI	CCWGG	1 cut(s)	574
AluBI	AGCT	2 cut(s)	145, 624
AluI	AGCT	2 cut(s)	145, 624
Alw21I	GWGCWC	1 cut(s)	453
Alw26I	GTCTC	1 cut(s)	120
AlwI	GGATC	2 cut(s)	208, 367
AlwNI	CAGNNNCTG	1 cut(s)	110
Ama87I	CYCGRG	1 cut(s)	295
AoxI	GGCC	2 cut(s)	345, 434
ApeKI	GCWGC	2 cut(s)	272, 317
AsuC2I	CCSGG	2 cut(s)	277, 488
AsuHPI	GGTGA	4 cut(s)	50, 277, 278, 311
AsuNHI	GCTAGC	2 cut(s)	145, 241
AvaI	CYCGRG	1 cut(s)	295
BanI	GGYRCC	1 cut(s)	571
BarI	GAAGNNNNNNTAC	2 cut(s)	458, 490
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	2 cut(s)	284, 329
BccI	CCATC	1 cut(s)	649
BciT130I	CCWGG	1 cut(s)	576
BclI	TGATCA	1 cut(s)	85
BcnI	CCSGG	2 cut(s)	277, 488
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	2 cut(s)	146, 242
BfrI	CTTAAG	1 cut(s)	644
BisI	GCNGC	2 cut(s)	273, 318
BlsI	GCNGC	2 cut(s)	274, 319
Bme1390I	CCNGG	3 cut(s)	277, 488, 576
BmeT110I	CYCGRG	1 cut(s)	295
BmiI	GGNNCC	2 cut(s)	573, 581
BmrFI	CCNGG	3 cut(s)	277, 488, 576
BmsI	GCATC	1 cut(s)	259
BmtI	GCTAGC	2 cut(s)	149, 245
BpuEI	CTTGAG	1 cut(s)	418
BpuMI	CCSGG	2 cut(s)	277, 488
BsaJI	CCNNGG	4 cut(s)	165, 342, 575, 584
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 589
Bse1I	ACTGG	2 cut(s)	264, 437
BseBI	CCWGG	1 cut(s)	576
BseDI	CCNNGG	4 cut(s)	165, 342, 575, 584
BseGI	GGATG	3 cut(s)	208, 339, 384
BseLI	CCNNNNNNNGG	2 cut(s)	166, 589
BseNI	ACTGG	2 cut(s)	264, 437
BseXI	GCAGC	2 cut(s)	284, 329
BsgI	GTGCAG	2 cut(s)	537, 551
BshFI	GGCC	2 cut(s)	347, 436
BshNI	GGYRCC	1 cut(s)	571
BsiHKAI	GWGCWC	1 cut(s)	453
BsiHKCI	CYCGRG	1 cut(s)	295
BsiSI	CCGG	2 cut(s)	276, 488
BslFI	GGGAC	2 cut(s)	407, 434
BslI	CCNNNNNNNGG	2 cut(s)	166, 589
BsmAI	GTCTC	1 cut(s)	120
BsmFI	GGGAC	2 cut(s)	407, 434
BsnI	GGCC	2 cut(s)	347, 436
BsoBI	CYCGRG	1 cut(s)	295
Bsp1286I	GDGCHC	1 cut(s)	453
Bsp1407I	TGTACA	1 cut(s)	558
Bsp143I	GATC	3 cut(s)	85, 213, 359
Bsp19I	CCATGG	1 cut(s)	584
BspACI	CCGC	3 cut(s)	183, 229, 245
BspANI	GGCC	2 cut(s)	347, 436
BspLI	GGNNCC	2 cut(s)	573, 581
BspOI	GCTAGC	2 cut(s)	149, 245
BspPI	GGATC	2 cut(s)	208, 367
BspT107I	GGYRCC	1 cut(s)	571
BspTI	CTTAAG	1 cut(s)	644
BsrGI	TGTACA	1 cut(s)	558
BsrI	ACTGG	2 cut(s)	264, 437
BssECI	CCNNGG	4 cut(s)	165, 342, 575, 584
