FvH4_5g19050

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
10977499 .. 10979403
1905 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g19050.t1

Sequence Viewer

Length: 1809 bp
ATGCAAAGGTATCTGACGTATCTCTCCAAGAGAATCCGAAAACACCTCCAAAATCTTCCACCTTGTGCAAATTATATCAACAACATTATCCCAACTCGTAACAATACAAATTTCACGGCAATTCCTCATGTTGAAACTTCTGACGCATGGGCAAGTATCATTCTTGACCTTGCCCAATGTGGCACCAGAACTGAGCATGCCTTGTTTGAGGCCTCTCACATGCTCAGCTCTGGAACCAGACCAAATGGGTACTTGTTGGTTCAGATGGTCAGAGCTTCAGCCAACCTGGGCTGGGATTTCTGTGGCCTCCAGCTTCATACCTACATTTTGCGGTCTGGGTTTCGCTCCAATGTCTTTGTCTCCACTGCTCTGATCAACTTTTATGTCAGAATCAGCTCATTGAGTAATGCTCACAAGGTGTTCGATGAAATCCCTCAACCAAGTGTAGTTTCTTGGAATTCATTGATTTCTGGATACGCGCATTCGGGGAATTACAGTAAAGCGTTGAGTTTGTTTCTTCAGCTGGAAAGGTCTGGAGTTTCTGCAGATTCGTATTCATTAACAGCGGCTTTAGGAGCTTGTGGCCAACTGAGATTTCTGCAGCTAGGCAAGTCAGTTCACTCAAAGACTGTGAAACTAGGTTTGCAAGACAGCACTGTTGTTTTGAATTGTTTGATTGACATGTATGGGAAATGTGGATTGCTTCAGGAGGCAAACCTTGTGTTTAATAACATGATAGAAAGGGATACTATTTCCTGGAATTCTGTAATAGCGGCTAGTGCTAGAAATGGAAGTTTAGAACAAGCATTCAGTTTTTTGCAGCAGATGGATGACCCTGATATAATCTCATACAATGAAATGATAAATGGCTTTTCGCGGTTTGGAGACATAGAAGATGCTATTGAACTTCTACTTAGTATGCCAAATCCAAATTCATCTTCCTGGAATTCAATAATTACAGGATATGTAAACAGGGGTCGAGCACGAGAAGCTCTGGATTTCTTCTGCAAAATGCAGATGGAGAATGTAGAAATGGATCAATTCACGTTTTCAAGCATTTTAAGTGGAGTTGCAGGTATTTCGGCTTTAACATGGGGAATGCTAATTCATTGCTGCACAATAAAATATGGTTTGGCTACATCAGTTGTAGTTGGTAGTGCTTTGATTGACATGTACTCCAAATGCGGGAAGGTAAGCGATGCTGAAATGATCTTCCATTTACTTCCAGAGAAGAATTTGGTGACATGGAATGCAATGATCTCTGGATTTTCTCGGAACGGTAATCCTTCACAGGTGATGCTCTTTTTTGAGCAGATGAAAAGGGAGAGAGACGTCAAGCCTGATGAAATCACATTCCTTAATGTTATATCTGCGTGTTCACATAATCAAATTCCATTCGAGAGTGCACTTCAATTCTTTGAATCAATGATTGGAGAGTATGGGATTAAGCCGACTCTTGAGCACTGTTGTTCTATGATCCGGCTTATGGGGCAGAGAGGGGAGGTGTGGAGAGCAGAGAAGTTGATATTCCAGCTCGGTTTTGGGGCATGCGGATCAGTTTGGAGGGCACTGGTCGGTGCTTGTGGGGACTGTAGAGATTTGATGGTTGCCAAATATGCTGCTGCAAAGGTGATACAGTTAGAAGGTGATGATGAATATGTTTATGTTAAGATGTCCAACTTGTATGCACACTATGCAAAGTGGGAAGATGTGAGGGTAGTGAGGATGAAGGCGAAAGGAATGAGAAAGGAAGCTGGCTATAGTTGGATAGAAATGGAAAATGTAATCTCAAATTCTGAATATCGATGA

Protein Analysis

603

Amino Acids

67.44

Weight (kDa)

6.68

