FvH4_5g18850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016853
Physical Location & Seq
Forward (+)
10837412 .. 10838372
961 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g18850.t1

Sequence Viewer

Length: 426 bp
ATGGTGTTGCACATGGCGGTTGCAGCTTCGGTGAAACTCAAACTCCTGTCATGTACCTCCCACAGCTTGATAACCCCGATTGTCAGTGGCTTGATCTGGCCATTTGTCATCAAAGTCTCTTTTAACCTCAGGAGCGTCCGTCGAGCCTACGCCGATGTGATCCACTCCTCGAGGCTCTTCTTCTTCCAACTGAATAGGATTGTCAGAGCTTTTGATGAATATGATGTTCATGCTGATCATGATGAACCTGCAGCTATCAACAACAACAACAACAACAGCAGCAGCAGCAGCAGCAACAGCAACACTAGAATGGAACGAGCTCTTCGGCTACTACGCCAGACTGTGACGAACGGCGTCAGACGGTCATCAGAAGCCATGCAGTTGGATGAGCAAAGCATTCATGCTCTCGCCATGATTGCTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.82

Weight (kDa)

9.84

Isoelectric Point (pI)

52.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016853)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18850
malus_domestica MD04G1064000.v1.1
prunus_persica Prupe.5G069300_v2.0.a1
pyrus_communis pycom06g04880
rosa_chinensis RchiOBHm_Chr7g0203191
rosa_laevigata RLG00000003544
rosa_multiflora Rmu_co8225674.1_g000001 Rmu_sc0010754.1_g000015
rosa_roxburghii Rroxscaffold_3G00253980
rosa_rugosa Rorug07G0075000
rosa_samantha Rh7AG204400 Rh7BG203600 Rh7CG215300 Rh7DG210900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 169
Acc36I ACCTGC 1 cut(s) 256
AciI CCGC 1 cut(s) 17
AclWI GGATC 1 cut(s) 154
AcoI YGGCCR 1 cut(s) 98
AcyI GRCGYC 1 cut(s) 354
AfaI GTAC 1 cut(s) 55
AluBI AGCT 5 cut(s) 26, 66, 209, 254, 320
AluI AGCT 5 cut(s) 26, 66, 209, 254, 320
Alw21I GWGCWC 1 cut(s) 322
Alw26I GTCTC 1 cut(s) 121
AlwI GGATC 1 cut(s) 154
Ama87I CYCGRG 1 cut(s) 169
AoxI GGCC 1 cut(s) 98
ApeKI GCWGC 7 cut(s) 23, 251, 279, 282, 285, 288, 291
AsuHPI GGTGA 1 cut(s) 43
AvaI CYCGRG 1 cut(s) 169
AxyI CCTNAGG 1 cut(s) 128
BalI TGGCCA 1 cut(s) 100
BanII GRGCYC 1 cut(s) 322
Bbv12I GWGCWC 1 cut(s) 322
BbvI GCAGC 7 cut(s) 35, 263, 291, 294, 297, 300, 303
BceAI ACGGC 1 cut(s) 367
BclI TGATCA 1 cut(s) 235
BcoDI GTCTC 1 cut(s) 121
BfaI CTAG 1 cut(s) 306
BfmI CTRYAG 1 cut(s) 249
BfuAI ACCTGC 1 cut(s) 256
BisI GCNGC 7 cut(s) 24, 252, 280, 283, 286, 289, 292
BlsI GCNGC 7 cut(s) 25, 253, 281, 284, 287, 290, 293
BmeT110I CYCGRG 1 cut(s) 169
BsaHI GRCGYC 1 cut(s) 354
BsaXI ACNNNNNCTCC 4 cut(s) 27, 57, 124, 154
Bse21I CCTNAGG 1 cut(s) 128
BseGI GGATG 1 cut(s) 391
BseMII CTCAG 1 cut(s) 142
