Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0017164

Physical Location & Seq

Genomic Coordinates Forward (+)

19155705 .. 19157663

Gene Structure 1959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G017980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1809 bp

ATGCAAAGGTTTCTCTTCAAGAGAATCCAAAAACCCCTCCAAAGCCTTGCACTTTGTGCAAATTATATTACCACAACTAATATCCCAACTCATAACAATACCAATGCCACGACAATTCCTCAAGTTGAAACTTCAGACTCATGGGCAAGTATCATTTTTGACCTTGCTCAATGTGGCACCAGAACTGGGCATGCCTTATTTGAGGCCCCTCACATGCTCAACTCTGGTACCAAACCAAATGGGTACTTGTTTGTTCAGATGGTCAGAGCTTCAGCCAACCTGGGCTGGGATTTCTTCAGCTTGCAACTTCATAGCTACATTTTACGATCTGGGTTTTGCTCCAATGTTTTTGTTTCCACTGCTCTGATCAATTTTTATATCGGAATCGGCTCATTGAGTGATGCTCGCAAGGTGTTTGTTGAAATTCCTCATCCAAGTGTAGTTTCTTGGAATTCTTTGATTTCTGGATACGTGCATTATGGGCAGTCCCGTAAAGCGTTGAGTTTGTTTCTTCAGCTGGAAAGGTCTGAAGTTTCTGTAGATTCATATTCGTTAACTGCGGCCTTAGGTGCATGTGGCCAACTGAGCTTTCTGCTGCTTGGCAAGACAGTTCACTCAAAGACTGTGAAACTAGGTTTGCAAAATAGCACTGTTGTTTTGAATTGTTTGATTGACATGTATGGGAAATGTGGATCACTTCAGGAGGCAATCCTTGTGTTCAATAACATGATAGAAAAGGATACTATTTCGTGGAATTCCGTAATAGCGGCAAGTGCAAGAAATGGAAGCTTACAACAAGCATTCAGTTTTTTGCAGCAGATGGATAACCCTGATATAATCTCATACAATGAACTGATAAATGGCTTTTCGCGGTTTGGAGACGTAGAAGATGCTATTAAACTTCTATTCAGTATGCCAAATCCAAATTCATCTTCCTGGAATTCGATAATTACAGGATATGTAAACAGGGGTCGAGCACAAGAAGCTTTGGATTTCTTCTGCAAAATGCACTTGGAAAATGTAGAAATGGATCAATTCACGTTTTCAAGCATTTTAAGTGGAGTTGCAGGTATTTCGGCTTTAACGTGGGGCATGCTAATCCATTGTTGCACCATAAAATTTGGTTTGGCTACATCAATTGTGGTTGGTAGTTCTTTGATTGACATGTACTCCAAATGCGGGAAGATAAGCGATGCTGAAACAATCTTCCATTTACTTCCAGAGAAGAATTTGGTGACATGGAATTCAATGATCTCTGGCTTTTCTTGGAACGGTAATCCTTCAAAGATGATGCTCCTTTTCGAGCAGATGAAAATGGAGAGAGATGTCAAGCCTGATGAGATCACATTCCTTAATGTTATATCTGCATGTTTACATAATCAAATTCCATTTGAGAATGCACTTCAGTACTTTGAATCAATGATCAAAGAGTATGGGATTGAGCCGACTCTTGAGCACTGTTGTTCTATGATTCGGCTAATGGGGCAGAGAGGGGAGGTGTGGAGAGCAGAGAAGATGATATTCCAGCTCGGTTTTGGGACATGCGGATCAGTTTGGAGGGCACTGCTCGGTGCTTGTGGAAAGTGTAGAGATTTGAAAGTTGCCAAAAATGCAGCTGCAAAGGTGATACAGTTAGAAGGTGAAGATGAATTTGTTTATGTTACGATGTCTAACTTGTATGCACACTATGCAAAGTGGGAAGATGTGAGGGTAGCGAGGAAGCTGATGAAGGAGAAAGGAATGAGAAAGGAAGCTGGTTATAGTTGGATTGAAATGGAAAATGTTATCTCAAATTCCGAATTACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

602

Amino Acids

67.32

Weight (kDa)

6.68

Isoelectric Point (pI)