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 147 - 194 6e-10 PPR repeat family
PPR PF01535 150 - 180 3.2e-08 PPR repeat
PPR_2 PF13041 310 - 358 1.3e-12 PPR repeat family
PPR PF01535 314 - 342 1.9e-06 PPR repeat
PPR_2 PF13041 412 - 460 1.3e-10 PPR repeat family
PPR PF01535 414 - 442 1.5e-07 PPR repeat
E_motif PF20431 534 - 591 7.6e-11 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47460
fragaria_vesca FvH4_5g19050
rosa_chinensis RchiOBHm_Chr7g0203501
rosa_laevigata RLG00000003525
rosa_multiflora Rmu_sc0011994.1_g000002 Rmu_sc0028006.1_g000002
rosa_roxburghii Rroxscaffold_3G00253770
rosa_rugosa Rorug07G0076300
rosa_samantha Rh7AG205800 Rh7BG205700 Rh7CG218500 Rh7DG213000
rosa_wichuraiana Rw7G017980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1335
Acc36I ACCTGC 1 cut(s) 1064
AccB1I GGYRCC 1 cut(s) 182
AccII CGCG 2 cut(s) 479, 877
AciI CCGC 6 cut(s) 331, 566, 773, 877, 1185, 1551
AclWI GGATC 3 cut(s) 1044, 1471, 1561
AcoI YGGCCR 1 cut(s) 583
AcsI RAATTY 8 cut(s) 109, 457, 760, 931, 946, 1234, 1389, 1792
AcuI CTGAAG 3 cut(s) 261, 503, 689
AcyI GRCGYC 1 cut(s) 1332
AdeI CACNNNGTG 2 cut(s) 65, 418
AfaI GTAC 2 cut(s) 251, 1175
AfiI CCNNNNNNNGG 3 cut(s) 292, 1185, 1486
AflIII ACRYGT 2 cut(s) 681, 1170
AgsI TTSAA 7 cut(s) 134, 667, 905, 951, 1053, 1412, 1421
AjnI CCWGG 3 cut(s) 285, 755, 941
Alw21I GWGCWC 3 cut(s) 985, 1408, 1464
Alw26I GTCTC 3 cut(s) 364, 879, 1323
Alw44I GTGCAC 1 cut(s) 1404
AlwI GGATC 3 cut(s) 1044, 1471, 1561
AoxI GGCC 3 cut(s) 210, 304, 583
ApaLI GTGCAC 1 cut(s) 1404
ApeKI GCWGC 5 cut(s) 601, 820, 1113, 1619, 1622
ApoI RAATTY 8 cut(s) 109, 457, 760, 931, 946, 1234, 1389, 1792
AspLEI GCGC 1 cut(s) 481
AsuHPI GGTGA 4 cut(s) 1252, 1306, 1642, 1658
BaeGI GKGCMC 2 cut(s) 1408, 1570
BalI TGGCCA 1 cut(s) 585
BanI GGYRCC 1 cut(s) 182
BauI CACGAG 1 cut(s) 984
Bbv12I GWGCWC 3 cut(s) 985, 1408, 1464
BbvI GCAGC 5 cut(s) 613, 832, 1100, 1606, 1609
BccI CCATC 4 cut(s) 259, 820, 1012, 1597
BceAI ACGGC 1 cut(s) 132
BcgI CGANNNNNNTGC 2 cut(s) 1062, 1096
BciT130I CCWGG 3 cut(s) 287, 757, 943
BciVI GTATCC 2 cut(s) 467, 739
BclI TGATCA 1 cut(s) 372
