Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0017164

Physical Location & Seq

Genomic Coordinates Reverse (-)

47848439 .. 47850758

Gene Structure 2320 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00253770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1869 bp

ATGATAAATGTGGATTTAACGTTAGAGTGGTTCATTGTGTTGAGCTATGCAAAGGTTTCTCTTCAAGGGAATCCAGAAACCCTCCAAAACCTTGCACTTTGTGCAAATTATATTACCACAACTATCCCAACTCATAACAATACCAATGCCACTACAATTCCTTATGTTGAAACTTCAGACTCATGGGCAAGTATCATTTTTGACCTTGCCCAATGTGGCACCAGAACTGGGCATGCCTTATGTGAGGCCTCTCACATGCTCAGCTCTGGGACCAAACCAAATGGGTACTTGTTTGTTCAGATGGTCAGAGCTTCAGCTAAACTGGGCTGGGATTTCTTCAGCTTGCAACTTCATAGCTACATTTTACGATCTGGGTTTTGCTCCAATGTTTTTGTTTCCACTGCTCTGATCAATTTTTATATCGGAATCGGCTCATTGAGTGATGCTCGCAAGGTGTTTGTTGAAATTCCTCATCCAAGTGTAGTTTCTTGGAATTCTTTGATTTCTGGATACGTGCATTCTGGGCAGTTCAGTAAAGCGTTGAGTTTGTTTCTTCAGCTGGAAAGGTCTGAAGTTGCTGTAGATTCATATTCCTTAACAGCGGCCTTAGGTGCATGTGGCCAACTGAGCTTTCTGCAGCTTGGCAAGACAGTTCACTCAAAGACTGTGAAACTAGGTTTGGAAAGTAGCACTGTTGTTTTGAATTGTTTGATTGACATGTATGGGAAATGTGGATCACTTCAGGAGGCAATCCTTGTGTTTAATAACATGATAGAAAAGGATACTATTTCGTGGAATTCCATAATAGCGGCAAGTGCAAGAAATGGAAGCTTACAACAAGCATTCAGTTTTTTGCAGCAGATGCATAACCCTGATATAATCTCATACAATGAACTGATAAATGGCTTTGTGCGGTTTGGAGATGTAGAAGATGCTATTAAACTTCTATTCAGTATGCCAAATCCAAATTCATCTTCCTGGAATTCGATAATTACAGGATATGTAAACAGGGGTCGAGCAAGAGGAGCTTTGGATTTCTTCTGCAAAATGCACTTGGAAAATGTAGAAATGGATCAATTCACGTTTTCAAGCATTTTAAGTGGAGTTGCAGGTATTTCGGCTTTAACGTGGGGCATGCTAATCCATTGTTGCACCATAAAATTTGGTTTGGCTACATCAATTGTGGTTGGTAGTTCTTTGATTGACATGTACTCCAAATGCGGGAAGATAAGCGATGCTGAAACAATCTTCCATTTACTTCCAGAGAAGAATTTGGTGACATGGAATTCAATGATCTCTGGCTTTTCTTGGAACGGTAATCCTTCAAAGATGATGCTCCTTTTCGAGCAGATGAAAATGGAGAGAGATGTCAAGCCTGACGAGATCACATTCCTTAATGTTATATCTGCATGTTTACATAATCAAATTCCATTCGAGAATGCACTTCAGTACTTTGAATCAATGATCAAAGAGTATGGGATTGAGCCAACTCTTGAGCACTGTTGTTCTATGATTCGGCTAATGGGGCAGAGAGGGGAGGTGTGGAGAGCAGAGAAGATGATATTCCAGCTCGGTTTTGGGACATGCGGATCAGTTTGGAGGGCACTGCTCGGTGCTTGTGGAAAGTGTAGAGATTTGAAAGTTGCCAAAAATGCAGCTGCAAAGGTGATACGGTTAGAAGGTGAAGATGAATTTGTTTATGTTACGATGTCTAACTTGTATGCACACTATGCAAAGTGGGAAGATGTGAGGGTAGCGAGGAAGCTGATGAAGGAGAAAGGAATGAGAAAGGAAGCTGGTTATAGTTGGATTGAAATGGAAAATGTTATCTCAAATTCTGAATTACAATACAGATTGATTTCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

622

Amino Acids

69.32

Weight (kDa)

6.41

Isoelectric Point (pI)