34.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	145 - 192	1e-08	PPR repeat family
PPR	PF01535	148 - 176	6.1e-06	PPR repeat
PPR_1	PF12854	276 - 305	6.9e-06	PPR repeat
PPR_2	PF13041	308 - 356	5.3e-12	PPR repeat family
PPR	PF01535	312 - 340	7.5e-06	PPR repeat
PPR_2	PF13041	410 - 458	1.3e-09	PPR repeat family
PPR	PF01535	412 - 439	2.2e-07	PPR repeat
E_motif	PF20431	531 - 591	2.1e-13	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47460
fragaria_vesca	FvH4_5g19050
rosa_chinensis	RchiOBHm_Chr7g0203501
rosa_laevigata	RLG00000003525
rosa_multiflora	Rmu_sc0011994.1_g000002 Rmu_sc0028006.1_g000002
rosa_roxburghii	Rroxscaffold_3G00253770
rosa_rugosa	Rorug07G0076300
rosa_samantha	Rh7AG205800 Rh7BG205700 Rh7CG218500 Rh7DG213000
rosa_wichuraiana	Rw7G017980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1058
Acc65I	GGTACC	1 cut(s)	227
AccB1I	GGYRCC	2 cut(s)	176, 227
AccII	CGCG	1 cut(s)	871
AciI	CCGC	5 cut(s)	560, 767, 871, 1179, 1545
AclWI	GGATC	3 cut(s)	700, 1038, 1555
AcoI	YGGCCR	1 cut(s)	577
AcuI	CTGAAG	7 cut(s)	117, 255, 280, 497, 549, 683, 1388
AdeI	CACNNNGTG	1 cut(s)	56
AfaI	GTAC	4 cut(s)	229, 245, 1169, 1409
AfiI	CCNNNNNNNGG	3 cut(s)	186, 286, 1179
AflIII	ACRYGT	2 cut(s)	675, 1164
AjnI	CCWGG	2 cut(s)	279, 935
AjuI	GAANNNNNNNTTGG	8 cut(s)	427, 459, 573, 605, 910, 916, 942, 948
Alw21I	GWGCWC	2 cut(s)	979, 1458
Alw26I	GTCTC	1 cut(s)	873
AlwI	GGATC	3 cut(s)	700, 1038, 1555
AoxI	GGCC	3 cut(s)	204, 561, 577
ApeKI	GCWGC	4 cut(s)	595, 814, 1613, 1616
Asp718I	GGTACC	1 cut(s)	227
AspS9I	GGNCC	1 cut(s)	205
AsuHPI	GGTGA	3 cut(s)	1246, 1636, 1652
AxyI	CCTNAGG	1 cut(s)	565
BaeGI	GKGCMC	1 cut(s)	1564
BaeI	ACNNNNGTAYC	2 cut(s)	211, 244
BalI	TGGCCA	1 cut(s)	579
BanI	GGYRCC	2 cut(s)	176, 227
Bbv12I	GWGCWC	2 cut(s)	979, 1458
BbvI	GCAGC	4 cut(s)	582, 826, 1603, 1625
BccI	CCATC	2 cut(s)	253, 814
BcgI	CGANNNNNNTGC	2 cut(s)	1056, 1090
BciT130I	CCWGG	2 cut(s)	281, 937
BciVI	GTATCC	2 cut(s)	461, 733
BclI	TGATCA	2 cut(s)	366, 1422
BcoDI	GTCTC	1 cut(s)	873
BfaI	CTAG	1 cut(s)	632
BfmI	CTRYAG	1 cut(s)	537
BfuAI	ACCTGC	1 cut(s)	1058
BfuI	GTATCC	2 cut(s)	461, 733
BisI	GCNGC	6 cut(s)	561, 596, 768, 815, 1614, 1617
BlsI	GCNGC	6 cut(s)	562, 597, 769, 816, 1615, 1618
BmcAI	AGTACT	1 cut(s)	1409
Bme1390I	CCNGG	2 cut(s)	281, 937
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	3 cut(s)	178, 207, 229
BmrFI	CCNGG	2 cut(s)	281, 937
BmrI	ACTGGG	1 cut(s)	195
BmsI	GCATC	4 cut(s)	391, 880, 1183, 1281
BmuI	ACTGGG	1 cut(s)	195
BplI	GAGNNNNNCTC	2 cut(s)	388, 420
