Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028006.1

Orthogroup ID

OG0017164

Physical Location & Seq

Genomic Coordinates Reverse (-)

3719 .. 5524

Gene Structure 1806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028006.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1806 bp

atgcaaaggtttctcttcaagaggatccaaaaacccctccaaaaccttgcactttgtgcaaattatattaccacaactatcccaactcataacaataccaatgccactacaattcctcatgttgaaacttcagactcatgggcaagtatcatttttgaccttgctcaatgtggcaccagaactgggcatgccctatttgaggcatctcacatgctcatctctggtaccaaaccaaatgggtacttgtttgttcagatggtcagagcttcagccaacctgggctgggatttcttcagcttgcaacttcatagctacattttacgatctgggttttgctccaatgtttttgtttccactgctctgatcaatttttatatcgggatcggctcattgagtgatgctcgcaaggtgtttgttgaaattcctcatccaagtgtagtttcttggaattctttgatttctggatacgtgcattctgggcagttccgtaaagcgttgagtgtgtttcttcagctggaaaggtctgaagtttctgtagattcatattcgttaacagcggccttaggtgcatgtggccaactgagctttctgcagcttggcaagacagttcactcaaagactgtgaaactaggtttggaaaatagcactgttgttttgaattgtttgattgacatgtatgggaaatgtggatcacttcaggaggcaatccttgtgtttaataacatgatagaaaaggatactatttcgtggaattccgtaatagcggcaagtgcaagaaatggaagcttacaacaagcattcagttttttgcagcagatgcataaccctgatataatctcatacaatgaactgataaatggcttttcgcggtttggagacgtagaagatgctattaaacttctattcagtatgccaaatccaaattcatcttcctggaattcgataattacaggatatgtaaacaggggtcgagcacgagaagctttggatttcttctgcaaaatgcacttggaaaatgtagaaatggatcaattcacgttttcaagcatattaagtggagttgcaggtatttcggctttaacgtggggcatgctaatccattgttgcaccataaaatttggtttggctgcatcaattgtggttggtagttctttgattgacatgtactccaaatgcgggaagataagcgatgctgaaacaatcttccatttacttccagagaagaatttggtgacatggaattcactgatctctggcttttcttggaacggtaatccttcaaagatgatgctccttttcgagcagatgaaaatggagagagatgtcaagcctgacgagatcacatttcttaatgttatatctgcatgtttacataatcaaattccattcgagaatgcacttcagtactttgaatcaatgatcaaagagtatgggattgagccaactcttgagcactgttgttctatgattcggctaatggggcagagaggggaggtgtggagagcagagaagatgatattccaactcggttttgggacatgcggatcagtttggagggcactgctcggtgcttgtggaaagtgtagagatttgaaagtagccaaaaatgcagctgcaaaggtgatacagttagaaggtgaagatgaatttgtttatgttacgatgtctaacttgtatgcacactatgcaaagtgggaagatgtgagggtagcgaggaagctgatgaaggagaaaggaatgagaaaggaagctggttatagttggattgaaatggaaaatgttatctcaaattctgaattacaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

601

Amino Acids

67.22

Weight (kDa)

6.93

Isoelectric Point (pI)