BseRI GAGGAG 1 cut(s) 157
BseXI GCAGC 7 cut(s) 35, 263, 291, 294, 297, 300, 303
BshFI GGCC 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 322
BsiHKCI CYCGRG 1 cut(s) 169
BsmAI GTCTC 1 cut(s) 121
BsmI GAATGC 1 cut(s) 396
BsnI GGCC 1 cut(s) 100
BsoBI CYCGRG 1 cut(s) 169
Bsp1286I GDGCHC 1 cut(s) 322
Bsp143I GATC 3 cut(s) 93, 159, 235
BspACI CCGC 1 cut(s) 17
BspANI GGCC 1 cut(s) 100
BspCNI CTCAG 1 cut(s) 141
BspHI TCATGA 1 cut(s) 238
BspMAI CTGCAG 1 cut(s) 253
BspMI ACCTGC 1 cut(s) 256
BspPI GGATC 1 cut(s) 154
BspQI GCTCTTC 2 cut(s) 182, 327
BssMI GATC 3 cut(s) 93, 159, 235
BssNI GRCGYC 1 cut(s) 354
Bst4CI ACNGT 2 cut(s) 343, 363
Bst6I CTCTTC 2 cut(s) 182, 327
BstACI GRCGYC 1 cut(s) 354
BstDEI CTNAG 1 cut(s) 128
BstF5I GGATG 1 cut(s) 391
BstKTI GATC 3 cut(s) 96, 162, 238
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 3 cut(s) 93, 159, 235
BstMWI GCNNNNNNNGC 6 cut(s) 23, 285, 288, 291, 297, 416
BstSFI CTRYAG 1 cut(s) 249
BstV1I GCAGC 7 cut(s) 35, 263, 291, 294, 297, 300, 303
BstXI CCANNNNNNTGG 1 cut(s) 382
Bsu36I CCTNAGG 1 cut(s) 128
BsuRI GGCC 1 cut(s) 100
BtsCI GGATG 1 cut(s) 391
BtsIMutI CAGTG 1 cut(s) 91
BveI ACCTGC 1 cut(s) 256
CciI TCATGA 1 cut(s) 238
CseI GACGC 2 cut(s) 124, 343
Csp6I GTAC 1 cut(s) 54
CviAII CATG 7 cut(s) 13, 51, 230, 239, 376, 401, 412
CviQI GTAC 1 cut(s) 54
DdeI CTNAG 1 cut(s) 128
DpnI GATC 3 cut(s) 95, 161, 237
DpnII GATC 3 cut(s) 93, 159, 235
EaeI YGGCCR 1 cut(s) 98
Eam1104I CTCTTC 2 cut(s) 182, 327
EarI CTCTTC 2 cut(s) 182, 327
Ecl136II GAGCTC 1 cut(s) 320
Eco24I GRGCYC 1 cut(s) 322
Eco53kI GAGCTC 1 cut(s) 320
Eco81I CCTNAGG 1 cut(s) 128
Eco88I CYCGRG 1 cut(s) 169
EcoICRI GAGCTC 1 cut(s) 320
EcoT38I GRGCYC 1 cut(s) 322
FaeI CATG 7 cut(s) 16, 54, 233, 242, 379, 404, 415
FaiI YATR 8 cut(s) 14, 52, 222, 231, 240, 377, 402, 413
FatI CATG 7 cut(s) 12, 50, 229, 238, 375, 400, 411
FbaI TGATCA 1 cut(s) 235
Fnu4HI GCNGC 7 cut(s) 24, 252, 280, 283, 286, 289, 292
FokI GGATG 1 cut(s) 398
FriOI GRGCYC 1 cut(s) 322
Fsp4HI GCNGC 7 cut(s) 24, 252, 280, 283, 286, 289, 292
FspBI CTAG 1 cut(s) 306
GluI GCNGC 7 cut(s) 24, 252, 280, 283, 286, 289, 292
HaeIII GGCC 1 cut(s) 100
HgaI GACGC 2 cut(s) 124, 343
Hin1I GRCGYC 1 cut(s) 354
Hin1II CATG 7 cut(s) 16, 54, 233, 242, 379, 404, 415
HphI GGTGA 1 cut(s) 43
Hpy188I TCNGA 3 cut(s) 206, 359, 370
Hpy188III TCNNGA 2 cut(s) 130, 239
Hpy99I CGWCG 1 cut(s) 144