BcoDI GTCTC 3 cut(s) 364, 879, 1323
BfaI CTAG 4 cut(s) 605, 638, 777, 783
BfmI CTRYAG 4 cut(s) 543, 599, 1591, 1759
BfuAI ACCTGC 1 cut(s) 1064
BfuI GTATCC 2 cut(s) 467, 739
BisI GCNGC 7 cut(s) 567, 602, 774, 821, 1114, 1620, 1623
BlpI GCTNAGC 1 cut(s) 224
BlsI GCNGC 7 cut(s) 568, 603, 775, 822, 1115, 1621, 1624
Bme1390I CCNGG 3 cut(s) 287, 757, 943
BmiI GGNNCC 2 cut(s) 184, 235
BmrFI CCNGG 3 cut(s) 287, 757, 943
BmsI GCATC 3 cut(s) 886, 1189, 1287
BplI GAGNNNNNCTC 2 cut(s) 394, 426
BpmI CTGGAG 2 cut(s) 293, 555
Bpu1102I GCTNAGC 1 cut(s) 224
BpuEI CTTGAG 1 cut(s) 1478
Bsa29I ATCGAT 1 cut(s) 1804
BsaHI GRCGYC 1 cut(s) 1332
BsaJI CCNNGG 1 cut(s) 286
BsaXI ACNNNNNCTCC 2 cut(s) 1160, 1190
Bsc4I CCNNNNNNNGG 3 cut(s) 292, 1185, 1486
Bse1I ACTGG 1 cut(s) 1575
Bse3DI GCAATG 2 cut(s) 1108, 1260
BseBI CCWGG 3 cut(s) 287, 757, 943
BseCI ATCGAT 1 cut(s) 1804
BseDI CCNNGG 1 cut(s) 286
BseGI GGATG 2 cut(s) 835, 1731
BseLI CCNNNNNNNGG 3 cut(s) 292, 1185, 1486
BseMI GCAATG 2 cut(s) 1108, 1260
BseMII CTCAG 3 cut(s) 183, 238, 581
BseNI ACTGG 1 cut(s) 1575
BseSI GKGCMC 2 cut(s) 1408, 1570
BseXI GCAGC 5 cut(s) 613, 832, 1100, 1606, 1609
BseYI CCCAGC 1 cut(s) 291
BsgI GTGCAG 1 cut(s) 1099
Bsh1236I CGCG 2 cut(s) 479, 877
BshFI GGCC 3 cut(s) 212, 306, 585
BshNI GGYRCC 1 cut(s) 182
BshVI ATCGAT 1 cut(s) 1804
BsiHKAI GWGCWC 3 cut(s) 985, 1408, 1464
BsiSI CCGG 1 cut(s) 1480
BslFI GGGAC 1 cut(s) 1601
BslI CCNNNNNNNGG 3 cut(s) 292, 1185, 1486
BsmAI GTCTC 3 cut(s) 364, 879, 1323
BsmBI CGTCTC 1 cut(s) 1323
BsmFI GGGAC 1 cut(s) 1601
BsmI GAATGC 4 cut(s) 481, 806, 1104, 1255
BsnI GGCC 3 cut(s) 212, 306, 585
Bsp1286I GDGCHC 4 cut(s) 985, 1408, 1464, 1570
Bsp143I GATC 6 cut(s) 372, 1036, 1209, 1257, 1476, 1553
Bsp1720I GCTNAGC 1 cut(s) 224
BspACI CCGC 6 cut(s) 331, 566, 773, 877, 1185, 1551
BspANI GGCC 3 cut(s) 212, 306, 585
BspCNI CTCAG 3 cut(s) 184, 237, 582
BspDI ATCGAT 1 cut(s) 1804
BspFNI CGCG 2 cut(s) 479, 877
BspLI GGNNCC 2 cut(s) 184, 235
BspMAI CTGCAG 2 cut(s) 547, 603
BspMI ACCTGC 1 cut(s) 1064
BspPI GGATC 3 cut(s) 1044, 1471, 1561
BspT107I GGYRCC 1 cut(s) 182