31.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47460
fragaria_vesca	FvH4_5g19050
rosa_chinensis	RchiOBHm_Chr7g0203501
rosa_laevigata	RLG00000003525
rosa_multiflora	Rmu_sc0011994.1_g000002 Rmu_sc0028006.1_g000002
rosa_roxburghii	Rroxscaffold_3G00253770
rosa_rugosa	Rorug07G0076300
rosa_samantha	Rh7AG205800 Rh7BG205700 Rh7CG218500 Rh7DG213000
rosa_wichuraiana	Rw7G017980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1055
Acc65I	GGTACC	1 cut(s)	224
AccB1I	GGYRCC	2 cut(s)	173, 224
AccII	CGCG	1 cut(s)	868
AciI	CCGC	5 cut(s)	557, 764, 868, 1176, 1542
AclWI	GGATC	6 cut(s)	19, 32, 389, 697, 1035, 1552
AcoI	YGGCCR	1 cut(s)	574
AcuI	CTGAAG	7 cut(s)	114, 252, 277, 494, 546, 680, 1385
AdeI	CACNNNGTG	1 cut(s)	56
AfaI	GTAC	4 cut(s)	226, 242, 1166, 1406
AfiI	CCNNNNNNNGG	4 cut(s)	183, 199, 283, 1176
AflIII	ACRYGT	2 cut(s)	672, 1161
AgsI	TTSAA	9 cut(s)	19, 125, 419, 658, 1044, 1281, 1412, 1594, 1769
AjnI	CCWGG	2 cut(s)	276, 932
Alw21I	GWGCWC	2 cut(s)	976, 1455
Alw26I	GTCTC	1 cut(s)	870
AlwI	GGATC	6 cut(s)	19, 32, 389, 697, 1035, 1552
AoxI	GGCC	2 cut(s)	558, 574
ApeKI	GCWGC	5 cut(s)	592, 811, 1127, 1610, 1613
Asp718I	GGTACC	1 cut(s)	224
AsuHPI	GGTGA	3 cut(s)	1243, 1633, 1649
AxyI	CCTNAGG	1 cut(s)	562
BaeGI	GKGCMC	1 cut(s)	1561
BalI	TGGCCA	1 cut(s)	576
BamHI	GGATCC	1 cut(s)	24
BanI	GGYRCC	2 cut(s)	173, 224
BauI	CACGAG	1 cut(s)	975
Bbv12I	GWGCWC	2 cut(s)	976, 1455
BbvI	GCAGC	5 cut(s)	604, 823, 1114, 1600, 1622
BccI	CCATC	1 cut(s)	250
BcgI	CGANNNNNNTGC	2 cut(s)	1053, 1087
BciT130I	CCWGG	2 cut(s)	278, 934
BciVI	GTATCC	2 cut(s)	458, 730
BclI	TGATCA	2 cut(s)	363, 1419
BcoDI	GTCTC	1 cut(s)	870
BfaI	CTAG	1 cut(s)	629
BfmI	CTRYAG	2 cut(s)	534, 590
BfuAI	ACCTGC	1 cut(s)	1055
BfuI	GTATCC	2 cut(s)	458, 730
BisI	GCNGC	7 cut(s)	558, 593, 765, 812, 1128, 1611, 1614
BlsI	GCNGC	7 cut(s)	559, 594, 766, 813, 1129, 1612, 1615
BmcAI	AGTACT	1 cut(s)	1406
Bme1390I	CCNGG	2 cut(s)	278, 934
BmiI	GGNNCC	3 cut(s)	26, 175, 226
BmrFI	CCNGG	2 cut(s)	278, 934
BmrI	ACTGGG	1 cut(s)	192
BmsI	GCATC	7 cut(s)	212, 388, 807, 877, 1139, 1180, 1278
BmuI	ACTGGG	1 cut(s)	192
BplI	GAGNNNNNCTC	2 cut(s)	385, 417
BpuEI	CTTGAG	1 cut(s)	1469
BsaAI	YACGTR	1 cut(s)	469
BsaJI	CCNNGG	1 cut(s)	277
BsaXI	ACNNNNNCTCC	2 cut(s)	1151, 1181
Bsc4I	CCNNNNNNNGG	4 cut(s)	183, 199, 283, 1176
