MD14G1201100.v1.1

Geranylgeranyl diphosphate reductase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Reverse (-)
29006860 .. 29009408
2549 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1201100.v1.1.491

Sequence Viewer

Length: 1401 bp
ATGACCTCCATCGCCCTGAAATCCTTCATCGGCCTCCGCCAAACCGCCGCGGAGAAAACCCATTTCACAATGCAAGCAAAACCCATTTCTCCGAACTCCTCAAACCGCCGAACCCTCCAAGTCAAAGCCGCCAAGACCAGCCCAAAAGTCACTGGTCGAAACCTCCGCGTCGCCGTCATAGGCGGCGGACCCGCCGGCGGTGCGGCCGCAGAAACTCTAGCCAAGGGCGGCGTCGAGACATTCCTCATCGAGCGGAAGATGGACAACTGCAAGCCCTGCGGCGGGGCCATCCCGCTCTGCATGGTGGGCGAGTTCGACCTCCCGCTAGACATCATCGACCGCCGCGTCACCAAGATGAAGATGATATCTCCGTCGAACGTGGCGGTGGACATCGGGCAGACCCTGAAGCCGCACGAGTACATTGGGATGGTGAGGCGGGAGGTGCTGGACCAGTACCTGAGGAACAGGGCGAGTGAGAACGGCGCGACGGTGATAAATGGGTTGTTTTTGAAGATGGATAAGCCGGGAGATGGGGAGGCGCCGTACGTCCTGCATTACACGGAGTACGACGGGAAGGCCGGCGGCGCCGGCGTGAAGAAGACGATGGAGGTTGATGCGGTGATTGGAGCTGATGGGGCGAATTCCAGAGTGGCTAAGAGCATTGATGCTGGTGATTATGAGTATGCTATTGCCTTCCAGGAGAGAATCAAAATCCCCGACGACAAGATGGTGTACTATGAAAACCTCGCTGAGATGTATGTCGGCGATGATGTCTCACCAGACTTTTACGGGTGGGTGTTCCCGAAATGTGACCATGTAGCAGTTGGTACCGGCACTGTGACACACAAAGGAGACATCAAGAAATTCCAACTAGCAACAAGAAACAGAGCCAAGGACAAGATTCTAGGCGGCAAAATTCTCCGGGTGGAGGCGCATCCAATTCCAGAACACCCCCGGCCACGAAGGTTGGCGGGCAGAGTAGCACTCGTTGGTGATGCAGCAGGGTACGTAACAAAGTGTTCTGGTGAAGGCATCTACTTTGCAGCAAAGAGTGGCAGGATGTGTGCCGAGGCGATAGTTGAGGGGTCGGAGAATGGGAAGAGGATGGTGAATGAGGCGGACTTGAGGACGTACTTGGAGAAGTGGGACAAGACCTATTGGCCTACTTACAAGGTGTTGGATGTGTTGCAGAAGGTGTTCTATAGGTCGAACCCCGCGAGGGAAGCGTTCGTGGAGATGTGTGCGGATGAGTACGTGCAGAAGATGACGTTCGATAGCTACTTGTACAAGAGGGTGGTGCCGGGGAATCCGTGGGAGGATTTGAAGTTGGCTGTGAATACCATTGGGAGCTTGGTTAGGGCTAATGCACTCAGGAGGGAGATGGAGAAAATTACTGTATGA

Protein Analysis

467

Amino Acids

51.42

Weight (kDa)

9.08

Isoelectric Point (pI)