BsrDI GCAATG 2 cut(s) 1108, 1260
BsrI ACTGG 1 cut(s) 1575
BssECI CCNNGG 1 cut(s) 286
BssMI GATC 6 cut(s) 372, 1036, 1209, 1257, 1476, 1553
BssNI GRCGYC 1 cut(s) 1332
BssSI CACGAG 1 cut(s) 984
Bst2BI CACGAG 1 cut(s) 984
Bst2UI CCWGG 3 cut(s) 287, 757, 943
Bst4CI ACNGT 7 cut(s) 497, 631, 658, 1280, 1466, 1592, 1638
BstACI GRCGYC 1 cut(s) 1332
BstAPI GCANNNNNTGC 1 cut(s) 1694
BstC8I GCNNGC 3 cut(s) 198, 1549, 1756
BstDEI CTNAG 4 cut(s) 192, 224, 590, 914
BstF5I GGATG 2 cut(s) 835, 1731
BstFNI CGCG 2 cut(s) 479, 877
BstHHI GCGC 1 cut(s) 481
BstKTI GATC 6 cut(s) 375, 1039, 1212, 1260, 1479, 1556
BstMAI GTCTC 3 cut(s) 364, 879, 1323
BstMBI GATC 6 cut(s) 372, 1036, 1209, 1257, 1476, 1553
BstMWI GCNNNNNNNGC 6 cut(s) 575, 779, 989, 1489, 1616, 1694
BstNI CCWGG 3 cut(s) 287, 757, 943
BstNSI RCATGY 5 cut(s) 200, 223, 685, 1174, 1551
BstSCI CCNGG 3 cut(s) 285, 755, 941
BstSFI CTRYAG 4 cut(s) 543, 599, 1591, 1759
BstSLI GKGCMC 2 cut(s) 1408, 1570
BstUI CGCG 2 cut(s) 479, 877
BstV1I GCAGC 5 cut(s) 613, 832, 1100, 1606, 1609
Bsu15I ATCGAT 1 cut(s) 1804
BsuI GTATCC 2 cut(s) 467, 739
BsuRI GGCC 3 cut(s) 212, 306, 585
BsuTUI ATCGAT 1 cut(s) 1804
BtgZI GCGATG 1 cut(s) 1212
BtsCI GGATG 2 cut(s) 835, 1731
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 4 cut(s) 363, 654, 1462, 1568
BveI ACCTGC 1 cut(s) 1064
Cac8I GCNNGC 3 cut(s) 198, 1549, 1756
CfoI GCGC 1 cut(s) 481
ClaI ATCGAT 1 cut(s) 1804
CseI GACGC 1 cut(s) 152
Csp6I GTAC 2 cut(s) 250, 1174
CviQI GTAC 2 cut(s) 250, 1174
DdeI CTNAG 4 cut(s) 192, 224, 590, 914
DpnI GATC 6 cut(s) 374, 1038, 1211, 1259, 1478, 1555
DpnII GATC 6 cut(s) 372, 1036, 1209, 1257, 1476, 1553
DraIII CACNNNGTG 2 cut(s) 65, 418
EaeI YGGCCR 1 cut(s) 583
Eco147I AGGCCT 1 cut(s) 212
Eco57I CTGAAG 3 cut(s) 261, 503, 689
EcoRI GAATTC 3 cut(s) 457, 760, 946
EcoRII CCWGG 3 cut(s) 285, 755, 941
Esp3I CGTCTC 1 cut(s) 1323
FaqI GGGAC 1 cut(s) 1601
FauI CCCGC 1 cut(s) 1178
FbaI TGATCA 1 cut(s) 372
Fnu4HI GCNGC 7 cut(s) 567, 602, 774, 821, 1114, 1620, 1623
FokI GGATG 2 cut(s) 842, 1738
Fsp4HI GCNGC 7 cut(s) 567, 602, 774, 821, 1114, 1620, 1623