Bse1I	ACTGG	1 cut(s)	187
Bse21I	CCTNAGG	1 cut(s)	562
BseBI	CCWGG	2 cut(s)	278, 934
BseDI	CCNNGG	1 cut(s)	277
BseGI	GGATG	1 cut(s)	427
BseLI	CCNNNNNNNGG	4 cut(s)	183, 199, 283, 1176
BseMII	CTCAG	1 cut(s)	572
BseNI	ACTGG	1 cut(s)	187
BseSI	GKGCMC	1 cut(s)	1561
BseXI	GCAGC	5 cut(s)	604, 823, 1114, 1600, 1622
BseYI	CCCAGC	1 cut(s)	282
Bsh1236I	CGCG	1 cut(s)	868
BshFI	GGCC	2 cut(s)	560, 576
BshNI	GGYRCC	2 cut(s)	173, 224
BsiHKAI	GWGCWC	2 cut(s)	976, 1455
BslFI	GGGAC	1 cut(s)	1549
BslI	CCNNNNNNNGG	4 cut(s)	183, 199, 283, 1176
BsmAI	GTCTC	1 cut(s)	870
BsmBI	CGTCTC	1 cut(s)	870
BsmFI	GGGAC	1 cut(s)	1549
BsmI	GAATGC	3 cut(s)	472, 797, 1399
BsnI	GGCC	2 cut(s)	560, 576
Bsp1286I	GDGCHC	3 cut(s)	976, 1455, 1561
BspACI	CCGC	5 cut(s)	557, 764, 868, 1176, 1542
BspANI	GGCC	2 cut(s)	560, 576
BspCNI	CTCAG	1 cut(s)	573
BspFNI	CGCG	1 cut(s)	868
BspLI	GGNNCC	3 cut(s)	26, 175, 226
BspMAI	CTGCAG	1 cut(s)	594
BspMI	ACCTGC	1 cut(s)	1055
BspPI	GGATC	6 cut(s)	19, 32, 389, 697, 1035, 1552
BspT107I	GGYRCC	2 cut(s)	173, 224
BsrI	ACTGG	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	277
BssSI	CACGAG	1 cut(s)	975
Bst2BI	CACGAG	1 cut(s)	975
Bst2UI	CCWGG	2 cut(s)	278, 934
Bst4CI	ACNGT	6 cut(s)	607, 622, 649, 1271, 1457, 1629
Bst6I	CTCTTC	1 cut(s)	20
BstAPI	GCANNNNNTGC	3 cut(s)	56, 817, 1685
BstBAI	YACGTR	1 cut(s)	469
BstC8I	GCNNGC	4 cut(s)	189, 299, 403, 1091
BstDEI	CTNAG	2 cut(s)	562, 581
BstENI	CCTNNNNNAGG	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	427
BstFNI	CGCG	1 cut(s)	868
BstMAI	GTCTC	1 cut(s)	870
BstNI	CCWGG	2 cut(s)	278, 934
BstNSI	RCATGY	8 cut(s)	191, 214, 573, 676, 1093, 1165, 1368, 1542
BstSCI	CCNGG	2 cut(s)	276, 932
BstSFI	CTRYAG	2 cut(s)	534, 590
BstSLI	GKGCMC	1 cut(s)	1561
BstUI	CGCG	1 cut(s)	868
BstV1I	GCAGC	5 cut(s)	604, 823, 1114, 1600, 1622
BstX2I	RGATCY	1 cut(s)	24
BstYI	RGATCY	1 cut(s)	24
Bsu36I	CCTNAGG	1 cut(s)	562
BsuI	GTATCC	2 cut(s)	458, 730
BsuRI	GGCC	2 cut(s)	560, 576
BtgZI	GCGATG	1 cut(s)	1203
BtsCI	GGATG	1 cut(s)	427
BtsI	GCAGTG	2 cut(s)	354, 1559
BtsIMutI	CAGTG	5 cut(s)	354, 645, 1244, 1453, 1559
BveI	ACCTGC	1 cut(s)	1055
Cac8I	GCNNGC	4 cut(s)	189, 299, 403, 1091
Csp6I	GTAC	4 cut(s)	225, 241, 1165, 1405
CviQI	GTAC	4 cut(s)	225, 241, 1165, 1405
DdeI	CTNAG	2 cut(s)	562, 581