32.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014208)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 344
Acc65I GGTACC 1 cut(s) 827
AccB1I GGYRCC 4 cut(s) 538, 584, 827, 1297
AccBSI CCGCTC 2 cut(s) 253, 295
AccII CGCG 5 cut(s) 50, 168, 345, 485, 1217
AcoI YGGCCR 2 cut(s) 204, 956
AcsI RAATTY 3 cut(s) 640, 863, 915
AcuI CTGAAG 1 cut(s) 425
AcyI GRCGYC 3 cut(s) 231, 539, 585
AfiI CCNNNNNNNGG 6 cut(s) 197, 281, 282, 530, 928, 1219
AgsI TTSAA 2 cut(s) 511, 1324
AjnI CCWGG 1 cut(s) 696
AluBI AGCT 3 cut(s) 629, 1278, 1350
AluI AGCT 3 cut(s) 629, 1278, 1350
Alw26I GTCTC 3 cut(s) 230, 778, 846
AlwNI CAGNNNCTG 2 cut(s) 403, 457
AoxI GGCC 6 cut(s) 31, 204, 285, 576, 956, 1160
ApeKI GCWGC 2 cut(s) 998, 1043
ApoI RAATTY 3 cut(s) 640, 863, 915
Asp700I GAANNNNTTC 2 cut(s) 23, 1196
Asp718I GGTACC 1 cut(s) 827
AspLEI GCGC 4 cut(s) 485, 541, 587, 934
AspS9I GGNCC 3 cut(s) 188, 285, 448
AsuC2I CCSGG 4 cut(s) 525, 923, 955, 1302
AsuHPI GGTGA 9 cut(s) 340, 442, 502, 631, 683, 768, 1004, 1037, 1120
AvaII GGWCC 2 cut(s) 188, 448
AxyI CCTNAGG 1 cut(s) 458
BanI GGYRCC 4 cut(s) 538, 584, 827, 1297
BauI CACGAG 1 cut(s) 413
BbsI GAAGAC 1 cut(s) 605
BbvI GCAGC 2 cut(s) 1010, 1055
BceAI ACGGC 3 cut(s) 158, 496, 526
BciT130I CCWGG 1 cut(s) 698
BcnI CCSGG 4 cut(s) 525, 923, 955, 1302
BcoDI GTCTC 3 cut(s) 230, 778, 846
BfaI CTAG 4 cut(s) 218, 326, 872, 905
BfmI CTRYAG 1 cut(s) 1201
BfoI RGCGCY 2 cut(s) 542, 588
Bme1390I CCNGG 5 cut(s) 525, 698, 923, 955, 1302
Bme18I GGWCC 2 cut(s) 188, 448
BmgT120I GGNCC 3 cut(s) 188, 285, 448
BmiI GGNNCC 6 cut(s) 190, 286, 540, 586, 829, 1299
BmrFI CCNGG 5 cut(s) 525, 698, 923, 955, 1302
BmsI GCATC 5 cut(s) 604, 655, 943, 985, 1041
BpiI GAAGAC 1 cut(s) 605
BplI GAGNNNNNCTC 2 cut(s) 969, 1001
BpuEI CTTGAG 1 cut(s) 1144
BpuMI CCSGG 4 cut(s) 525, 923, 955, 1302
BsaAI YACGTR 2 cut(s) 1009, 1255
BsaHI GRCGYC 3 cut(s) 231, 539, 585
BsaJI CCNNGG 7 cut(s) 48, 222, 891, 953, 1068, 1301, 1310
BsaXI ACNNNNNCTCC 2 cut(s) 527, 557
Bsc4I CCNNNNNNNGG 6 cut(s) 197, 281, 282, 530, 928, 1219
Bse118I RCCGGY 4 cut(s) 194, 578, 587, 830
Bse1I ACTGG 2 cut(s) 157, 451
