pycom06g04880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0016853
Physical Location & Seq
Forward (+)
6538695 .. 6539243
549 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g04880.2

Sequence Viewer

Length: 366 bp
ATGCTGCTGATAAAGGCAGTTGTAGCACTCATCAAACTCAAAGTCGTCACCATGTCCACCTCCCACAGCAGCGCTGTGCTGACTGGGTTGATCTGGCCGTTTGTCCTCAAACTCTCTTTCAGCTTCAGGCTTGTTCATCAGACCTACTCCGAAATCATCCATGCATGGAGGCTCTTCTTTTTCCAGCTCAATCAGATTGCAGCCGTTGATTTGGATGACGATGCAAATCATCATCATCGGCAGCCAGCTACTAGGCTGCAACGAACTCTGAGGCTGCTGCAACGGACTGTGACCCAAGAAAGACAATCAGAGGCCTTGGAATTGGATGAGCAGAGCATTCATGCCCTCACCATGGTTGCACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.93

Weight (kDa)

9.39

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016853)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18850
malus_domestica MD04G1064000.v1.1
prunus_persica Prupe.5G069300_v2.0.a1
pyrus_communis pycom06g04880
rosa_chinensis RchiOBHm_Chr7g0203191
rosa_laevigata RLG00000003544
rosa_multiflora Rmu_co8225674.1_g000001 Rmu_sc0010754.1_g000015
rosa_roxburghii Rroxscaffold_3G00253980
rosa_rugosa Rorug07G0075000
rosa_samantha Rh7AG204400 Rh7BG203600 Rh7CG215300 Rh7DG210900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 95
AcuI CTGAAG 1 cut(s) 109
AfeI AGCGCT 1 cut(s) 73
AfiI CCNNNNNNNGG 1 cut(s) 352
AluBI AGCT 3 cut(s) 123, 187, 248
AluI AGCT 3 cut(s) 123, 187, 248
Aor51HI AGCGCT 1 cut(s) 73
AoxI GGCC 2 cut(s) 95, 312
ApeKI GCWGC 7 cut(s) 4, 69, 200, 241, 256, 274, 277
ArsI GACNNNNNNTTYG 2 cut(s) 27, 59
AspLEI GCGC 1 cut(s) 74
AsuHPI GGTGA 2 cut(s) 40, 340
BbvI GCAGC 6 cut(s) 81, 212, 243, 253, 261, 264
BceAI ACGGC 2 cut(s) 82, 188
BfaI CTAG 1 cut(s) 252
BfoI RGCGCY 1 cut(s) 75
BisI GCNGC 7 cut(s) 5, 70, 201, 242, 257, 275, 278
BlsI GCNGC 7 cut(s) 6, 71, 202, 243, 258, 276, 279
BmrI ACTGGG 1 cut(s) 93
BmsI GCATC 1 cut(s) 211
BmuI ACTGGG 1 cut(s) 93
BsaBI GATNNNNATC 1 cut(s) 225
BsaJI CCNNGG 2 cut(s) 315, 351
Bsc4I CCNNNNNNNGG 1 cut(s) 352
Bse1I ACTGG 1 cut(s) 88
Bse8I GATNNNNATC 1 cut(s) 225
BseDI CCNNGG 2 cut(s) 315, 351
BseGI GGATG 3 cut(s) 156, 220, 331
BseJI GATNNNNATC 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 352
BseMII CTCAG 1 cut(s) 260
BseNI ACTGG 1 cut(s) 88
BseXI GCAGC 6 cut(s) 81, 212, 243, 253, 261, 264
BshFI GGCC 2 cut(s) 97, 314
BslI CCNNNNNNNGG 1 cut(s) 352
BsmI GAATGC 1 cut(s) 336
BsnI GGCC 2 cut(s) 97, 314
Bsp143I GATC 1 cut(s) 90
Bsp19I CCATGG 1 cut(s) 351
BspANI GGCC 2 cut(s) 97, 314
BspCNI CTCAG 1 cut(s) 261
BspQI GCTCTTC 1 cut(s) 179
BsrI ACTGG 1 cut(s) 88
BssECI CCNNGG 2 cut(s) 315, 351
BssMI GATC 1 cut(s) 90
BssT1I CCWWGG 2 cut(s) 315, 351
Bst4CI ACNGT 1 cut(s) 289
Bst6I CTCTTC 1 cut(s) 179
BstC8I GCNNGC 1 cut(s) 246
BstDEI CTNAG 1 cut(s) 269
BstDSI CCRYGG 1 cut(s) 351
BstF5I GGATG 3 cut(s) 156, 220, 331
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstV1I GCAGC 6 cut(s) 81, 212, 243, 253, 261, 264