FspBI CTAG 4 cut(s) 605, 638, 777, 783
GlaI GCGC 1 cut(s) 480
GluI GCNGC 7 cut(s) 567, 602, 774, 821, 1114, 1620, 1623
GsaI CCCAGC 1 cut(s) 295
GsuI CTGGAG 2 cut(s) 293, 555
HaeIII GGCC 3 cut(s) 212, 306, 585
HapII CCGG 1 cut(s) 1480
HgaI GACGC 1 cut(s) 152
HhaI GCGC 1 cut(s) 481
Hin1I GRCGYC 1 cut(s) 1332
Hin6I GCGC 1 cut(s) 479
HinP1I GCGC 1 cut(s) 479
HinfI GANTC 5 cut(s) 33, 390, 548, 1421, 1453
HpaII CCGG 1 cut(s) 1480
HphI GGTGA 4 cut(s) 1252, 1306, 1642, 1658
Hpy166II GTNNAC 4 cut(s) 619, 970, 1379, 1406
Hpy188I TCNGA 9 cut(s) 15, 38, 142, 264, 272, 372, 389, 1275, 1798
Hpy8I GTNNAC 4 cut(s) 619, 970, 1379, 1406
HpyAV CCTTC 4 cut(s) 1183, 1296, 1637, 1723
HpyCH4III ACNGT 7 cut(s) 497, 631, 658, 1280, 1466, 1592, 1638
HpyCH4IV ACGT 3 cut(s) 17, 1046, 1332
HpyF10VI GCNNNNNNNGC 6 cut(s) 575, 779, 989, 1489, 1616, 1694
HpyF3I CTNAG 4 cut(s) 192, 224, 590, 914
HpySE526I ACGT 3 cut(s) 17, 1046, 1332
Hsp92I GRCGYC 1 cut(s) 1332
HspAI GCGC 1 cut(s) 479
Ksp22I TGATCA 1 cut(s) 372
Kzo9I GATC 6 cut(s) 372, 1036, 1209, 1257, 1476, 1553
LmnI GCTCC 2 cut(s) 350, 575
Lsp1109I GCAGC 5 cut(s) 613, 832, 1100, 1606, 1609
LweI GCATC 3 cut(s) 886, 1189, 1287
MaeI CTAG 4 cut(s) 605, 638, 777, 783
MaeII ACGT 3 cut(s) 17, 1046, 1332
MaeIII GTNAC 2 cut(s) 98, 1240
MalI GATC 6 cut(s) 374, 1038, 1211, 1259, 1478, 1555
MboI GATC 6 cut(s) 372, 1036, 1209, 1257, 1476, 1553
MboII GAAGA 8 cut(s) 47, 509, 905, 930, 994, 1204, 1243, 1718
MhlI GDGCHC 4 cut(s) 985, 1408, 1464, 1570
MlsI TGGCCA 1 cut(s) 585
MluNI TGGCCA 1 cut(s) 585
MlyI GAGTC 1 cut(s) 1447
MmeI TCCRAC 2 cut(s) 1701, 1745
Mox20I TGGCCA 1 cut(s) 585
MscI TGGCCA 1 cut(s) 585
MseI TTAA 7 cut(s) 560, 726, 1061, 1088, 1359, 1446, 1668
Msp20I TGGCCA 1 cut(s) 585
MspA1I CMGCKG 2 cut(s) 523, 566
MspI CCGG 1 cut(s) 1480
MspR9I CCNGG 3 cut(s) 287, 757, 943
Mva1269I GAATGC 4 cut(s) 481, 806, 1104, 1255
MvaI CCWGG 3 cut(s) 287, 757, 943
MvnI CGCG 2 cut(s) 479, 877
MwoI GCNNNNNNNGC 6 cut(s) 575, 779, 989, 1489, 1616, 1694
NdeII GATC 6 cut(s) 372, 1036, 1209, 1257, 1476, 1553
NlaIV GGNNCC 2 cut(s) 184, 235