Bse21I CCTNAGG 1 cut(s) 458
BseBI CCWGG 1 cut(s) 698
BseDI CCNNGG 7 cut(s) 48, 222, 891, 953, 1068, 1301, 1310
BseGI GGATG 7 cut(s) 288, 432, 934, 1065, 1110, 1186, 1252
BseLI CCNNNNNNNGG 6 cut(s) 197, 281, 282, 530, 928, 1219
BseMII CTCAG 3 cut(s) 449, 741, 1384
BseNI ACTGG 2 cut(s) 157, 451
BseRI GAGGAG 1 cut(s) 88
BseX3I CGGCCG 1 cut(s) 204
BseXI GCAGC 2 cut(s) 1010, 1055
BsgI GTGCAG 1 cut(s) 1277
Bsh1236I CGCG 5 cut(s) 50, 168, 345, 485, 1217
Bsh1285I CGRYCG 2 cut(s) 207, 340
BshFI GGCC 6 cut(s) 33, 206, 287, 578, 958, 1162
BshNI GGYRCC 4 cut(s) 538, 584, 827, 1297
BsiEI CGRYCG 2 cut(s) 207, 340
BsiSI CCGG 8 cut(s) 195, 524, 579, 588, 831, 922, 955, 1301
BsiWI CGTACG 1 cut(s) 543
BslFI GGGAC 1 cut(s) 1160
BslI CCNNNNNNNGG 6 cut(s) 197, 281, 282, 530, 928, 1219
BsmAI GTCTC 3 cut(s) 230, 778, 846
BsmFI GGGAC 1 cut(s) 1160
BsnI GGCC 6 cut(s) 33, 206, 287, 578, 958, 1162
Bsp1407I TGTACA 1 cut(s) 1284
BspANI GGCC 6 cut(s) 33, 206, 287, 578, 958, 1162
BspCNI CTCAG 3 cut(s) 450, 742, 1383
BspFNI CGCG 5 cut(s) 50, 168, 345, 485, 1217
BspLI GGNNCC 6 cut(s) 190, 286, 540, 586, 829, 1299
BspT107I GGYRCC 4 cut(s) 538, 584, 827, 1297
BsrBI CCGCTC 2 cut(s) 253, 295
BsrFI RCCGGY 4 cut(s) 194, 578, 587, 830
BsrGI TGTACA 1 cut(s) 1284
BsrI ACTGG 2 cut(s) 157, 451
BssAI RCCGGY 4 cut(s) 194, 578, 587, 830
BssECI CCNNGG 7 cut(s) 48, 222, 891, 953, 1068, 1301, 1310
BssNI GRCGYC 3 cut(s) 231, 539, 585
BssSI CACGAG 1 cut(s) 413
BssT1I CCWWGG 2 cut(s) 222, 891
Bst2BI CACGAG 1 cut(s) 413
Bst2UI CCWGG 1 cut(s) 698
Bst4CI ACNGT 3 cut(s) 490, 838, 1396
Bst6I CTCTTC 1 cut(s) 1094
BstACI GRCGYC 3 cut(s) 231, 539, 585
BstAPI GCANNNNNTGC 1 cut(s) 276
BstAUI TGTACA 1 cut(s) 1284
BstBAI YACGTR 2 cut(s) 1009, 1255
BstC8I GCNNGC 6 cut(s) 75, 196, 272, 580, 589, 973
BstDEI CTNAG 4 cut(s) 458, 654, 750, 1370
BstDSI CCRYGG 2 cut(s) 48, 1310
BstF5I GGATG 7 cut(s) 288, 432, 934, 1065, 1110, 1186, 1252
BstFNI CGCG 5 cut(s) 50, 168, 345, 485, 1217
BstH2I RGCGCY 2 cut(s) 542, 588
BstHHI GCGC 4 cut(s) 485, 541, 587, 934
BstMAI GTCTC 3 cut(s) 230, 778, 846
BstMCI CGRYCG 2 cut(s) 207, 340