31.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	159 - 206	3.6e-09	PPR repeat family
PPR	PF01535	162 - 190	4.7e-07	PPR repeat
PPR_2	PF13041	322 - 370	3.4e-11	PPR repeat family
PPR_2	PF13041	424 - 472	1.3e-09	PPR repeat family
PPR	PF01535	426 - 453	2.3e-07	PPR repeat
E_motif	PF20431	545 - 605	3.6e-13	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47460
fragaria_vesca	FvH4_5g19050
rosa_chinensis	RchiOBHm_Chr7g0203501
rosa_laevigata	RLG00000003525
rosa_multiflora	Rmu_sc0011994.1_g000002 Rmu_sc0028006.1_g000002
rosa_roxburghii	Rroxscaffold_3G00253770
rosa_rugosa	Rorug07G0076300
rosa_samantha	Rh7AG205800 Rh7BG205700 Rh7CG218500 Rh7DG213000
rosa_wichuraiana	Rw7G017980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1100
AccB1I	GGYRCC	1 cut(s)	218
AciI	CCGC	5 cut(s)	602, 809, 913, 1221, 1587
AclI	AACGTT	1 cut(s)	20
AclWI	GGATC	3 cut(s)	742, 1080, 1597
AcoI	YGGCCR	1 cut(s)	619
AcuI	CTGAAG	7 cut(s)	159, 297, 322, 539, 591, 725, 1430
AdeI	CACNNNGTG	1 cut(s)	101
AfaI	GTAC	3 cut(s)	287, 1211, 1451
AfiI	CCNNNNNNNGG	2 cut(s)	228, 1221
AflIII	ACRYGT	2 cut(s)	717, 1206
AjnI	CCWGG	1 cut(s)	977
Alw21I	GWGCWC	1 cut(s)	1500
AlwI	GGATC	3 cut(s)	742, 1080, 1597
AoxI	GGCC	3 cut(s)	246, 603, 619
ApeKI	GCWGC	4 cut(s)	637, 856, 1655, 1658
AspS9I	GGNCC	1 cut(s)	270
AsuHPI	GGTGA	3 cut(s)	1288, 1678, 1694
AvaII	GGWCC	1 cut(s)	270
AxyI	CCTNAGG	1 cut(s)	607
BaeGI	GKGCMC	1 cut(s)	1606
BalI	TGGCCA	1 cut(s)	621
BanI	GGYRCC	1 cut(s)	218
Bbv12I	GWGCWC	1 cut(s)	1500
BbvI	GCAGC	4 cut(s)	649, 868, 1645, 1667
BccI	CCATC	1 cut(s)	295
BcgI	CGANNNNNNTGC	2 cut(s)	1098, 1132
BciT130I	CCWGG	1 cut(s)	979
BciVI	GTATCC	2 cut(s)	503, 775
BclI	TGATCA	2 cut(s)	408, 1464
BfaI	CTAG	1 cut(s)	674
BfmI	CTRYAG	2 cut(s)	579, 635
BfuAI	ACCTGC	1 cut(s)	1100
BfuI	GTATCC	2 cut(s)	503, 775
BisI	GCNGC	6 cut(s)	603, 638, 810, 857, 1656, 1659
BlpI	GCTNAGC	1 cut(s)	260
BlsI	GCNGC	6 cut(s)	604, 639, 811, 858, 1657, 1660
BmcAI	AGTACT	1 cut(s)	1451
Bme1390I	CCNGG	1 cut(s)	979
Bme18I	GGWCC	1 cut(s)	270
BmgT120I	GGNCC	1 cut(s)	270
BmiI	GGNNCC	2 cut(s)	220, 271
BmrFI	CCNGG	1 cut(s)	979
BmrI	ACTGGG	2 cut(s)	237, 332
BmsI	GCATC	5 cut(s)	433, 852, 922, 1225, 1323
BmuI	ACTGGG	2 cut(s)	237, 332
BplI	GAGNNNNNCTC	2 cut(s)	430, 462
Bpu1102I	GCTNAGC	1 cut(s)	260
BpuEI	CTTGAG	1 cut(s)	1514
BsaAI	YACGTR	1 cut(s)	514
BsaXI	ACNNNNNCTCC	2 cut(s)	1196, 1226