BsuRI GGCC 2 cut(s) 97, 314
BtgI CCRYGG 1 cut(s) 351
BtsCI GGATG 3 cut(s) 156, 220, 331
Cac8I GCNNGC 1 cut(s) 246
CfoI GCGC 1 cut(s) 74
CviAII CATG 5 cut(s) 52, 161, 165, 341, 352
DdeI CTNAG 1 cut(s) 269
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
EaeI YGGCCR 1 cut(s) 95
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
Eco130I CCWWGG 2 cut(s) 315, 351
Eco147I AGGCCT 1 cut(s) 314
Eco47III AGCGCT 1 cut(s) 73
Eco57I CTGAAG 1 cut(s) 109
EcoT14I CCWWGG 2 cut(s) 315, 351
EcoT22I ATGCAT 1 cut(s) 166
ErhI CCWWGG 2 cut(s) 315, 351
FaeI CATG 5 cut(s) 55, 164, 168, 344, 355
FaiI YATR 5 cut(s) 53, 162, 166, 342, 353
FatI CATG 5 cut(s) 51, 160, 164, 340, 351
Fnu4HI GCNGC 7 cut(s) 5, 70, 201, 242, 257, 275, 278
FokI GGATG 3 cut(s) 143, 227, 338
Fsp4HI GCNGC 7 cut(s) 5, 70, 201, 242, 257, 275, 278
FspBI CTAG 1 cut(s) 252
GlaI GCGC 1 cut(s) 73
GluI GCNGC 7 cut(s) 5, 70, 201, 242, 257, 275, 278
HaeII RGCGCY 1 cut(s) 75
HaeIII GGCC 2 cut(s) 97, 314
HhaI GCGC 1 cut(s) 74
Hin1II CATG 5 cut(s) 55, 164, 168, 344, 355
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HphI GGTGA 2 cut(s) 40, 340
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 5 cut(s) 141, 151, 195, 270, 310
Hpy8I GTNNAC 1 cut(s) 57
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4V TGCA 6 cut(s) 164, 200, 224, 259, 280, 359
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 1 cut(s) 269
Hsp92II CATG 5 cut(s) 55, 164, 168, 344, 355
HspAI GCGC 1 cut(s) 72
Kzo9I GATC 1 cut(s) 90
LguI GCTCTTC 1 cut(s) 179
LpnPI CCDG 5 cut(s) 69, 79, 112, 197, 258
Lsp1109I GCAGC 6 cut(s) 81, 212, 243, 253, 261, 264
LweI GCATC 1 cut(s) 211
MaeI CTAG 1 cut(s) 252
MaeIII GTNAC 2 cut(s) 46, 289
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MboII GAAGA 1 cut(s) 166
MluCI AATT 1 cut(s) 320
MnlI CCTC 6 cut(s) 70, 116, 162, 264, 304, 356
Mph1103I ATGCAT 1 cut(s) 166
Mva1269I GAATGC 1 cut(s) 336
MwoI GCNNNNNNNGC 1 cut(s) 23
NcoI CCATGG 1 cut(s) 351
NdeII GATC 1 cut(s) 90
NlaIII CATG 5 cut(s) 55, 164, 168, 344, 355
NmuCI GTSAC 2 cut(s) 46, 289
NsiI ATGCAT 1 cut(s) 166
PceI AGGCCT 1 cut(s) 314
PciSI GCTCTTC 1 cut(s) 179
PctI GAATGC 1 cut(s) 336
PkrI GCNGC 7 cut(s) 6, 71, 202, 243, 258, 276, 279
SapI GCTCTTC 1 cut(s) 179
SatI GCNGC 7 cut(s) 5, 70, 201, 242, 257, 275, 278
Sau3AI GATC 1 cut(s) 90
SetI ASST 5 cut(s) 62, 125, 146, 189, 250
SfaNI GCATC 1 cut(s) 211
Sse9I AATT 1 cut(s) 320
SseBI AGGCCT 1 cut(s) 314
SspMI CTAG 1 cut(s) 252
StuI AGGCCT 1 cut(s) 314
StyI CCWWGG 2 cut(s) 315, 351
TaaI ACNGT 1 cut(s) 289
TasI AATT 1 cut(s) 320
TseFI GTSAC 2 cut(s) 46, 289
TseI GCWGC 7 cut(s) 4, 69, 200, 241, 256, 274, 277
Tsp45I GTSAC 2 cut(s) 46, 289
TspDTI ATGAA 2 cut(s) 125, 329
TspGWI ACGGA 1 cut(s) 298
XspI CTAG 1 cut(s) 252
Zsp2I ATGCAT 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.