RLG00000003525

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
49633776 .. 49635593
1818 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003525

Sequence Viewer

Length: 1818 bp
ATGCAAAGGTTTCTCTTCAAGAGAATCCAAAAACCACTCCAAAACCTTGCACTTTGTGCAAATTATATTACCACAACTATCCCAACTCATAACAATACCAATGCCACAACAATTCCTCATGTTGAAACATCAGACTCATGGGCAGGTATCATTTTTGACCTGGCCCAATGTGGCACCAGAACTGGGCATGCCCTATTTGAGGCCTCTCACATGCTCAGCTCTGGTACCAAACCAAATGGGTACTTGTTTGTTCAGATGGTCAGAGCTTCAGCTAAACTGGGCTGGGATTTCTTCAGCTTGCAACTTCATAGCTACATTTCACGATCTGGGTTTTGCTCCAATGTTTTTGTTTCCACTGCTCTGATCAATTTTTATATCGGAATCGGCTCATTGAGTGATGCTCACAAGGTGTTTGTTGAAATTCCTCAACCAAGTGTAGTTTCTTGGAATTCTTTGATTGCTGGATACGTACATTCTGGGCATTTCCGTAAAGCGTTGAGTTTGTTTCTTCAGCTGGAAAGGTCTGAAGTTTCTGTAGATTCATATTCGTTAACTGCAGCCTTAGGTGCATGTGGCCAACTGAGCTTTCTGCTGCTTGGCAAGACAGTTCACTCAAAGACTCTGAAACTAGGTTTGCAAAATAGCACTGTTGTTTTGAATTGTTTGATTGACATGTATGGTAAATGTGGATCACTTCAGGAGGCAATCCTTGTGTTTAATAACATGATAGAAAAGGATACTATTTCGTGGAATTCCATAATAGCGGCAAGTGCAAGAAACGGAAGCTTACAACAAGCATTCAGTTTTTTGCAGCAGATGCATAACCCTGATATAATCTCATACAATGAACTAATAAATGGCTTTTCGCGGTTTGGAGACGTAGAAGTTGCTATTAAACTTCTATTCAGTATGCCAAATCCAAATTCATCTTCCTGGAATTCGATAATTACAGGATATGTAAACAGGGGTCGAGCACGAGAAGCTCTGGATTTCTTCTGCAAAATGCACTTGGAAAATGTAGAAATGGATCAATTCACGTTTTCAAGCATTTTAAGTGGAGTTGCGGGTATTTCAGCTTTAACGTGGGGCATGCTAATCCATTGTTGCACCATAAAATTTGGCTTGGCTACATCAATTGTGGTTGGTAGTTCTTTGATTGACATGTACTCCAAATGCGGGAAGGTAAGCGATGCTGAAACAATCTTCCATTTACTTCCAGAGAAGAATTTGGTGACATGGAATGCAATGATCTCTGGCTTTTCTCGGAATGGTAATCCTTCAAAGGTGATGCTTCTTTTCGAGCAGATGAAAATGGAGAGAGATGTCAAGCCTGATGAGATCACATTCCTTAATGTTATATCTGCATGTTTACATAATCAAATTCCATTTGAGAATGCACTTCAGTACTTTGAATCAATGATCAAAGAGTATGGGATTGAGCCGACTCTTGAGCATTGTTGTTCTATGATTCGGCTAATGGGGCAGAGAGGGGAGGTGTGGAGAGCAGAGAAGATGATATTCCAGCTCGGTTTTGGGGCATGCGGATCAGTTTGGAGGGCACTGCTCGGTGCTTGTGGAGAGTGTAGAGATCTGAAAGTTGCCAAAAATGCAGCTGCAAAGGTGATACAGTTAGAAGGTGATGATGAATTTGTTTATGTTACGATGTCTAACCTGTATGCCCACTATGCAAAGTGGGAAGATGTGAGGATAGTGAGGAAGCTGATGAAGGAGAAAGGAATGAGAAAGGAAGCTGGTTATAGTTGGATTGAAATGGAAAATGTTATCTCAAATTCTGAATTACAATCAAGATTGATTTGA

Protein Analysis

606

Amino Acids

67.56

Weight (kDa)

7.54

Isoelectric Point (pI)