BstMWI GCNNNNNNNGC 8 cut(s) 200, 276, 306, 442, 584, 588, 635, 1223
BstNI CCWGG 1 cut(s) 698
BstSCI CCNGG 5 cut(s) 523, 696, 921, 953, 1300
BstSFI CTRYAG 1 cut(s) 1201
BstSNI TACGTA 1 cut(s) 1009
BstUI CGCG 5 cut(s) 50, 168, 345, 485, 1217
BstV1I GCAGC 2 cut(s) 1010, 1055
BstV2I GAAGAC 1 cut(s) 605
BstZI CGGCCG 1 cut(s) 204
Bsu36I CCTNAGG 1 cut(s) 458
BsuRI GGCC 6 cut(s) 33, 206, 287, 578, 958, 1162
BtgI CCRYGG 2 cut(s) 48, 1310
BtgZI GCGATG 1 cut(s) 780
BtsCI GGATG 7 cut(s) 288, 432, 934, 1065, 1110, 1186, 1252
BtsIMutI CAGTG 2 cut(s) 150, 834
Cac8I GCNNGC 6 cut(s) 75, 196, 272, 580, 589, 973
CaiI CAGNNNCTG 2 cut(s) 403, 457
CciNI GCGGCCGC 1 cut(s) 204
CfoI GCGC 4 cut(s) 485, 541, 587, 934
Cfr10I RCCGGY 4 cut(s) 194, 578, 587, 830
Cfr13I GGNCC 3 cut(s) 188, 285, 448
Cfr42I CCGCGG 1 cut(s) 51
CseI GACGC 3 cut(s) 157, 220, 334
CspCI CAANNNNNGTGG 2 cut(s) 948, 983
CviAII CATG 2 cut(s) 301, 815
DdeI CTNAG 4 cut(s) 458, 654, 750, 1370
DinI GGCGCC 2 cut(s) 540, 586
DrdI GACNNNNNNGTC 1 cut(s) 344
DseDI GACNNNNNNGTC 1 cut(s) 344
EaeI YGGCCR 2 cut(s) 204, 956
EagI CGGCCG 1 cut(s) 204
Eam1104I CTCTTC 1 cut(s) 1094
EarI CTCTTC 1 cut(s) 1094
EciI GGCGGA 3 cut(s) 26, 201, 1133
EclXI CGGCCG 1 cut(s) 204
Eco105I TACGTA 1 cut(s) 1009
Eco130I CCWWGG 2 cut(s) 222, 891
Eco32I GATATC 1 cut(s) 366
Eco47I GGWCC 2 cut(s) 188, 448
Eco52I CGGCCG 1 cut(s) 204
Eco57I CTGAAG 1 cut(s) 425
Eco81I CCTNAGG 1 cut(s) 458
EcoRI GAATTC 1 cut(s) 640
EcoRII CCWGG 1 cut(s) 696
EcoRV GATATC 1 cut(s) 366
EcoT14I CCWWGG 2 cut(s) 222, 891
EgeI GGCGCC 2 cut(s) 540, 586
EheI GGCGCC 2 cut(s) 540, 586
ErhI CCWWGG 2 cut(s) 222, 891
FaeI CATG 2 cut(s) 304, 818
FaiI YATR 9 cut(s) 179, 302, 678, 684, 738, 759, 816, 1203, 1399
FaqI GGGAC 1 cut(s) 1160
FatI CATG 2 cut(s) 300, 814
FauI CCCGC 7 cut(s) 199, 275, 300, 330, 429, 964, 1222
FokI GGATG 7 cut(s) 275, 439, 921, 1072, 1117, 1193, 1259
FspBI CTAG 4 cut(s) 218, 326, 872, 905
GlaI GCGC 4 cut(s) 484, 540, 586, 933
HaeII RGCGCY 2 cut(s) 542, 588
HaeIII GGCC 6 cut(s) 33, 206, 287, 578, 958, 1162
HapII CCGG 8 cut(s) 195, 524, 579, 588, 831, 922, 955, 1301
HgaI GACGC 3 cut(s) 157, 220, 334