BpuEI	CTTGAG	2 cut(s)	105, 1472
BsaAI	YACGTR	1 cut(s)	472
BsaJI	CCNNGG	1 cut(s)	280
BsaXI	ACNNNNNCTCC	2 cut(s)	1154, 1184
Bsc4I	CCNNNNNNNGG	3 cut(s)	186, 286, 1179
Bse1I	ACTGG	1 cut(s)	190
Bse21I	CCTNAGG	1 cut(s)	565
BseBI	CCWGG	2 cut(s)	281, 937
BseDI	CCNNGG	1 cut(s)	280
BseGI	GGATG	1 cut(s)	430
BseLI	CCNNNNNNNGG	3 cut(s)	186, 286, 1179
BseMII	CTCAG	1 cut(s)	575
BseNI	ACTGG	1 cut(s)	190
BseSI	GKGCMC	1 cut(s)	1564
BseXI	GCAGC	4 cut(s)	582, 826, 1603, 1625
BseYI	CCCAGC	1 cut(s)	285
Bsh1236I	CGCG	1 cut(s)	871
BshFI	GGCC	3 cut(s)	206, 563, 579
BshNI	GGYRCC	2 cut(s)	176, 227
BsiHKAI	GWGCWC	2 cut(s)	979, 1458
BslFI	GGGAC	2 cut(s)	472, 1552
BslI	CCNNNNNNNGG	3 cut(s)	186, 286, 1179
BsmAI	GTCTC	1 cut(s)	873
BsmBI	CGTCTC	1 cut(s)	873
BsmFI	GGGAC	2 cut(s)	472, 1552
BsmI	GAATGC	2 cut(s)	800, 1402
BsnI	GGCC	3 cut(s)	206, 563, 579
Bsp1286I	GDGCHC	3 cut(s)	979, 1458, 1564
Bsp143I	GATC	8 cut(s)	326, 366, 692, 1030, 1251, 1341, 1422, 1547
BspACI	CCGC	5 cut(s)	560, 767, 871, 1179, 1545
BspANI	GGCC	3 cut(s)	206, 563, 579
BspCNI	CTCAG	1 cut(s)	576
BspFNI	CGCG	1 cut(s)	871
BspLI	GGNNCC	3 cut(s)	178, 207, 229
BspMI	ACCTGC	1 cut(s)	1058
BspPI	GGATC	3 cut(s)	700, 1038, 1555
BspT107I	GGYRCC	2 cut(s)	176, 227
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	280
BssMI	GATC	8 cut(s)	326, 366, 692, 1030, 1251, 1341, 1422, 1547
Bst2UI	CCWGG	2 cut(s)	281, 937
Bst4CI	ACNGT	7 cut(s)	610, 625, 652, 1274, 1460, 1632, 1806
Bst6I	CTCTTC	1 cut(s)	20
BstAPI	GCANNNNNTGC	2 cut(s)	56, 1688
BstBAI	YACGTR	1 cut(s)	472
BstC8I	GCNNGC	4 cut(s)	192, 302, 406, 1094
BstDEI	CTNAG	2 cut(s)	565, 584
BstF5I	GGATG	1 cut(s)	430
BstFNI	CGCG	1 cut(s)	871
BstKTI	GATC	8 cut(s)	329, 369, 695, 1033, 1254, 1344, 1425, 1550
BstMAI	GTCTC	1 cut(s)	873
BstMBI	GATC	8 cut(s)	326, 366, 692, 1030, 1251, 1341, 1422, 1547
BstMWI	GCNNNNNNNGC	9 cut(s)	56, 481, 569, 585, 773, 983, 1483, 1610, 1688
BstNI	CCWGG	2 cut(s)	281, 937
BstNSI	RCATGY	8 cut(s)	194, 217, 576, 679, 1096, 1168, 1371, 1545
BstSCI	CCNGG	2 cut(s)	279, 935
BstSFI	CTRYAG	1 cut(s)	537
BstSLI	GKGCMC	1 cut(s)	1564
BstUI	CGCG	1 cut(s)	871
BstV1I	GCAGC	4 cut(s)	582, 826, 1603, 1625
Bsu36I	CCTNAGG	1 cut(s)	565
BsuI	GTATCC	2 cut(s)	461, 733
BsuRI	GGCC	3 cut(s)	206, 563, 579
BtgZI	GCGATG	1 cut(s)	1206
BtsCI	GGATG	1 cut(s)	430
BtsI	GCAGTG	2 cut(s)	357, 1562
BtsIMutI	CAGTG	4 cut(s)	357, 648, 1456, 1562
BveI	ACCTGC	1 cut(s)	1058
Cac8I	GCNNGC	4 cut(s)	192, 302, 406, 1094
Cfr13I	GGNCC	1 cut(s)	205