33.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 144 - 191 2.3e-09 PPR repeat family
PPR PF01535 147 - 175 3.2e-06 PPR repeat
PPR_2 PF13041 307 - 355 5.6e-12 PPR repeat family
PPR PF01535 311 - 339 6.1e-06 PPR repeat
PPR_2 PF13041 409 - 457 2.2e-10 PPR repeat family
PPR PF01535 411 - 438 2.9e-08 PPR repeat
E_motif PF20431 530 - 590 4.9e-14 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47460
fragaria_vesca FvH4_5g19050
rosa_chinensis RchiOBHm_Chr7g0203501
rosa_laevigata RLG00000003525
rosa_multiflora Rmu_sc0011994.1_g000002 Rmu_sc0028006.1_g000002
rosa_roxburghii Rroxscaffold_3G00253770
rosa_rugosa Rorug07G0076300
rosa_samantha Rh7AG205800 Rh7BG205700 Rh7CG218500 Rh7DG213000
rosa_wichuraiana Rw7G017980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 134
Acc65I GGTACC 1 cut(s) 224
AccB1I GGYRCC 2 cut(s) 173, 224
AccII CGCG 1 cut(s) 868
AciI CCGC 5 cut(s) 764, 868, 1064, 1176, 1542
AclWI GGATC 3 cut(s) 697, 1035, 1552
AcoI YGGCCR 1 cut(s) 574
AcuI CTGAAG 6 cut(s) 252, 277, 494, 546, 680, 1385
AdeI CACNNNGTG 2 cut(s) 56, 409
AfaI GTAC 5 cut(s) 226, 242, 471, 1166, 1406
AfiI CCNNNNNNNGG 3 cut(s) 183, 199, 1176
AflIII ACRYGT 2 cut(s) 672, 1161
AgsI TTSAA 8 cut(s) 19, 125, 419, 658, 1044, 1281, 1412, 1769
AjnI CCWGG 2 cut(s) 159, 932
AjuI GAANNNNNNNTTGG 8 cut(s) 424, 456, 570, 602, 907, 913, 939, 945
Alw21I GWGCWC 1 cut(s) 976
Alw26I GTCTC 1 cut(s) 870
AlwI GGATC 3 cut(s) 697, 1035, 1552
AoxI GGCC 3 cut(s) 162, 201, 574
ApeKI GCWGC 5 cut(s) 557, 592, 811, 1610, 1613
Asp718I GGTACC 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 163
AsuHPI GGTGA 4 cut(s) 1243, 1297, 1633, 1649
AxyI CCTNAGG 1 cut(s) 562
BaeGI GKGCMC 1 cut(s) 1561
BalI TGGCCA 1 cut(s) 576
BanI GGYRCC 2 cut(s) 173, 224
BauI CACGAG 1 cut(s) 975
Bbv12I GWGCWC 1 cut(s) 976
BbvI GCAGC 5 cut(s) 569, 579, 823, 1600, 1622
BccI CCATC 1 cut(s) 250
BciT130I CCWGG 2 cut(s) 161, 934
BciVI GTATCC 2 cut(s) 458, 730
BclI TGATCA 2 cut(s) 363, 1419
BcoDI GTCTC 1 cut(s) 870
BfaI CTAG 1 cut(s) 629
BfmI CTRYAG 2 cut(s) 534, 555
BfuAI ACCTGC 1 cut(s) 134
BfuI GTATCC 2 cut(s) 458, 730
BglII AGATCT 1 cut(s) 1588
BisI GCNGC 6 cut(s) 558, 593, 765, 812, 1611, 1614
BlpI GCTNAGC 1 cut(s) 215
BlsI GCNGC 6 cut(s) 559, 594, 766, 813, 1612, 1615
BmcAI AGTACT 1 cut(s) 1406
Bme1390I CCNGG 2 cut(s) 161, 934
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 2 cut(s) 175, 226
BmrFI CCNGG 2 cut(s) 161, 934
BmrI ACTGGG 2 cut(s) 192, 287
BmsI GCATC 4 cut(s) 388, 807, 1180, 1278
BmuI ACTGGG 2 cut(s) 192, 287
BplI GAGNNNNNCTC 2 cut(s) 385, 417
Bpu1102I GCTNAGC 1 cut(s) 215