BssMI	GATC	3 cut(s)	85, 213, 359
BssT1I	CCWWGG	2 cut(s)	165, 584
Bst2UI	CCWGG	1 cut(s)	576
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	1 cut(s)	368
BstAFI	CTTAAG	1 cut(s)	644
BstAUI	TGTACA	1 cut(s)	558
BstC8I	GCNNGC	2 cut(s)	147, 243
BstDEI	CTNAG	1 cut(s)	672
BstDSI	CCRYGG	1 cut(s)	584
BstF5I	GGATG	3 cut(s)	208, 339, 384
BstKTI	GATC	3 cut(s)	88, 216, 362
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	3 cut(s)	85, 213, 359
BstMWI	GCNNNNNNNGC	1 cut(s)	497
BstNI	CCWGG	1 cut(s)	576
BstSCI	CCNGG	3 cut(s)	275, 486, 574
BstV1I	GCAGC	2 cut(s)	284, 329
BsuRI	GGCC	2 cut(s)	347, 436
BtgI	CCRYGG	1 cut(s)	584
BtsCI	GGATG	3 cut(s)	208, 339, 384
BtsIMutI	CAGTG	2 cut(s)	257, 673
Cac8I	GCNNGC	2 cut(s)	147, 243
CaiI	CAGNNNCTG	1 cut(s)	110
Csp6I	GTAC	3 cut(s)	7, 108, 559
CviAII	CATG	2 cut(s)	89, 585
CviJI	RGCY	9 cut(s)	145, 164, 241, 275, 347, 436, 605, 624, 635
CviKI_1	RGCY	9 cut(s)	145, 164, 241, 275, 347, 436, 605, 624, 635
CviQI	GTAC	3 cut(s)	7, 108, 559
DdeI	CTNAG	1 cut(s)	672
DpnI	GATC	3 cut(s)	87, 215, 361
DpnII	GATC	3 cut(s)	85, 213, 359
EaeI	YGGCCR	1 cut(s)	434
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
EciI	GGCGGA	1 cut(s)	198
Eco130I	CCWWGG	2 cut(s)	165, 584
Eco32I	GATATC	1 cut(s)	457
Eco88I	CYCGRG	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	574
EcoRV	GATATC	1 cut(s)	457
EcoT14I	CCWWGG	2 cut(s)	165, 584
ErhI	CCWWGG	2 cut(s)	165, 584
FaeI	CATG	2 cut(s)	92, 588
FaiI	YATR	5 cut(s)	33, 90, 282, 528, 586
FalI	AAGNNNNNCTT	2 cut(s)	527, 559
FaqI	GGGAC	2 cut(s)	407, 434
FatI	CATG	2 cut(s)	88, 584
FauI	CCCGC	2 cut(s)	236, 238
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	2 cut(s)	273, 318
FokI	GGATG	3 cut(s)	195, 346, 391
Fsp4HI	GCNGC	2 cut(s)	273, 318
FspBI	CTAG	2 cut(s)	146, 242
GluI	GCNGC	2 cut(s)	273, 318
HaeIII	GGCC	2 cut(s)	347, 436
HapII	CCGG	2 cut(s)	276, 488
Hin1II	CATG	2 cut(s)	92, 588
HinfI	GANTC	1 cut(s)	190
HpaII	CCGG	2 cut(s)	276, 488
HphI	GGTGA	4 cut(s)	50, 277, 278, 311
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	2 cut(s)	213, 364
Hpy188III	TCNNGA	1 cut(s)	133
Hpy8I	GTNNAC	1 cut(s)	7
HpyAV	CCTTC	5 cut(s)	231, 296, 324, 383, 460