HhaI GCGC 4 cut(s) 485, 541, 587, 934
Hin1I GRCGYC 3 cut(s) 231, 539, 585
Hin1II CATG 2 cut(s) 304, 818
Hin6I GCGC 4 cut(s) 483, 539, 585, 932
HinP1I GCGC 4 cut(s) 483, 539, 585, 932
HinfI GANTC 3 cut(s) 705, 901, 1306
HpaII CCGG 8 cut(s) 195, 524, 579, 588, 831, 922, 955, 1301
HphI GGTGA 9 cut(s) 340, 442, 502, 631, 683, 768, 1004, 1037, 1120
Hpy166II GTNNAC 2 cut(s) 388, 733
Hpy188I TCNGA 2 cut(s) 93, 1090
Hpy188III TCNNGA 6 cut(s) 235, 645, 802, 859, 944, 1372
Hpy8I GTNNAC 2 cut(s) 388, 733
Hpy99I CGWCG 6 cut(s) 173, 236, 376, 490, 572, 722
HpyAV CCTTC 6 cut(s) 34, 568, 703, 957, 1022, 1186
HpyCH4III ACNGT 3 cut(s) 490, 838, 1396
HpyCH4IV ACGT 6 cut(s) 378, 546, 1008, 1130, 1254, 1268
HpyCH4V TGCA 9 cut(s) 73, 270, 300, 553, 998, 1043, 1189, 1258, 1367
HpyF10VI GCNNNNNNNGC 8 cut(s) 200, 276, 306, 442, 584, 588, 635, 1223
HpyF3I CTNAG 4 cut(s) 458, 654, 750, 1370
HpySE526I ACGT 6 cut(s) 378, 546, 1008, 1130, 1254, 1268
Hsp92I GRCGYC 3 cut(s) 231, 539, 585
Hsp92II CATG 2 cut(s) 304, 818
HspAI GCGC 4 cut(s) 483, 539, 585, 932
KasI GGCGCC 2 cut(s) 538, 584
KpnI GGTACC 1 cut(s) 831
KroI GCCGGC 3 cut(s) 194, 578, 587
KroNI GCCGGC 3 cut(s) 196, 580, 589
KspI CCGCGG 1 cut(s) 51
LmnI GCTCC 2 cut(s) 626, 1347
Lsp1109I GCAGC 2 cut(s) 1010, 1055
LweI GCATC 5 cut(s) 604, 655, 943, 985, 1041
MaeI CTAG 4 cut(s) 218, 326, 872, 905
MaeII ACGT 6 cut(s) 378, 546, 1008, 1130, 1254, 1268
MaeIII GTNAC 5 cut(s) 148, 346, 809, 838, 1009
MbiI CCGCTC 2 cut(s) 253, 295
MboII GAAGA 7 cut(s) 268, 370, 523, 607, 610, 1111, 1273
MluCI AATT 5 cut(s) 640, 863, 915, 939, 1389
Mly113I GGCGCC 2 cut(s) 539, 585
MmeI TCCRAC 3 cut(s) 892, 1068, 1158
MreI CGCCGGCG 2 cut(s) 194, 587
MroNI GCCGGC 3 cut(s) 194, 578, 587
MroXI GAANNNNTTC 2 cut(s) 23, 1196
MslI CAYNNNNRTG 2 cut(s) 353, 425
MspA1I CMGCKG 1 cut(s) 50
MspI CCGG 8 cut(s) 195, 524, 579, 588, 831, 922, 955, 1301
MspR9I CCNGG 5 cut(s) 525, 698, 923, 955, 1302
MvaI CCWGG 1 cut(s) 698
MvnI CGCG 5 cut(s) 50, 168, 345, 485, 1217
MwoI GCNNNNNNNGC 8 cut(s) 200, 276, 306, 442, 584, 588, 635, 1223
NaeI GCCGGC 3 cut(s) 196, 580, 589
NarI GGCGCC 2 cut(s) 539, 585