Csp6I	GTAC	4 cut(s)	228, 244, 1168, 1408
CviQI	GTAC	4 cut(s)	228, 244, 1168, 1408
DdeI	CTNAG	2 cut(s)	565, 584
DpnI	GATC	8 cut(s)	328, 368, 694, 1032, 1253, 1343, 1424, 1549
DpnII	GATC	8 cut(s)	326, 366, 692, 1030, 1251, 1341, 1422, 1547
DraIII	CACNNNGTG	1 cut(s)	56
EaeI	YGGCCR	1 cut(s)	577
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco57I	CTGAAG	7 cut(s)	117, 255, 280, 497, 549, 683, 1388
Eco81I	CCTNAGG	1 cut(s)	565
EcoO109I	RGGNCCY	1 cut(s)	205
EcoRI	GAATTC	4 cut(s)	451, 754, 940, 1243
EcoRII	CCWGG	2 cut(s)	279, 935
Esp3I	CGTCTC	1 cut(s)	873
FaqI	GGGAC	2 cut(s)	472, 1552
FauI	CCCGC	1 cut(s)	1172
FbaI	TGATCA	2 cut(s)	366, 1422
Fnu4HI	GCNGC	6 cut(s)	561, 596, 768, 815, 1614, 1617
FokI	GGATG	1 cut(s)	417
Fsp4HI	GCNGC	6 cut(s)	561, 596, 768, 815, 1614, 1617
FspBI	CTAG	1 cut(s)	632
GluI	GCNGC	6 cut(s)	561, 596, 768, 815, 1614, 1617
GsaI	CCCAGC	1 cut(s)	289
HaeIII	GGCC	3 cut(s)	206, 563, 579
HincII	GTYRAC	1 cut(s)	555
HindII	GTYRAC	1 cut(s)	555
HindIII	AAGCTT	2 cut(s)	787, 984
HinfI	GANTC	7 cut(s)	24, 137, 384, 542, 1415, 1447, 1471
HpaI	GTTAAC	1 cut(s)	555
HphI	GGTGA	3 cut(s)	1246, 1636, 1652
Hpy166II	GTNNAC	4 cut(s)	555, 613, 964, 1373
Hpy188I	TCNGA	7 cut(s)	136, 258, 266, 366, 383, 529, 1798
Hpy188III	TCNNGA	5 cut(s)	19, 465, 701, 1220, 1451
Hpy8I	GTNNAC	4 cut(s)	555, 613, 964, 1373
HpyAV	CCTTC	3 cut(s)	1290, 1631, 1723
HpyCH4III	ACNGT	7 cut(s)	610, 625, 652, 1274, 1460, 1632, 1806
HpyCH4IV	ACGT	4 cut(s)	471, 882, 1040, 1085
HpyF10VI	GCNNNNNNNGC	9 cut(s)	56, 481, 569, 585, 773, 983, 1483, 1610, 1688
HpyF3I	CTNAG	2 cut(s)	565, 584
HpySE526I	ACGT	4 cut(s)	471, 882, 1040, 1085
KpnI	GGTACC	1 cut(s)	231
Ksp22I	TGATCA	2 cut(s)	366, 1422
KspAI	GTTAAC	1 cut(s)	555
Kzo9I	GATC	8 cut(s)	326, 366, 692, 1030, 1251, 1341, 1422, 1547
LmnI	GCTCC	2 cut(s)	344, 1299
Lsp1109I	GCAGC	4 cut(s)	582, 826, 1603, 1625
LweI	GCATC	4 cut(s)	391, 880, 1183, 1281
MaeI	CTAG	1 cut(s)	632
MaeII	ACGT	4 cut(s)	471, 882, 1040, 1085
MaeIII	GTNAC	2 cut(s)	1234, 1660
MalI	GATC	8 cut(s)	328, 368, 694, 1032, 1253, 1343, 1424, 1549
MboI	GATC	8 cut(s)	326, 366, 692, 1030, 1251, 1341, 1422, 1547
MfeI	CAATTG	1 cut(s)	1137
MhlI	GDGCHC	3 cut(s)	979, 1458, 1564
MlsI	TGGCCA	1 cut(s)	579
MluNI	TGGCCA	1 cut(s)	579
MlyI	GAGTC	2 cut(s)	131, 1441
MmeI	TCCRAC	1 cut(s)	1745
Mox20I	TGGCCA	1 cut(s)	579
MscI	TGGCCA	1 cut(s)	579
MseI	TTAA	5 cut(s)	554, 897, 1055, 1082, 1353
MslI	CAYNNNNRTG	1 cut(s)	435
Msp20I	TGGCCA	1 cut(s)	579
MspA1I	CMGCKG	2 cut(s)	517, 1616
MspR9I	CCNGG	2 cut(s)	281, 937