Bsc4I	CCNNNNNNNGG	2 cut(s)	228, 1221
Bse1I	ACTGG	2 cut(s)	232, 327
Bse21I	CCTNAGG	1 cut(s)	607
BseBI	CCWGG	1 cut(s)	979
BseGI	GGATG	1 cut(s)	472
BseLI	CCNNNNNNNGG	2 cut(s)	228, 1221
BseMII	CTCAG	2 cut(s)	274, 617
BseNI	ACTGG	2 cut(s)	232, 327
BseRI	GAGGAG	1 cut(s)	1038
BseSI	GKGCMC	1 cut(s)	1606
BseXI	GCAGC	4 cut(s)	649, 868, 1645, 1667
BseYI	CCCAGC	1 cut(s)	327
BshFI	GGCC	3 cut(s)	248, 605, 621
BshNI	GGYRCC	1 cut(s)	218
BsiHKAI	GWGCWC	1 cut(s)	1500
BslFI	GGGAC	2 cut(s)	283, 1594
BslI	CCNNNNNNNGG	2 cut(s)	228, 1221
BsmFI	GGGAC	2 cut(s)	283, 1594
BsmI	GAATGC	3 cut(s)	517, 842, 1444
BsnI	GGCC	3 cut(s)	248, 605, 621
Bsp1286I	GDGCHC	2 cut(s)	1500, 1606
Bsp143I	GATC	8 cut(s)	368, 408, 734, 1072, 1293, 1383, 1464, 1589
Bsp1720I	GCTNAGC	1 cut(s)	260
BspACI	CCGC	5 cut(s)	602, 809, 913, 1221, 1587
BspANI	GGCC	3 cut(s)	248, 605, 621
BspCNI	CTCAG	2 cut(s)	273, 618
BspLI	GGNNCC	2 cut(s)	220, 271
BspMAI	CTGCAG	1 cut(s)	639
BspMI	ACCTGC	1 cut(s)	1100
BspPI	GGATC	3 cut(s)	742, 1080, 1597
BspT107I	GGYRCC	1 cut(s)	218
BsrI	ACTGG	2 cut(s)	232, 327
BssMI	GATC	8 cut(s)	368, 408, 734, 1072, 1293, 1383, 1464, 1589
Bst2UI	CCWGG	1 cut(s)	979
Bst4CI	ACNGT	6 cut(s)	652, 667, 694, 1316, 1502, 1674
Bst6I	CTCTTC	1 cut(s)	66
BstAPI	GCANNNNNTGC	3 cut(s)	101, 862, 1730
BstBAI	YACGTR	1 cut(s)	514
BstC8I	GCNNGC	4 cut(s)	234, 344, 448, 1136
BstDEI	CTNAG	3 cut(s)	260, 607, 626
BstF5I	GGATG	1 cut(s)	472
BstKTI	GATC	8 cut(s)	371, 411, 737, 1075, 1296, 1386, 1467, 1592
BstMBI	GATC	8 cut(s)	368, 408, 734, 1072, 1293, 1383, 1464, 1589
BstNI	CCWGG	1 cut(s)	979
BstNSI	RCATGY	8 cut(s)	236, 259, 618, 721, 1138, 1210, 1413, 1587
BstSCI	CCNGG	1 cut(s)	977
BstSFI	CTRYAG	2 cut(s)	579, 635
BstSLI	GKGCMC	1 cut(s)	1606
BstV1I	GCAGC	4 cut(s)	649, 868, 1645, 1667
Bsu36I	CCTNAGG	1 cut(s)	607
BsuI	GTATCC	2 cut(s)	503, 775
BsuRI	GGCC	3 cut(s)	248, 605, 621
BtgZI	GCGATG	1 cut(s)	1248
BtsCI	GGATG	1 cut(s)	472
BtsI	GCAGTG	2 cut(s)	399, 1604
BtsIMutI	CAGTG	4 cut(s)	399, 690, 1498, 1604
BveI	ACCTGC	1 cut(s)	1100
Cac8I	GCNNGC	4 cut(s)	234, 344, 448, 1136
Cfr13I	GGNCC	1 cut(s)	270
Csp6I	GTAC	3 cut(s)	286, 1210, 1450
CviQI	GTAC	3 cut(s)	286, 1210, 1450
DdeI	CTNAG	3 cut(s)	260, 607, 626
DpnI	GATC	8 cut(s)	370, 410, 736, 1074, 1295, 1385, 1466, 1591
DpnII	GATC	8 cut(s)	368, 408, 734, 1072, 1293, 1383, 1464, 1589
DraIII	CACNNNGTG	1 cut(s)	101
EaeI	YGGCCR	1 cut(s)	619
