Prupe.5G069300_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
8339252 .. 8339883
632 bp
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UTR
Exon/CDS
Intron
Prupe.5G069300.1

Sequence Viewer

Length: 375 bp
ATGGGTTTTCACACGGCAATTGTAGCAACCACATTGAAACTCAAAGCCCTCTCCACCTCTCACAGCACCCTAATAACCCCACTGCTCACTGGCTTGATCTGCCCTTTTGTGCTCAAGCTCTCTTTCAGCTTCAGCCTTGTTCATCGAACATACTCTGATTTCATCCATCAGTCGAGGCTCTTCTTCTTCCAGCTCAATGAGATTGCAGCAGCTGACAATTTTGATGATGATCTTCAACAGCAGCAGCCAGCTGCTACTAGATTCCTGCAGCGAGCTCTGAGGCTACTGCAACAGGCTGTGACCCATCAAAGAAACTCACAGGCATCGGAATTGGATGAGCAGAGCATCCATGACCTCTCACTGGTTGCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.97

Weight (kDa)

6.57

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016853)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 115
AfiI CCNNNNNNNGG 1 cut(s) 361
AgsI TTSAA 2 cut(s) 37, 236
AluBI AGCT 6 cut(s) 118, 129, 193, 212, 251, 275
AluI AGCT 6 cut(s) 118, 129, 193, 212, 251, 275
Alw21I GWGCWC 2 cut(s) 114, 277
AlwNI CAGNNNCTG 1 cut(s) 212
ApeKI GCWGC 6 cut(s) 206, 209, 241, 244, 251, 268
BanII GRGCYC 1 cut(s) 277
Bbv12I GWGCWC 2 cut(s) 114, 277
BbvI GCAGC 6 cut(s) 218, 221, 238, 253, 256, 280
BccI CCATC 2 cut(s) 174, 312
BceAI ACGGC 1 cut(s) 30
BfaI CTAG 1 cut(s) 258
BfmI CTRYAG 1 cut(s) 266
BisI GCNGC 6 cut(s) 207, 210, 242, 245, 252, 269
BlsI GCNGC 6 cut(s) 208, 211, 243, 246, 253, 270
BmsI GCATC 2 cut(s) 332, 354
BpuEI CTTGAG 1 cut(s) 98
BsaBI GATNNNNATC 1 cut(s) 228
Bsc4I CCNNNNNNNGG 1 cut(s) 361
Bse1I ACTGG 2 cut(s) 94, 366
Bse8I GATNNNNATC 1 cut(s) 228
BseGI GGATG 3 cut(s) 162, 340, 345
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 1 cut(s) 361
BseMII CTCAG 1 cut(s) 269
BseNI ACTGG 2 cut(s) 94, 366
BseXI GCAGC 6 cut(s) 218, 221, 238, 253, 256, 280
BsiHKAI GWGCWC 2 cut(s) 114, 277
BslI CCNNNNNNNGG 1 cut(s) 361
Bsp1286I GDGCHC 2 cut(s) 114, 277
Bsp143I GATC 2 cut(s) 96, 229
BspCNI CTCAG 1 cut(s) 270
BspMAI CTGCAG 1 cut(s) 270
BspQI GCTCTTC 1 cut(s) 185
BsrI ACTGG 2 cut(s) 94, 366
BssMI GATC 2 cut(s) 96, 229
Bst6I CTCTTC 1 cut(s) 185
BstC8I GCNNGC 2 cut(s) 249, 273
BstDEI CTNAG 1 cut(s) 278
BstF5I GGATG 3 cut(s) 162, 340, 345
BstKTI GATC 2 cut(s) 99, 232
BstMBI GATC 2 cut(s) 96, 229
BstMWI GCNNNNNNNGC 2 cut(s) 23, 99
BstSFI CTRYAG 1 cut(s) 266
BstV1I GCAGC 6 cut(s) 218, 221, 238, 253, 256, 280
BtsCI GGATG 3 cut(s) 162, 340, 345
BtsI GCAGTG 1 cut(s) 80
BtsIMutI CAGTG 3 cut(s) 80, 87, 359
Cac8I GCNNGC 2 cut(s) 249, 273
CaiI CAGNNNCTG 1 cut(s) 212