MunI	CAATTG	1 cut(s)	1137
Mva1269I	GAATGC	2 cut(s)	800, 1402
MvaI	CCWGG	2 cut(s)	281, 937
MvnI	CGCG	1 cut(s)	871
MwoI	GCNNNNNNNGC	9 cut(s)	56, 481, 569, 585, 773, 983, 1483, 1610, 1688
NdeII	GATC	8 cut(s)	326, 366, 692, 1030, 1251, 1341, 1422, 1547
NlaIV	GGNNCC	3 cut(s)	178, 207, 229
NmuCI	GTSAC	1 cut(s)	1234
NspI	RCATGY	8 cut(s)	194, 217, 576, 679, 1096, 1168, 1371, 1545
PaeI	GCATGC	2 cut(s)	194, 1096
PciI	ACATGT	2 cut(s)	675, 1164
PcsI	WCGNNNNNNNCGW	1 cut(s)	1082
PctI	GAATGC	2 cut(s)	800, 1402
PfeI	GAWTC	5 cut(s)	24, 384, 542, 1415, 1471
PfoI	TCCNGGA	1 cut(s)	935
PkrI	GCNGC	6 cut(s)	562, 597, 769, 816, 1615, 1618
PleI	GAGTC	2 cut(s)	131, 1441
PpsI	GAGTC	2 cut(s)	131, 1441
Ppu21I	YACGTR	1 cut(s)	472
PscI	ACATGT	2 cut(s)	675, 1164
Psp6I	CCWGG	2 cut(s)	279, 935
PspFI	CCCAGC	1 cut(s)	285
PspGI	CCWGG	2 cut(s)	279, 935
PspN4I	GGNNCC	3 cut(s)	178, 207, 229
PspPI	GGNCC	1 cut(s)	205
PvuII	CAGCTG	2 cut(s)	517, 1616
RsaI	GTAC	4 cut(s)	229, 245, 1169, 1409
RsaNI	GTAC	4 cut(s)	228, 244, 1168, 1408
RseI	CAYNNNNRTG	1 cut(s)	435
SaqAI	TTAA	5 cut(s)	554, 897, 1055, 1082, 1353
SatI	GCNGC	6 cut(s)	561, 596, 768, 815, 1614, 1617
Sau3AI	GATC	8 cut(s)	326, 366, 692, 1030, 1251, 1341, 1422, 1547
Sau96I	GGNCC	1 cut(s)	205
ScaI	AGTACT	1 cut(s)	1409
SchI	GAGTC	2 cut(s)	131, 1441
ScrFI	CCNGG	2 cut(s)	281, 937
SduI	GDGCHC	3 cut(s)	979, 1458, 1564
SfaNI	GCATC	4 cut(s)	391, 880, 1183, 1281
SfcI	CTRYAG	1 cut(s)	537
SmiMI	CAYNNNNRTG	1 cut(s)	435
SmlI	CTYRAG	2 cut(s)	120, 1451
SmoI	CTYRAG	2 cut(s)	120, 1451
SphI	GCATGC	2 cut(s)	194, 1096
SsiI	CCGC	5 cut(s)	560, 767, 871, 1179, 1545
SspMI	CTAG	1 cut(s)	632
StyD4I	CCNGG	2 cut(s)	279, 935
TaaI	ACNGT	7 cut(s)	610, 625, 652, 1274, 1460, 1632, 1806
TaiI	ACGT	4 cut(s)	474, 885, 1043, 1088
TaqI	TCGA	3 cut(s)	944, 973, 1302
TatI	WGTACW	2 cut(s)	1167, 1407
TauI	GCSGC	2 cut(s)	563, 770
TfiI	GAWTC	5 cut(s)	24, 384, 542, 1415, 1471
Tru1I	TTAA	5 cut(s)	554, 897, 1055, 1082, 1353
Tru9I	TTAA	5 cut(s)	554, 897, 1055, 1082, 1353
TscAI	CASTG	4 cut(s)	364, 655, 1463, 1569
TseFI	GTSAC	1 cut(s)	1234
TseI	GCWGC	4 cut(s)	595, 814, 1613, 1616
Tsp45I	GTSAC	1 cut(s)	1234
TspDTI	ATGAA	7 cut(s)	299, 534, 864, 918, 1325, 1662, 1742
TspGWI	ACGGA	1 cut(s)	748
TspRI	CASTG	4 cut(s)	364, 655, 1463, 1569
XceI	RCATGY	8 cut(s)	194, 217, 576, 679, 1096, 1168, 1371, 1545
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1532
XspI	CTAG	1 cut(s)	632
ZrmI	AGTACT	1 cut(s)	1409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.