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
Eco147I	AGGCCT	1 cut(s)	248
Eco47I	GGWCC	1 cut(s)	270
Eco57I	CTGAAG	7 cut(s)	159, 297, 322, 539, 591, 725, 1430
Eco81I	CCTNAGG	1 cut(s)	607
EcoRI	GAATTC	4 cut(s)	493, 796, 982, 1285
EcoRII	CCWGG	1 cut(s)	977
EcoT22I	ATGCAT	1 cut(s)	867
FalI	AAGNNNNNCTT	2 cut(s)	1012, 1044
FaqI	GGGAC	2 cut(s)	283, 1594
FauI	CCCGC	1 cut(s)	1214
FbaI	TGATCA	2 cut(s)	408, 1464
Fnu4HI	GCNGC	6 cut(s)	603, 638, 810, 857, 1656, 1659
FokI	GGATG	1 cut(s)	459
Fsp4HI	GCNGC	6 cut(s)	603, 638, 810, 857, 1656, 1659
FspBI	CTAG	1 cut(s)	674
GluI	GCNGC	6 cut(s)	603, 638, 810, 857, 1656, 1659
GsaI	CCCAGC	1 cut(s)	331
HaeIII	GGCC	3 cut(s)	248, 605, 621
HindIII	AAGCTT	1 cut(s)	829
HinfI	GANTC	6 cut(s)	70, 179, 426, 584, 1457, 1513
HphI	GGTGA	3 cut(s)	1288, 1678, 1694
Hpy166II	GTNNAC	3 cut(s)	655, 1006, 1415
Hpy188I	TCNGA	7 cut(s)	178, 300, 308, 408, 425, 571, 1840
Hpy188III	TCNNGA	6 cut(s)	74, 507, 743, 1262, 1435, 1493
Hpy8I	GTNNAC	3 cut(s)	655, 1006, 1415
HpyAV	CCTTC	3 cut(s)	1332, 1673, 1765
HpyCH4III	ACNGT	6 cut(s)	652, 667, 694, 1316, 1502, 1674
HpyCH4IV	ACGT	4 cut(s)	20, 513, 1082, 1127
HpyF3I	CTNAG	3 cut(s)	260, 607, 626
HpySE526I	ACGT	4 cut(s)	20, 513, 1082, 1127
Ksp22I	TGATCA	2 cut(s)	408, 1464
Kzo9I	GATC	8 cut(s)	368, 408, 734, 1072, 1293, 1383, 1464, 1589
LmnI	GCTCC	3 cut(s)	386, 1025, 1341
Lsp1109I	GCAGC	4 cut(s)	649, 868, 1645, 1667
LweI	GCATC	5 cut(s)	433, 852, 922, 1225, 1323
MaeI	CTAG	1 cut(s)	674
MaeII	ACGT	4 cut(s)	20, 513, 1082, 1127
MaeIII	GTNAC	2 cut(s)	1276, 1702
MalI	GATC	8 cut(s)	370, 410, 736, 1074, 1295, 1385, 1466, 1591
MboI	GATC	8 cut(s)	368, 408, 734, 1072, 1293, 1383, 1464, 1589
MfeI	CAATTG	1 cut(s)	1179
MhlI	GDGCHC	2 cut(s)	1500, 1606
MlsI	TGGCCA	1 cut(s)	621
MluNI	TGGCCA	1 cut(s)	621
MlyI	GAGTC	1 cut(s)	173
MmeI	TCCRAC	1 cut(s)	1787
Mox20I	TGGCCA	1 cut(s)	621
Mph1103I	ATGCAT	1 cut(s)	867
MscI	TGGCCA	1 cut(s)	621
MseI	TTAA	8 cut(s)	17, 596, 762, 939, 1097, 1124, 1395, 1867
MslI	CAYNNNNRTG	1 cut(s)	477
Msp20I	TGGCCA	1 cut(s)	621
MspA1I	CMGCKG	3 cut(s)	559, 602, 1658
MspR9I	CCNGG	1 cut(s)	979
MunI	CAATTG	1 cut(s)	1179
Mva1269I	GAATGC	3 cut(s)	517, 842, 1444
MvaI	CCWGG	1 cut(s)	979
NdeII	GATC	8 cut(s)	368, 408, 734, 1072, 1293, 1383, 1464, 1589
NlaIV	GGNNCC	2 cut(s)	220, 271
NmuCI	GTSAC	1 cut(s)	1276
NsiI	ATGCAT	1 cut(s)	867