BpuEI CTTGAG 1 cut(s) 1469
BsaAI YACGTR 1 cut(s) 469
BsaXI ACNNNNNCTCC 2 cut(s) 1151, 1181
Bsc4I CCNNNNNNNGG 3 cut(s) 183, 199, 1176
Bse1I ACTGG 2 cut(s) 187, 282
Bse21I CCTNAGG 1 cut(s) 562
Bse3DI GCAATG 1 cut(s) 1251
BseBI CCWGG 2 cut(s) 161, 934
BseLI CCNNNNNNNGG 3 cut(s) 183, 199, 1176
BseMI GCAATG 1 cut(s) 1251
BseMII CTCAG 2 cut(s) 229, 572
BseNI ACTGG 2 cut(s) 187, 282
BseSI GKGCMC 1 cut(s) 1561
BseXI GCAGC 5 cut(s) 569, 579, 823, 1600, 1622
BseYI CCCAGC 1 cut(s) 282
Bsh1236I CGCG 1 cut(s) 868
BshFI GGCC 3 cut(s) 164, 203, 576
BshNI GGYRCC 2 cut(s) 173, 224
BsiHKAI GWGCWC 1 cut(s) 976
BslI CCNNNNNNNGG 3 cut(s) 183, 199, 1176
BsmAI GTCTC 1 cut(s) 870
BsmBI CGTCTC 1 cut(s) 870
BsmI GAATGC 3 cut(s) 797, 1246, 1399
BsnI GGCC 3 cut(s) 164, 203, 576
Bsp1286I GDGCHC 2 cut(s) 976, 1561
Bsp143I GATC 9 cut(s) 323, 363, 689, 1027, 1248, 1338, 1419, 1544, 1588
Bsp1720I GCTNAGC 1 cut(s) 215
BspACI CCGC 5 cut(s) 764, 868, 1064, 1176, 1542
BspANI GGCC 3 cut(s) 164, 203, 576
BspCNI CTCAG 2 cut(s) 228, 573
BspFNI CGCG 1 cut(s) 868
BspLI GGNNCC 2 cut(s) 175, 226
BspMAI CTGCAG 1 cut(s) 559
BspMI ACCTGC 1 cut(s) 134
BspPI GGATC 3 cut(s) 697, 1035, 1552
BspT107I GGYRCC 2 cut(s) 173, 224
BsrDI GCAATG 1 cut(s) 1251
BsrI ACTGG 2 cut(s) 187, 282
BssMI GATC 9 cut(s) 323, 363, 689, 1027, 1248, 1338, 1419, 1544, 1588
BssSI CACGAG 1 cut(s) 975
Bst2BI CACGAG 1 cut(s) 975
Bst2UI CCWGG 2 cut(s) 161, 934
Bst4CI ACNGT 3 cut(s) 607, 649, 1629
Bst6I CTCTTC 1 cut(s) 20
BstAPI GCANNNNNTGC 2 cut(s) 56, 817
BstBAI YACGTR 1 cut(s) 469
BstC8I GCNNGC 4 cut(s) 189, 299, 1091, 1540
BstDEI CTNAG 3 cut(s) 215, 562, 581
BstENI CCTNNNNNAGG 1 cut(s) 197
BstFNI CGCG 1 cut(s) 868
BstKTI GATC 9 cut(s) 326, 366, 692, 1030, 1251, 1341, 1422, 1547, 1591
BstMAI GTCTC 1 cut(s) 870
BstMBI GATC 9 cut(s) 323, 363, 689, 1027, 1248, 1338, 1419, 1544, 1588
BstMWI GCNNNNNNNGC 9 cut(s) 56, 566, 582, 770, 817, 980, 1480, 1607, 1685
BstNI CCWGG 2 cut(s) 161, 934
BstNSI RCATGY 8 cut(s) 191, 214, 573, 676, 1093, 1165, 1368, 1542
BstSCI CCNGG 2 cut(s) 159, 932
BstSFI CTRYAG 2 cut(s) 534, 555
BstSLI GKGCMC 1 cut(s) 1561
BstSNI TACGTA 1 cut(s) 469
BstUI CGCG 1 cut(s) 868
BstV1I GCAGC 5 cut(s) 569, 579, 823, 1600, 1622
BstX2I RGATCY 1 cut(s) 1588
BstYI RGATCY 1 cut(s) 1588
Bsu36I CCTNAGG 1 cut(s) 562
BsuI GTATCC 2 cut(s) 458, 730
BsuRI GGCC 3 cut(s) 164, 203, 576
BtgZI GCGATG 1 cut(s) 1203
BtsI GCAGTG 2 cut(s) 354, 1559
BtsIMutI CAGTG 3 cut(s) 354, 645, 1559
BveI ACCTGC 1 cut(s) 134
Cac8I GCNNGC 4 cut(s) 189, 299, 1091, 1540
Cfr13I GGNCC 1 cut(s) 163
Csp6I GTAC 5 cut(s) 225, 241, 470, 1165, 1405