HpyCH4III ACNGT 2 cut(s) 343, 363
HpyCH4V TGCA 4 cut(s) 10, 23, 251, 379
HpyF10VI GCNNNNNNNGC 6 cut(s) 23, 285, 288, 291, 297, 416
HpyF3I CTNAG 1 cut(s) 128
Hsp92I GRCGYC 1 cut(s) 354
Hsp92II CATG 7 cut(s) 16, 54, 233, 242, 379, 404, 415
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 3 cut(s) 93, 159, 235
LguI GCTCTTC 2 cut(s) 182, 327
LmnI GCTCC 1 cut(s) 132
LpnPI CCDG 5 cut(s) 59, 82, 115, 261, 350
Lsp1109I GCAGC 7 cut(s) 35, 263, 291, 294, 297, 300, 303
MaeI CTAG 1 cut(s) 306
MaeIII GTNAC 1 cut(s) 343
MalI GATC 3 cut(s) 95, 161, 237
MboI GATC 3 cut(s) 93, 159, 235
MboII GAAGA 4 cut(s) 169, 172, 175, 314
MhlI GDGCHC 1 cut(s) 322
MlsI TGGCCA 1 cut(s) 100
MluNI TGGCCA 1 cut(s) 100
MmeI TCCRAC 2 cut(s) 211, 363
MnlI CCTC 4 cut(s) 67, 137, 165, 178
Mox20I TGGCCA 1 cut(s) 100
MscI TGGCCA 1 cut(s) 100
MseI TTAA 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 308
Msp20I TGGCCA 1 cut(s) 100
Mva1269I GAATGC 1 cut(s) 396
MwoI GCNNNNNNNGC 6 cut(s) 23, 285, 288, 291, 297, 416
NdeII GATC 3 cut(s) 93, 159, 235
NlaIII CATG 7 cut(s) 16, 54, 233, 242, 379, 404, 415
NmuCI GTSAC 1 cut(s) 343
PaeR7I CTCGAG 1 cut(s) 169
PagI TCATGA 1 cut(s) 238
PciSI GCTCTTC 2 cut(s) 182, 327
PctI GAATGC 1 cut(s) 396
PkrI GCNGC 7 cut(s) 25, 253, 281, 284, 287, 290, 293
Psp124BI GAGCTC 1 cut(s) 322
PspXI VCTCGAGB 1 cut(s) 169
PstI CTGCAG 1 cut(s) 253
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
RseI CAYNNNNRTG 1 cut(s) 308
SacI GAGCTC 1 cut(s) 322
SapI GCTCTTC 2 cut(s) 182, 327
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 7 cut(s) 24, 252, 280, 283, 286, 289, 292
Sau3AI GATC 3 cut(s) 93, 159, 235
SduI GDGCHC 1 cut(s) 322
SetI ASST 8 cut(s) 28, 59, 68, 129, 211, 250, 256, 322
SfcI CTRYAG 1 cut(s) 249
Sfr274I CTCGAG 1 cut(s) 169
SlaI CTCGAG 1 cut(s) 169
SmiMI CAYNNNNRTG 1 cut(s) 308
SmlI CTYRAG 1 cut(s) 169
SmoI CTYRAG 1 cut(s) 169
SsiI CCGC 1 cut(s) 17
SspMI CTAG 1 cut(s) 306
SstI GAGCTC 1 cut(s) 322
TaaI ACNGT 2 cut(s) 343, 363
TaqI TCGA 2 cut(s) 142, 170
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 1 cut(s) 91
TseFI GTSAC 1 cut(s) 343
TseI GCWGC 7 cut(s) 23, 251, 279, 282, 285, 288, 291
Tsp45I GTSAC 1 cut(s) 343
TspDTI ATGAA 4 cut(s) 218, 231, 258, 389
TspGWI ACGGA 1 cut(s) 128
TspRI CASTG 1 cut(s) 91
XhoI CTCGAG 1 cut(s) 169
XspI CTAG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.