RLG00000003544

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0016853
Physical Location & Seq
Reverse (-)
49849976 .. 49850380
405 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003544

Sequence Viewer

Length: 405 bp
ATGGTGTTGCACATGGCAGTTGTAGCTTCTGTGAAACTCAAACTCCTGTCATGTACCTCCCACAGCCTAATAACCCAGGTTGTCAGTGGCTTGATCTGGCCATTTGCCATCAAAGTCTCTTTCAGCCTCAGGAGCGTTCGTCGAGCCTACGCCGATGTGATCCATTCCTCTAGGCTCTTCTTCTTCCAACTGAATCAGATAGTCAGAGCTTTTGATGAACATGATGTTCGTGCTGATCATGATGAACCTGCAGCTATCATTGGCAACAACAACAACAACAACACTAGATTGGAACGAGCTCTTCGGCTAGTATGCCGGACTGTGACGAACGGCTTCAGACGGTCATCAGAAGCCTTGCAGTTGGATGAGCAAAGCATTCATGCTCTCGCCATGATTTCTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.1

Weight (kDa)

9.68

Isoelectric Point (pI)

43.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016853)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18850
malus_domestica MD04G1064000.v1.1
prunus_persica Prupe.5G069300_v2.0.a1
pyrus_communis pycom06g04880
rosa_chinensis RchiOBHm_Chr7g0203191
rosa_laevigata RLG00000003544
rosa_multiflora Rmu_co8225674.1_g000001 Rmu_sc0010754.1_g000015
rosa_roxburghii Rroxscaffold_3G00253980
rosa_rugosa Rorug07G0075000
rosa_samantha Rh7AG204400 Rh7BG203600 Rh7CG215300 Rh7DG210900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 256
AclWI GGATC 1 cut(s) 154
AcoI YGGCCR 1 cut(s) 98
AcuI CTGAAG 1 cut(s) 319
AfaI GTAC 1 cut(s) 55
AjnI CCWGG 1 cut(s) 75
AluBI AGCT 4 cut(s) 26, 209, 254, 299
AluI AGCT 4 cut(s) 26, 209, 254, 299
Alw21I GWGCWC 1 cut(s) 301
Alw26I GTCTC 1 cut(s) 121
AlwI GGATC 1 cut(s) 154
AoxI GGCC 1 cut(s) 98
ApeKI GCWGC 1 cut(s) 251
Asp700I GAANNNNTTC 1 cut(s) 332
AxyI CCTNAGG 1 cut(s) 128
BalI TGGCCA 1 cut(s) 100
BanII GRGCYC 1 cut(s) 301
Bbv12I GWGCWC 1 cut(s) 301
BbvI GCAGC 1 cut(s) 263
BccI CCATC 1 cut(s) 116
BceAI ACGGC 1 cut(s) 346
BciT130I CCWGG 1 cut(s) 77
BclI TGATCA 1 cut(s) 235
BcoDI GTCTC 1 cut(s) 121
BfaI CTAG 3 cut(s) 171, 285, 308
BfmI CTRYAG 1 cut(s) 249
BfuAI ACCTGC 1 cut(s) 256
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
Bme1390I CCNGG 1 cut(s) 77
BmrFI CCNGG 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 75
BsaXI ACNNNNNCTCC 4 cut(s) 27, 57, 124, 154
Bse21I CCTNAGG 1 cut(s) 128
BseBI CCWGG 1 cut(s) 77
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 1 cut(s) 370
BseMII CTCAG 1 cut(s) 142
BseXI GCAGC 1 cut(s) 263
BshFI GGCC 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 301
BsiSI CCGG 1 cut(s) 316
BsmAI GTCTC 1 cut(s) 121
BsmI GAATGC 1 cut(s) 375
BsnI GGCC 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 301
Bsp143I GATC 3 cut(s) 93, 159, 235
BspANI GGCC 1 cut(s) 100
BspCNI CTCAG 1 cut(s) 141
BspHI TCATGA 1 cut(s) 238
BspMAI CTGCAG 1 cut(s) 253
BspMI ACCTGC 1 cut(s) 256
BspPI GGATC 1 cut(s) 154
BspQI GCTCTTC 2 cut(s) 182, 306
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 3 cut(s) 93, 159, 235
Bst2UI CCWGG 1 cut(s) 77
Bst4CI ACNGT 2 cut(s) 322, 342
Bst6I CTCTTC 2 cut(s) 182, 306
BstDEI CTNAG 1 cut(s) 128
BstF5I GGATG 1 cut(s) 370
BstKTI GATC 3 cut(s) 96, 162, 238
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 3 cut(s) 93, 159, 235
BstMWI GCNNNNNNNGC 2 cut(s) 23, 132
BstNI CCWGG 1 cut(s) 77
BstSCI CCNGG 1 cut(s) 75
BstSFI CTRYAG 1 cut(s) 249
BstV1I GCAGC 1 cut(s) 263
Bsu36I CCTNAGG 1 cut(s) 128
BsuRI GGCC 1 cut(s) 100
BtsCI GGATG 1 cut(s) 370