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	7 cut(s)	95, 272, 317, 463, 518, 532, 641
HpyF10VI	GCNNNNNNNGC	1 cut(s)	497
HpyF3I	CTNAG	1 cut(s)	672
Hsp92II	CATG	2 cut(s)	92, 588
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	3 cut(s)	85, 213, 359
LmnI	GCTCC	1 cut(s)	621
Lsp1109I	GCAGC	2 cut(s)	284, 329
LweI	GCATC	1 cut(s)	259
MaeI	CTAG	2 cut(s)	146, 242
MaeIII	GTNAC	2 cut(s)	112, 283
MalI	GATC	3 cut(s)	87, 215, 361
MboI	GATC	3 cut(s)	85, 213, 359
MboII	GAAGA	2 cut(s)	385, 547
MhlI	GDGCHC	1 cut(s)	453
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	6 cut(s)	196, 337, 349, 369, 393, 583
MseI	TTAA	1 cut(s)	645
MspCI	CTTAAG	1 cut(s)	644
MspI	CCGG	2 cut(s)	276, 488
MspR9I	CCNGG	3 cut(s)	277, 488, 576
MvaI	CCWGG	1 cut(s)	576
MwoI	GCNNNNNNNGC	1 cut(s)	497
NciI	CCSGG	2 cut(s)	277, 488
NcoI	CCATGG	1 cut(s)	584
NdeII	GATC	3 cut(s)	85, 213, 359
NheI	GCTAGC	2 cut(s)	145, 241
NlaIII	CATG	2 cut(s)	92, 588
NlaIV	GGNNCC	2 cut(s)	573, 581
NmeAIII	GCCGAG	1 cut(s)	367
NmuCI	GTSAC	2 cut(s)	112, 283
PcsI	WCGNNNNNNNCGW	1 cut(s)	488
PfeI	GAWTC	1 cut(s)	190
PkrI	GCNGC	2 cut(s)	274, 319
Psp6I	CCWGG	1 cut(s)	574
PspGI	CCWGG	1 cut(s)	574
PspN4I	GGNNCC	2 cut(s)	573, 581
PstNI	CAGNNNCTG	1 cut(s)	110
RsaI	GTAC	3 cut(s)	8, 109, 560
RsaNI	GTAC	3 cut(s)	7, 108, 559
SaqAI	TTAA	1 cut(s)	645
SatI	GCNGC	2 cut(s)	273, 318
Sau3AI	GATC	3 cut(s)	85, 213, 359
ScrFI	CCNGG	3 cut(s)	277, 488, 576
SduI	GDGCHC	1 cut(s)	453
SetI	ASST	9 cut(s)	40, 109, 147, 307, 450, 471, 482, 545, 626
SfaNI	GCATC	1 cut(s)	259
SmlI	CTYRAG	2 cut(s)	397, 644
SmoI	CTYRAG	2 cut(s)	397, 644
SsiI	CCGC	3 cut(s)	183, 229, 245
SspMI	CTAG	2 cut(s)	146, 242
StyD4I	CCNGG	3 cut(s)	275, 486, 574
StyI	CCWWGG	2 cut(s)	165, 584
TaaI	ACNGT	1 cut(s)	112
TaqI	TCGA	2 cut(s)	453, 482
TatI	WGTACW	2 cut(s)	6, 558
TfiI	GAWTC	1 cut(s)	190
Tru1I	TTAA	1 cut(s)	645
Tru9I	TTAA	1 cut(s)	645
TscAI	CASTG	2 cut(s)	264, 673
TseFI	GTSAC	2 cut(s)	112, 283
TseI	GCWGC	2 cut(s)	272, 317
Tsp45I	GTSAC	2 cut(s)	112, 283
TspRI	CASTG	2 cut(s)	264, 673
Vha464I	CTTAAG	1 cut(s)	644
XcmI	CCANNNNNNNNNTGG	1 cut(s)	622
XspI	CTAG	2 cut(s)	146, 242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.