DraIII	CACNNNGTG	1 cut(s)	56
EaeI	YGGCCR	1 cut(s)	574
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco57I	CTGAAG	7 cut(s)	114, 252, 277, 494, 546, 680, 1385
Eco81I	CCTNAGG	1 cut(s)	562
EcoNI	CCTNNNNNAGG	1 cut(s)	197
EcoRI	GAATTC	4 cut(s)	448, 751, 937, 1240
EcoRII	CCWGG	2 cut(s)	276, 932
EcoT22I	ATGCAT	1 cut(s)	822
Esp3I	CGTCTC	1 cut(s)	870
FaqI	GGGAC	1 cut(s)	1549
FauI	CCCGC	1 cut(s)	1169
FbaI	TGATCA	2 cut(s)	363, 1419
Fnu4HI	GCNGC	7 cut(s)	558, 593, 765, 812, 1128, 1611, 1614
FokI	GGATG	1 cut(s)	414
Fsp4HI	GCNGC	7 cut(s)	558, 593, 765, 812, 1128, 1611, 1614
FspBI	CTAG	1 cut(s)	629
GluI	GCNGC	7 cut(s)	558, 593, 765, 812, 1128, 1611, 1614
GsaI	CCCAGC	1 cut(s)	286
HaeIII	GGCC	2 cut(s)	560, 576
HincII	GTYRAC	1 cut(s)	552
HindII	GTYRAC	1 cut(s)	552
HindIII	AAGCTT	2 cut(s)	784, 981
HinfI	GANTC	4 cut(s)	134, 539, 1412, 1468
HpaI	GTTAAC	1 cut(s)	552
HphI	GGTGA	3 cut(s)	1243, 1633, 1649
Hpy166II	GTNNAC	4 cut(s)	552, 610, 961, 1370
Hpy188I	TCNGA	6 cut(s)	133, 255, 263, 363, 526, 1795
Hpy188III	TCNNGA	7 cut(s)	19, 379, 462, 698, 1217, 1390, 1448
Hpy8I	GTNNAC	4 cut(s)	552, 610, 961, 1370
HpyAV	CCTTC	3 cut(s)	1287, 1628, 1720
HpyCH4III	ACNGT	6 cut(s)	607, 622, 649, 1271, 1457, 1629
HpyCH4IV	ACGT	4 cut(s)	468, 879, 1037, 1082
HpyF3I	CTNAG	2 cut(s)	562, 581
HpySE526I	ACGT	4 cut(s)	468, 879, 1037, 1082
KpnI	GGTACC	1 cut(s)	228
Ksp22I	TGATCA	2 cut(s)	363, 1419
KspAI	GTTAAC	1 cut(s)	552
LmnI	GCTCC	2 cut(s)	341, 1296
Lsp1109I	GCAGC	5 cut(s)	604, 823, 1114, 1600, 1622
LweI	GCATC	7 cut(s)	212, 388, 807, 877, 1139, 1180, 1278
MaeI	CTAG	1 cut(s)	629
MaeII	ACGT	4 cut(s)	468, 879, 1037, 1082
MaeIII	GTNAC	2 cut(s)	1231, 1657
MfeI	CAATTG	1 cut(s)	1134
MflI	RGATCY	1 cut(s)	24
MhlI	GDGCHC	3 cut(s)	976, 1455, 1561
MlsI	TGGCCA	1 cut(s)	576
MluNI	TGGCCA	1 cut(s)	576
MlyI	GAGTC	1 cut(s)	128
MmeI	TCCRAC	2 cut(s)	1546, 1742
Mox20I	TGGCCA	1 cut(s)	576
Mph1103I	ATGCAT	1 cut(s)	822
MscI	TGGCCA	1 cut(s)	576
MseI	TTAA	6 cut(s)	551, 717, 894, 1052, 1079, 1350
MslI	CAYNNNNRTG	1 cut(s)	432
Msp20I	TGGCCA	1 cut(s)	576
MspA1I	CMGCKG	3 cut(s)	514, 557, 1613
MspR9I	CCNGG	2 cut(s)	278, 934
MunI	CAATTG	1 cut(s)	1134
Mva1269I	GAATGC	3 cut(s)	472, 797, 1399
MvaI	CCWGG	2 cut(s)	278, 934
MvnI	CGCG	1 cut(s)	868
NlaIV	GGNNCC	3 cut(s)	26, 175, 226