NspI	RCATGY	8 cut(s)	236, 259, 618, 721, 1138, 1210, 1413, 1587
PaeI	GCATGC	2 cut(s)	236, 1138
PceI	AGGCCT	1 cut(s)	248
PciI	ACATGT	2 cut(s)	717, 1206
PcsI	WCGNNNNNNNCGW	1 cut(s)	1124
PctI	GAATGC	3 cut(s)	517, 842, 1444
PfeI	GAWTC	5 cut(s)	70, 426, 584, 1457, 1513
PfoI	TCCNGGA	1 cut(s)	977
PkrI	GCNGC	6 cut(s)	604, 639, 811, 858, 1657, 1660
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
Ppu21I	YACGTR	1 cut(s)	514
PscI	ACATGT	2 cut(s)	717, 1206
Psp1406I	AACGTT	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	977
PspFI	CCCAGC	1 cut(s)	327
PspGI	CCWGG	1 cut(s)	977
PspN4I	GGNNCC	2 cut(s)	220, 271
PspPI	GGNCC	1 cut(s)	270
PstI	CTGCAG	1 cut(s)	639
PvuII	CAGCTG	2 cut(s)	559, 1658
RsaI	GTAC	3 cut(s)	287, 1211, 1451
RsaNI	GTAC	3 cut(s)	286, 1210, 1450
RseI	CAYNNNNRTG	1 cut(s)	477
SaqAI	TTAA	8 cut(s)	17, 596, 762, 939, 1097, 1124, 1395, 1867
SatI	GCNGC	6 cut(s)	603, 638, 810, 857, 1656, 1659
Sau3AI	GATC	8 cut(s)	368, 408, 734, 1072, 1293, 1383, 1464, 1589
Sau96I	GGNCC	1 cut(s)	270
ScaI	AGTACT	1 cut(s)	1451
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	979
SduI	GDGCHC	2 cut(s)	1500, 1606
SfaNI	GCATC	5 cut(s)	433, 852, 922, 1225, 1323
SfcI	CTRYAG	2 cut(s)	579, 635
SinI	GGWCC	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	477
SmlI	CTYRAG	1 cut(s)	1493
SmoI	CTYRAG	1 cut(s)	1493
SphI	GCATGC	2 cut(s)	236, 1138
SseBI	AGGCCT	1 cut(s)	248
SsiI	CCGC	5 cut(s)	602, 809, 913, 1221, 1587
SspMI	CTAG	1 cut(s)	674
StuI	AGGCCT	1 cut(s)	248
StyD4I	CCNGG	1 cut(s)	977
TaaI	ACNGT	6 cut(s)	652, 667, 694, 1316, 1502, 1674
TaiI	ACGT	4 cut(s)	23, 516, 1085, 1130
TaqI	TCGA	4 cut(s)	986, 1015, 1344, 1434
TatI	WGTACW	2 cut(s)	1209, 1449
TauI	GCSGC	2 cut(s)	605, 812
TfiI	GAWTC	5 cut(s)	70, 426, 584, 1457, 1513
Tru1I	TTAA	8 cut(s)	17, 596, 762, 939, 1097, 1124, 1395, 1867
Tru9I	TTAA	8 cut(s)	17, 596, 762, 939, 1097, 1124, 1395, 1867
TscAI	CASTG	4 cut(s)	406, 697, 1505, 1611
TseFI	GTSAC	1 cut(s)	1276
TseI	GCWGC	4 cut(s)	637, 856, 1655, 1658
Tsp45I	GTSAC	1 cut(s)	1276
TspDTI	ATGAA	8 cut(s)	22, 341, 576, 906, 960, 1367, 1704, 1784
TspRI	CASTG	4 cut(s)	406, 697, 1505, 1611
VpaK11BI	GGWCC	1 cut(s)	270
XceI	RCATGY	8 cut(s)	236, 259, 618, 721, 1138, 1210, 1413, 1587
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1574
XspI	CTAG	1 cut(s)	674
ZrmI	AGTACT	1 cut(s)	1451
Zsp2I	ATGCAT	1 cut(s)	867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.