BtsIMutI CAGTG 1 cut(s) 91
BveI ACCTGC 1 cut(s) 256
CciI TCATGA 1 cut(s) 238
Csp6I GTAC 1 cut(s) 54
CviAII CATG 6 cut(s) 13, 51, 221, 239, 380, 391
CviQI GTAC 1 cut(s) 54
DdeI CTNAG 1 cut(s) 128
DpnI GATC 3 cut(s) 95, 161, 237
DpnII GATC 3 cut(s) 93, 159, 235
EaeI YGGCCR 1 cut(s) 98
Eam1104I CTCTTC 2 cut(s) 182, 306
EarI CTCTTC 2 cut(s) 182, 306
Ecl136II GAGCTC 1 cut(s) 299
Eco24I GRGCYC 1 cut(s) 301
Eco53kI GAGCTC 1 cut(s) 299
Eco57I CTGAAG 1 cut(s) 319
Eco81I CCTNAGG 1 cut(s) 128
EcoICRI GAGCTC 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 75
EcoT38I GRGCYC 1 cut(s) 301
FaeI CATG 6 cut(s) 16, 54, 224, 242, 383, 394
FaiI YATR 7 cut(s) 14, 52, 222, 240, 313, 381, 392
FatI CATG 6 cut(s) 12, 50, 220, 238, 379, 390
FbaI TGATCA 1 cut(s) 235
Fnu4HI GCNGC 1 cut(s) 252
FokI GGATG 1 cut(s) 377
FriOI GRGCYC 1 cut(s) 301
Fsp4HI GCNGC 1 cut(s) 252
FspBI CTAG 3 cut(s) 171, 285, 308
GluI GCNGC 1 cut(s) 252
HaeIII GGCC 1 cut(s) 100
HapII CCGG 1 cut(s) 316
Hin1II CATG 6 cut(s) 16, 54, 224, 242, 383, 394
HinfI GANTC 1 cut(s) 193
HpaII CCGG 1 cut(s) 316
Hpy188I TCNGA 4 cut(s) 198, 206, 338, 349
Hpy188III TCNNGA 2 cut(s) 130, 239
Hpy99I CGWCG 1 cut(s) 144
HpyCH4III ACNGT 2 cut(s) 322, 342
HpyCH4V TGCA 3 cut(s) 10, 251, 358
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 132
HpyF3I CTNAG 1 cut(s) 128
Hsp92II CATG 6 cut(s) 16, 54, 224, 242, 383, 394
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 3 cut(s) 93, 159, 235
LguI GCTCTTC 2 cut(s) 182, 306
LmnI GCTCC 1 cut(s) 132
LpnPI CCDG 7 cut(s) 59, 62, 82, 89, 115, 261, 329
Lsp1109I GCAGC 1 cut(s) 263
MaeI CTAG 3 cut(s) 171, 285, 308
MaeIII GTNAC 1 cut(s) 322
MalI GATC 3 cut(s) 95, 161, 237
MboI GATC 3 cut(s) 93, 159, 235
MboII GAAGA 4 cut(s) 169, 172, 175, 293
MhlI GDGCHC 1 cut(s) 301
MlsI TGGCCA 1 cut(s) 100
MluNI TGGCCA 1 cut(s) 100
MmeI TCCRAC 2 cut(s) 211, 342
MnlI CCTC 3 cut(s) 67, 137, 178
Mox20I TGGCCA 1 cut(s) 100
MroXI GAANNNNTTC 1 cut(s) 332
MscI TGGCCA 1 cut(s) 100
Msp20I TGGCCA 1 cut(s) 100
MspI CCGG 1 cut(s) 316
MspR9I CCNGG 1 cut(s) 77
Mva1269I GAATGC 1 cut(s) 375
MvaI CCWGG 1 cut(s) 77
MwoI GCNNNNNNNGC 2 cut(s) 23, 132
NdeII GATC 3 cut(s) 93, 159, 235
NlaIII CATG 6 cut(s) 16, 54, 224, 242, 383, 394
NmuCI GTSAC 1 cut(s) 322
PagI TCATGA 1 cut(s) 238
PciSI GCTCTTC 2 cut(s) 182, 306
PctI GAATGC 1 cut(s) 375
PdmI GAANNNNTTC 1 cut(s) 332
PfeI GAWTC 1 cut(s) 193
PkrI GCNGC 1 cut(s) 253
Psp124BI GAGCTC 1 cut(s) 301
Psp6I CCWGG 1 cut(s) 75
PspGI CCWGG 1 cut(s) 75
PstI CTGCAG 1 cut(s) 253
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
SacI GAGCTC 1 cut(s) 301
SapI GCTCTTC 2 cut(s) 182, 306
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 3 cut(s) 93, 159, 235
ScrFI CCNGG 1 cut(s) 77
SduI GDGCHC 1 cut(s) 301
SetI ASST 7 cut(s) 28, 59, 81, 211, 250, 256, 301
SfcI CTRYAG 1 cut(s) 249
SspMI CTAG 3 cut(s) 171, 285, 308
SstI GAGCTC 1 cut(s) 301
StyD4I CCNGG 1 cut(s) 75
TaaI ACNGT 2 cut(s) 322, 342
TaqI TCGA 1 cut(s) 142
TfiI GAWTC 1 cut(s) 193
TscAI CASTG 1 cut(s) 91
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 1 cut(s) 251
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 3 cut(s) 231, 258, 368
TspRI CASTG 1 cut(s) 91
XcmI CCANNNNNNNNNTGG 1 cut(s) 83
XmnI GAANNNNTTC 1 cut(s) 332
XspI CTAG 3 cut(s) 171, 285, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.