CviQI GTAC 5 cut(s) 225, 241, 470, 1165, 1405
DdeI CTNAG 3 cut(s) 215, 562, 581
DpnI GATC 9 cut(s) 325, 365, 691, 1029, 1250, 1340, 1421, 1546, 1590
DpnII GATC 9 cut(s) 323, 363, 689, 1027, 1248, 1338, 1419, 1544, 1588
DraIII CACNNNGTG 2 cut(s) 56, 409
EaeI YGGCCR 1 cut(s) 574
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
Eco105I TACGTA 1 cut(s) 469
Eco147I AGGCCT 1 cut(s) 203
Eco57I CTGAAG 6 cut(s) 252, 277, 494, 546, 680, 1385
Eco81I CCTNAGG 1 cut(s) 562
EcoNI CCTNNNNNAGG 1 cut(s) 197
EcoRI GAATTC 3 cut(s) 448, 751, 937
EcoRII CCWGG 2 cut(s) 159, 932
EcoT22I ATGCAT 1 cut(s) 822
Esp3I CGTCTC 1 cut(s) 870
FauI CCCGC 2 cut(s) 1057, 1169
FbaI TGATCA 2 cut(s) 363, 1419
Fnu4HI GCNGC 6 cut(s) 558, 593, 765, 812, 1611, 1614
Fsp4HI GCNGC 6 cut(s) 558, 593, 765, 812, 1611, 1614
FspBI CTAG 1 cut(s) 629
GluI GCNGC 6 cut(s) 558, 593, 765, 812, 1611, 1614
GsaI CCCAGC 1 cut(s) 286
HaeIII GGCC 3 cut(s) 164, 203, 576
HincII GTYRAC 1 cut(s) 552
HindII GTYRAC 1 cut(s) 552
HindIII AAGCTT 1 cut(s) 784
HinfI GANTC 8 cut(s) 24, 134, 381, 539, 619, 1412, 1444, 1468
HpaI GTTAAC 1 cut(s) 552
HphI GGTGA 4 cut(s) 1243, 1297, 1633, 1649
Hpy166II GTNNAC 4 cut(s) 552, 610, 961, 1370
Hpy188III TCNNGA 7 cut(s) 19, 321, 698, 986, 1217, 1448, 1806
Hpy8I GTNNAC 4 cut(s) 552, 610, 961, 1370
HpyAV CCTTC 4 cut(s) 1174, 1287, 1628, 1720
HpyCH4III ACNGT 3 cut(s) 607, 649, 1629
HpyCH4IV ACGT 4 cut(s) 468, 879, 1037, 1082
HpyF10VI GCNNNNNNNGC 9 cut(s) 56, 566, 582, 770, 817, 980, 1480, 1607, 1685
HpyF3I CTNAG 3 cut(s) 215, 562, 581
HpySE526I ACGT 4 cut(s) 468, 879, 1037, 1082
KpnI GGTACC 1 cut(s) 228
Ksp22I TGATCA 2 cut(s) 363, 1419
KspAI GTTAAC 1 cut(s) 552
Kzo9I GATC 9 cut(s) 323, 363, 689, 1027, 1248, 1338, 1419, 1544, 1588
LmnI GCTCC 1 cut(s) 341
Lsp1109I GCAGC 5 cut(s) 569, 579, 823, 1600, 1622
LweI GCATC 4 cut(s) 388, 807, 1180, 1278
MaeI CTAG 1 cut(s) 629
MaeII ACGT 4 cut(s) 468, 879, 1037, 1082
MaeIII GTNAC 2 cut(s) 1231, 1657
MalI GATC 9 cut(s) 325, 365, 691, 1029, 1250, 1340, 1421, 1546, 1590
MboI GATC 9 cut(s) 323, 363, 689, 1027, 1248, 1338, 1419, 1544, 1588
MboII GAAGA 9 cut(s) 7, 283, 500, 921, 985, 1195, 1234, 1522, 1709
MfeI CAATTG 1 cut(s) 1134
MflI RGATCY 1 cut(s) 1588
MhlI GDGCHC 2 cut(s) 976, 1561
MlsI TGGCCA 1 cut(s) 576
MluNI TGGCCA 1 cut(s) 576
MlyI GAGTC 3 cut(s) 128, 613, 1438
MmeI TCCRAC 1 cut(s) 1742
Mox20I TGGCCA 1 cut(s) 576
Mph1103I ATGCAT 1 cut(s) 822
MscI TGGCCA 1 cut(s) 576
MseI TTAA 6 cut(s) 551, 717, 894, 1052, 1079, 1350
Msp20I TGGCCA 1 cut(s) 576
MspA1I CMGCKG 2 cut(s) 514, 1613
MspR9I CCNGG 2 cut(s) 161, 934
MunI CAATTG 1 cut(s) 1134