NmuCI GTSAC 1 cut(s) 1240
NspI RCATGY 5 cut(s) 200, 223, 685, 1174, 1551
PaeI GCATGC 2 cut(s) 200, 1551
PceI AGGCCT 1 cut(s) 212
PciI ACATGT 2 cut(s) 681, 1170
PctI GAATGC 4 cut(s) 481, 806, 1104, 1255
PfeI GAWTC 4 cut(s) 33, 390, 548, 1421
PfoI TCCNGGA 2 cut(s) 755, 941
PkrI GCNGC 7 cut(s) 568, 603, 775, 822, 1115, 1621, 1624
PleI GAGTC 1 cut(s) 1447
PpsI GAGTC 1 cut(s) 1447
PscI ACATGT 2 cut(s) 681, 1170
Psp6I CCWGG 3 cut(s) 285, 755, 941
PspFI CCCAGC 1 cut(s) 291
PspGI CCWGG 3 cut(s) 285, 755, 941
PspN4I GGNNCC 2 cut(s) 184, 235
PstI CTGCAG 2 cut(s) 547, 603
PvuII CAGCTG 1 cut(s) 523
RsaI GTAC 2 cut(s) 251, 1175
RsaNI GTAC 2 cut(s) 250, 1174
SaqAI TTAA 7 cut(s) 560, 726, 1061, 1088, 1359, 1446, 1668
SatI GCNGC 7 cut(s) 567, 602, 774, 821, 1114, 1620, 1623
Sau3AI GATC 6 cut(s) 372, 1036, 1209, 1257, 1476, 1553
SchI GAGTC 1 cut(s) 1447
ScrFI CCNGG 3 cut(s) 287, 757, 943
SduI GDGCHC 4 cut(s) 985, 1408, 1464, 1570
SfaNI GCATC 3 cut(s) 886, 1189, 1287
SfcI CTRYAG 4 cut(s) 543, 599, 1591, 1759
SmlI CTYRAG 1 cut(s) 1457
SmoI CTYRAG 1 cut(s) 1457
SphI GCATGC 2 cut(s) 200, 1551
SseBI AGGCCT 1 cut(s) 212
SsiI CCGC 6 cut(s) 331, 566, 773, 877, 1185, 1551
SspMI CTAG 4 cut(s) 605, 638, 777, 783
StuI AGGCCT 1 cut(s) 212
StyD4I CCNGG 3 cut(s) 285, 755, 941
TaaI ACNGT 7 cut(s) 497, 631, 658, 1280, 1466, 1592, 1638
TaiI ACGT 3 cut(s) 20, 1049, 1335
TaqI TCGA 4 cut(s) 423, 979, 1398, 1804
TatI WGTACW 1 cut(s) 1173
TauI GCSGC 2 cut(s) 569, 776
TfiI GAWTC 4 cut(s) 33, 390, 548, 1421
Tru1I TTAA 7 cut(s) 560, 726, 1061, 1088, 1359, 1446, 1668
Tru9I TTAA 7 cut(s) 560, 726, 1061, 1088, 1359, 1446, 1668
TscAI CASTG 4 cut(s) 370, 661, 1469, 1575
TseFI GTSAC 1 cut(s) 1240
TseI GCWGC 5 cut(s) 601, 820, 1113, 1619, 1622
Tsp45I GTSAC 1 cut(s) 1240
TspRI CASTG 4 cut(s) 370, 661, 1469, 1575
VneI GTGCAC 1 cut(s) 1404
XapI RAATTY 8 cut(s) 109, 457, 760, 931, 946, 1234, 1389, 1792
XceI RCATGY 5 cut(s) 200, 223, 685, 1174, 1551
XcmI CCANNNNNNNNNTGG 1 cut(s) 1538
XspI CTAG 4 cut(s) 605, 638, 777, 783
ZraI GACGTC 1 cut(s) 1333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.