NmuCI	GTSAC	1 cut(s)	1231
NsiI	ATGCAT	1 cut(s)	822
NspI	RCATGY	8 cut(s)	191, 214, 573, 676, 1093, 1165, 1368, 1542
PaeI	GCATGC	2 cut(s)	191, 1093
PciI	ACATGT	2 cut(s)	672, 1161
PcsI	WCGNNNNNNNCGW	1 cut(s)	1079
PctI	GAATGC	3 cut(s)	472, 797, 1399
PfeI	GAWTC	3 cut(s)	539, 1412, 1468
PfoI	TCCNGGA	1 cut(s)	932
PkrI	GCNGC	7 cut(s)	559, 594, 766, 813, 1129, 1612, 1615
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
Ppu21I	YACGTR	1 cut(s)	469
PscI	ACATGT	2 cut(s)	672, 1161
Psp6I	CCWGG	2 cut(s)	276, 932
PspFI	CCCAGC	1 cut(s)	282
PspGI	CCWGG	2 cut(s)	276, 932
PspN4I	GGNNCC	3 cut(s)	26, 175, 226
PstI	CTGCAG	1 cut(s)	594
PsuI	RGATCY	1 cut(s)	24
PvuII	CAGCTG	2 cut(s)	514, 1613
RsaI	GTAC	4 cut(s)	226, 242, 1166, 1406
RsaNI	GTAC	4 cut(s)	225, 241, 1165, 1405
RseI	CAYNNNNRTG	1 cut(s)	432
SaqAI	TTAA	6 cut(s)	551, 717, 894, 1052, 1079, 1350
SatI	GCNGC	7 cut(s)	558, 593, 765, 812, 1128, 1611, 1614
ScaI	AGTACT	1 cut(s)	1406
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	2 cut(s)	278, 934
SduI	GDGCHC	3 cut(s)	976, 1455, 1561
SfaNI	GCATC	7 cut(s)	212, 388, 807, 877, 1139, 1180, 1278
SfcI	CTRYAG	2 cut(s)	534, 590
SmiMI	CAYNNNNRTG	1 cut(s)	432
SmlI	CTYRAG	1 cut(s)	1448
SmoI	CTYRAG	1 cut(s)	1448
SphI	GCATGC	2 cut(s)	191, 1093
SsiI	CCGC	5 cut(s)	557, 764, 868, 1176, 1542
SspMI	CTAG	1 cut(s)	629
StyD4I	CCNGG	2 cut(s)	276, 932
TaaI	ACNGT	6 cut(s)	607, 622, 649, 1271, 1457, 1629
TaiI	ACGT	4 cut(s)	471, 882, 1040, 1085
TaqI	TCGA	4 cut(s)	941, 970, 1299, 1389
TatI	WGTACW	2 cut(s)	1164, 1404
TauI	GCSGC	2 cut(s)	560, 767
TfiI	GAWTC	3 cut(s)	539, 1412, 1468
Tru1I	TTAA	6 cut(s)	551, 717, 894, 1052, 1079, 1350
Tru9I	TTAA	6 cut(s)	551, 717, 894, 1052, 1079, 1350
TscAI	CASTG	5 cut(s)	361, 652, 1251, 1460, 1566
TseFI	GTSAC	1 cut(s)	1231
TseI	GCWGC	5 cut(s)	592, 811, 1127, 1610, 1613
Tsp45I	GTSAC	1 cut(s)	1231
TspDTI	ATGAA	7 cut(s)	296, 531, 861, 915, 1322, 1659, 1739
TspGWI	ACGGA	2 cut(s)	476, 745
TspRI	CASTG	5 cut(s)	361, 652, 1251, 1460, 1566
XagI	CCTNNNNNAGG	1 cut(s)	197
XceI	RCATGY	8 cut(s)	191, 214, 573, 676, 1093, 1165, 1368, 1542
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1529
XspI	CTAG	1 cut(s)	629
ZrmI	AGTACT	1 cut(s)	1406
Zsp2I	ATGCAT	1 cut(s)	822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.