NciI CCSGG 4 cut(s) 525, 923, 955, 1302
NgoMIV GCCGGC 3 cut(s) 194, 578, 587
NlaIII CATG 2 cut(s) 304, 818
NlaIV GGNNCC 6 cut(s) 190, 286, 540, 586, 829, 1299
NmeAIII GCCGAG 1 cut(s) 1093
NmuCI GTSAC 4 cut(s) 148, 346, 809, 838
NotI GCGGCCGC 1 cut(s) 204
PcsI WCGNNNNNNNCGW 2 cut(s) 342, 1214
PdiI GCCGGC 3 cut(s) 196, 580, 589
PdmI GAANNNNTTC 2 cut(s) 23, 1196
PfeI GAWTC 3 cut(s) 705, 901, 1306
Pfl23II CGTACG 1 cut(s) 543
PfoI TCCNGGA 1 cut(s) 696
PluTI GGCGCC 2 cut(s) 542, 588
Ppu21I YACGTR 2 cut(s) 1009, 1255
Psp6I CCWGG 1 cut(s) 696
PspGI CCWGG 1 cut(s) 696
PspLI CGTACG 1 cut(s) 543
PspN4I GGNNCC 6 cut(s) 190, 286, 540, 586, 829, 1299
PspPI GGNCC 3 cut(s) 188, 285, 448
PstNI CAGNNNCTG 2 cut(s) 403, 457
RseI CAYNNNNRTG 2 cut(s) 353, 425
SacII CCGCGG 1 cut(s) 51
Sau96I GGNCC 3 cut(s) 188, 285, 448
ScrFI CCNGG 5 cut(s) 525, 698, 923, 955, 1302
SfaNI GCATC 5 cut(s) 604, 655, 943, 985, 1041
SfcI CTRYAG 1 cut(s) 1201
SfoI GGCGCC 2 cut(s) 540, 586
Sfr303I CCGCGG 1 cut(s) 51
SgrAI CRCCGGYG 2 cut(s) 194, 587
SgrBI CCGCGG 1 cut(s) 51
SinI GGWCC 2 cut(s) 188, 448
SmiMI CAYNNNNRTG 2 cut(s) 353, 425
SmlI CTYRAG 1 cut(s) 1123
SmoI CTYRAG 1 cut(s) 1123
SnaBI TACGTA 1 cut(s) 1009
Sse9I AATT 5 cut(s) 640, 863, 915, 939, 1389
SspDI GGCGCC 2 cut(s) 538, 584
SspMI CTAG 4 cut(s) 218, 326, 872, 905
StyD4I CCNGG 5 cut(s) 523, 696, 921, 953, 1300
StyI CCWWGG 2 cut(s) 222, 891
TaaI ACNGT 3 cut(s) 490, 838, 1396
TaiI ACGT 6 cut(s) 381, 549, 1011, 1133, 1257, 1271
TaqI TCGA 8 cut(s) 157, 234, 249, 315, 336, 374, 1208, 1272
TasI AATT 5 cut(s) 640, 863, 915, 939, 1389
TatI WGTACW 3 cut(s) 417, 732, 1284
TfiI GAWTC 3 cut(s) 705, 901, 1306
TscAI CASTG 2 cut(s) 157, 841
TseFI GTSAC 4 cut(s) 148, 346, 809, 838
TseI GCWGC 2 cut(s) 998, 1043
Tsp45I GTSAC 4 cut(s) 148, 346, 809, 838
TspDTI ATGAA 3 cut(s) 16, 371, 753
TspGWI ACGGA 3 cut(s) 360, 575, 1299
TspRI CASTG 2 cut(s) 157, 841
VpaK11BI GGWCC 2 cut(s) 188, 448
XapI RAATTY 3 cut(s) 640, 863, 915
XcmI CCANNNNNNNNNTGG 2 cut(s) 821, 1348
XmnI GAANNNNTTC 2 cut(s) 23, 1196
XspI CTAG 4 cut(s) 218, 326, 872, 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.