Mva1269I GAATGC 3 cut(s) 797, 1246, 1399
MvaI CCWGG 2 cut(s) 161, 934
MvnI CGCG 1 cut(s) 868
MwoI GCNNNNNNNGC 9 cut(s) 56, 566, 582, 770, 817, 980, 1480, 1607, 1685
NdeII GATC 9 cut(s) 323, 363, 689, 1027, 1248, 1338, 1419, 1544, 1588
NlaIV GGNNCC 2 cut(s) 175, 226
NmuCI GTSAC 1 cut(s) 1231
NsiI ATGCAT 1 cut(s) 822
NspI RCATGY 8 cut(s) 191, 214, 573, 676, 1093, 1165, 1368, 1542
PaeI GCATGC 3 cut(s) 191, 1093, 1542
PceI AGGCCT 1 cut(s) 203
PciI ACATGT 2 cut(s) 672, 1161
PctI GAATGC 3 cut(s) 797, 1246, 1399
PfeI GAWTC 5 cut(s) 24, 381, 539, 1412, 1468
PfoI TCCNGGA 1 cut(s) 932
PkrI GCNGC 6 cut(s) 559, 594, 766, 813, 1612, 1615
PleI GAGTC 3 cut(s) 128, 613, 1438
PpsI GAGTC 3 cut(s) 128, 613, 1438
Ppu21I YACGTR 1 cut(s) 469
PscI ACATGT 2 cut(s) 672, 1161
Psp6I CCWGG 2 cut(s) 159, 932
PspFI CCCAGC 1 cut(s) 282
PspGI CCWGG 2 cut(s) 159, 932
PspN4I GGNNCC 2 cut(s) 175, 226
PspPI GGNCC 1 cut(s) 163
PstI CTGCAG 1 cut(s) 559
PsuI RGATCY 1 cut(s) 1588
PvuII CAGCTG 2 cut(s) 514, 1613
RsaI GTAC 5 cut(s) 226, 242, 471, 1166, 1406
RsaNI GTAC 5 cut(s) 225, 241, 470, 1165, 1405
SaqAI TTAA 6 cut(s) 551, 717, 894, 1052, 1079, 1350
SatI GCNGC 6 cut(s) 558, 593, 765, 812, 1611, 1614
Sau3AI GATC 9 cut(s) 323, 363, 689, 1027, 1248, 1338, 1419, 1544, 1588
Sau96I GGNCC 1 cut(s) 163
ScaI AGTACT 1 cut(s) 1406
SchI GAGTC 3 cut(s) 128, 613, 1438
ScrFI CCNGG 2 cut(s) 161, 934
SduI GDGCHC 2 cut(s) 976, 1561
SfaNI GCATC 4 cut(s) 388, 807, 1180, 1278
SfcI CTRYAG 2 cut(s) 534, 555
SmlI CTYRAG 1 cut(s) 1448
SmoI CTYRAG 1 cut(s) 1448
SnaBI TACGTA 1 cut(s) 469
SphI GCATGC 3 cut(s) 191, 1093, 1542
SseBI AGGCCT 1 cut(s) 203
SsiI CCGC 5 cut(s) 764, 868, 1064, 1176, 1542
SspMI CTAG 1 cut(s) 629
StuI AGGCCT 1 cut(s) 203
StyD4I CCNGG 2 cut(s) 159, 932
TaaI ACNGT 3 cut(s) 607, 649, 1629
TaiI ACGT 4 cut(s) 471, 882, 1040, 1085
TaqI TCGA 3 cut(s) 941, 970, 1299
TatI WGTACW 2 cut(s) 1164, 1404
TauI GCSGC 1 cut(s) 767
TfiI GAWTC 5 cut(s) 24, 381, 539, 1412, 1468
Tru1I TTAA 6 cut(s) 551, 717, 894, 1052, 1079, 1350
Tru9I TTAA 6 cut(s) 551, 717, 894, 1052, 1079, 1350
TscAI CASTG 3 cut(s) 361, 652, 1566
TseFI GTSAC 1 cut(s) 1231
TseI GCWGC 5 cut(s) 557, 592, 811, 1610, 1613
Tsp45I GTSAC 1 cut(s) 1231
TspDTI ATGAA 7 cut(s) 296, 531, 861, 915, 1322, 1659, 1739
TspGWI ACGGA 2 cut(s) 476, 795
TspRI CASTG 3 cut(s) 361, 652, 1566
XagI CCTNNNNNAGG 1 cut(s) 197
XceI RCATGY 8 cut(s) 191, 214, 573, 676, 1093, 1165, 1368, 1542
XcmI CCANNNNNNNNNTGG 1 cut(s) 1529
XspI CTAG 1 cut(s) 629
ZrmI AGTACT 1 cut(s) 1406
Zsp2I ATGCAT 1 cut(s) 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.