CviAII CATG 1 cut(s) 350
DdeI CTNAG 1 cut(s) 278
DpnI GATC 2 cut(s) 98, 231
DpnII GATC 2 cut(s) 96, 229
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
Ecl136II GAGCTC 1 cut(s) 275
Eco24I GRGCYC 1 cut(s) 277
Eco53kI GAGCTC 1 cut(s) 275
Eco57I CTGAAG 1 cut(s) 115
EcoICRI GAGCTC 1 cut(s) 275
EcoT38I GRGCYC 1 cut(s) 277
FaeI CATG 1 cut(s) 353
FaiI YATR 2 cut(s) 151, 351
FatI CATG 1 cut(s) 349
Fnu4HI GCNGC 6 cut(s) 207, 210, 242, 245, 252, 269
FokI GGATG 3 cut(s) 149, 332, 347
FriOI GRGCYC 1 cut(s) 277
Fsp4HI GCNGC 6 cut(s) 207, 210, 242, 245, 252, 269
FspBI CTAG 1 cut(s) 258
GluI GCNGC 6 cut(s) 207, 210, 242, 245, 252, 269
Hin1II CATG 1 cut(s) 353
HinfI GANTC 1 cut(s) 261
Hpy188I TCNGA 3 cut(s) 157, 279, 328
HpyCH4V TGCA 3 cut(s) 206, 268, 289
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 99
HpyF3I CTNAG 1 cut(s) 278
Hsp92II CATG 1 cut(s) 353
Kzo9I GATC 2 cut(s) 96, 229
LguI GCTCTTC 1 cut(s) 185
LpnPI CCDG 7 cut(s) 75, 203, 261, 278, 278, 305, 347
Lsp1109I GCAGC 6 cut(s) 218, 221, 238, 253, 256, 280
LweI GCATC 2 cut(s) 332, 354
MaeI CTAG 1 cut(s) 258
MaeIII GTNAC 1 cut(s) 298
MalI GATC 2 cut(s) 98, 231
MboI GATC 2 cut(s) 96, 229
MboII GAAGA 4 cut(s) 172, 175, 178, 224
MfeI CAATTG 1 cut(s) 18
MhlI GDGCHC 2 cut(s) 114, 277
MluCI AATT 3 cut(s) 18, 217, 329
MnlI CCTC 5 cut(s) 59, 67, 168, 273, 365
MspA1I CMGCKG 2 cut(s) 212, 251
MunI CAATTG 1 cut(s) 18
MwoI GCNNNNNNNGC 2 cut(s) 23, 99
NdeII GATC 2 cut(s) 96, 229
NlaIII CATG 1 cut(s) 353
NmuCI GTSAC 1 cut(s) 298
PciSI GCTCTTC 1 cut(s) 185
PfeI GAWTC 1 cut(s) 261
PkrI GCNGC 6 cut(s) 208, 211, 243, 246, 253, 270
Psp124BI GAGCTC 1 cut(s) 277
PstI CTGCAG 1 cut(s) 270
PstNI CAGNNNCTG 1 cut(s) 212
PvuII CAGCTG 2 cut(s) 212, 251
SacI GAGCTC 1 cut(s) 277
SapI GCTCTTC 1 cut(s) 185
SatI GCNGC 6 cut(s) 207, 210, 242, 245, 252, 269
Sau3AI GATC 2 cut(s) 96, 229
SduI GDGCHC 2 cut(s) 114, 277
SetI ASST 8 cut(s) 59, 120, 131, 195, 214, 253, 277, 357
SfaNI GCATC 2 cut(s) 332, 354
SfcI CTRYAG 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 3 cut(s) 18, 217, 329
SspMI CTAG 1 cut(s) 258
SstI GAGCTC 1 cut(s) 277
TaqI TCGA 2 cut(s) 145, 173
TasI AATT 3 cut(s) 18, 217, 329
TfiI GAWTC 1 cut(s) 261
TscAI CASTG 3 cut(s) 87, 94, 366
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 6 cut(s) 206, 209, 241, 244, 251, 268
Tsp45I GTSAC 1 cut(s) 298
TspDTI ATGAA 2 cut(s) 131, 151
TspRI CASTG 3 cut(s) 87, 94, 366
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.