Rh7BG205700

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0017164
Physical Location & Seq
Forward (+)
17223780 .. 17225485
1706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG205700.1

Sequence Viewer

Length: 1446 bp
ATGTCACAACAATTCCTCAAGTTGAAACTTCAGACTCATGGTCAAGTATCATTTTTGACCTTGCCCAATGTGGCACCAGAACTGGGCATGCCTTATTTGAGGCCTCTCACATGCTCAGCTCTGTTTCGTAAAGCGTTGAGTTTGTTTCTTCAGCTGGAAAGGTCTGAAGTTTCTGCAGACTCATATTCGTTAACAGCGGCTTTAGGTGCATGTGGCCAACTGAGCTTTCTGCAGCTTGGCAAGTCAGTTCACTCAAAGACTGTGAAACTAGGTTTGGAAAATAGCACTGTTGTTTTGAATTGTTTGATTGACATGTATGGGAAATGTGGATCACTTCAGGAGGCAATCCTTGTGTTCAATAACATGATAGAAAAGGATACTATTTCGTGGAATTCCGTAATAGCGGCAAGTGCAAGAAATGGAAGCTTACAACAAGCATTCAGTTTTTTGCAGCAGATGCATAACCCTGATATAATCTCATACAATGAACTGATAAATGGCTTTTCGCGGTTTGGAGACGTAGAAGATGCTATTAAACTTCTATTCAGTATGCCAAATCCAAATTCATCTTCCTGGAATTCGATAATTACAGGATATGTAAACAGGGGTCGAGCACGAGAAGCTTTGGATTTCTTCTGCAAAATGCACTTGGAAAATGTAGAAATGGATCAATTCACGTTTTCAAGCATTTTAAGTGGAGTTGCAGGTATTTCGGCTTTAACATGGGGCATGCTAATCCATTGTTGCACCATAAAATTTGGTTTGGCTACATCAATTGTGGTTGGTAGTTCTTTGATTGACATGTACTCCAAATGCGGGAAGGTAAGCGATGCTGAAACAATCTTCCATTTACTTCCAGAGAAGAATTTGGTCACATGGAATTCAATGATCTCTGGCTTTTCTTGGAACAGTAATCCTTCAAAGATGATGCTCCTTTTCGAACAGATGAAAATGGAGAGAGATGTCAAGCCTGATGAGATCACATTCCTTAATGTTATATCTGCATGTTTACATAATCAAATTCCATTCGAGAATGCACTTCAGTACTTTGAATCAATGATCAAGGATTATGGGATTGAGCCGACTCTTGAGCACTGTTGTTCTATGATTCGGCTAATGGGGCAGAGAGGGGAGGTGTGGAGAGCAGAGAAGATGATATTCCAGCTCGGTTTTGGGGCATGCGGATCAGTTTGGAGGGCACTGCTCGGTGCTTGTGGAGAGTGTAGAGATTTGAAAGTTGCCAAAAATGCAGCTGCAAAGGTGATACAGTTAGAAGGTGATGATGAATTTGTTTATGTTACGATGTCTAACTTGTATGCACACTATGCAAAGTGGGAAGATGTGAGGGTAGCGAGGAAGCTGATGAAGGAGAAAGGAATGAGAAAGGAAGCTGGTTATAGTTGGATTGAAATGGAAAATGTTATCTCAAATTCTGAATTACAATAA

Protein Analysis

481

Amino Acids

53.89

Weight (kDa)

6.18

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 154 - 184 2.3e-06 PPR repeat
PPR_2 PF13041 187 - 235 4.1e-12 PPR repeat family
PPR PF01535 191 - 219 4.6e-06 PPR repeat
PPR_2 PF13041 289 - 337 8.9e-09 PPR repeat family
PPR PF01535 291 - 318 3.5e-06 PPR repeat
E_motif PF20431 410 - 470 2.7e-13 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47460
fragaria_vesca FvH4_5g19050
rosa_chinensis RchiOBHm_Chr7g0203501
rosa_laevigata RLG00000003525
rosa_multiflora Rmu_sc0011994.1_g000002 Rmu_sc0028006.1_g000002
rosa_roxburghii Rroxscaffold_3G00253770
rosa_rugosa Rorug07G0076300
rosa_samantha Rh7AG205800 Rh7BG205700 Rh7CG218500 Rh7DG213000
rosa_wichuraiana Rw7G017980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 695
AccB1I GGYRCC 1 cut(s) 73
AccII CGCG 1 cut(s) 508
AciI CCGC 5 cut(s) 197, 404, 508, 816, 1182
AclWI GGATC 3 cut(s) 337, 675, 1192
AcoI YGGCCR 1 cut(s) 214
AcsI RAATTY 9 cut(s) 391, 562, 577, 755, 865, 880, 1020, 1286, 1429
AcuI CTGAAG 5 cut(s) 14, 134, 186, 320, 1025
AfaI GTAC 2 cut(s) 806, 1046
AfiI CCNNNNNNNGG 2 cut(s) 83, 816
AflIII ACRYGT 2 cut(s) 312, 801
AgsI TTSAA 9 cut(s) 25, 298, 358, 684, 885, 921, 1052, 1234, 1409
AhdI GACNNNNNGTC 1 cut(s) 39
AjnI CCWGG 1 cut(s) 572
AjuI GAANNNNNNNTTGG 8 cut(s) 210, 242, 257, 289, 547, 553, 579, 585
Alw21I GWGCWC 2 cut(s) 616, 1095
Alw26I GTCTC 1 cut(s) 510
AlwI GGATC 3 cut(s) 337, 675, 1192
AoxI GGCC 2 cut(s) 101, 214
ApeKI GCWGC 4 cut(s) 232, 451, 1250, 1253
ApoI RAATTY 9 cut(s) 391, 562, 577, 755, 865, 880, 1020, 1286, 1429
AsuHPI GGTGA 2 cut(s) 1273, 1289
AsuII TTCGAA 1 cut(s) 939
BaeGI GKGCMC 1 cut(s) 1201
BalI TGGCCA 1 cut(s) 216
BanI GGYRCC 1 cut(s) 73
BauI CACGAG 1 cut(s) 615
Bbv12I GWGCWC 2 cut(s) 616, 1095
BbvI GCAGC 4 cut(s) 244, 463, 1240, 1262
BcgI CGANNNNNNTGC 2 cut(s) 693, 727
BciT130I CCWGG 1 cut(s) 574
BciVI GTATCC 1 cut(s) 370
BclI TGATCA 1 cut(s) 1059
BcoDI GTCTC 1 cut(s) 510
BfaI CTAG 1 cut(s) 269
BfmI CTRYAG 2 cut(s) 174, 230
BfuAI ACCTGC 1 cut(s) 695
BfuI GTATCC 1 cut(s) 370
BisI GCNGC 6 cut(s) 198, 233, 405, 452, 1251, 1254
BlpI GCTNAGC 1 cut(s) 115
BlsI GCNGC 6 cut(s) 199, 234, 406, 453, 1252, 1255
BmcAI AGTACT 1 cut(s) 1046
Bme1390I CCNGG 1 cut(s) 574
BmeRI GACNNNNNGTC 1 cut(s) 39
BmiI GGNNCC 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 574
BmrI ACTGGG 1 cut(s) 92
BmsI GCATC 4 cut(s) 447, 517, 820, 918
BmuI ACTGGG 1 cut(s) 92
Bpu1102I GCTNAGC 1 cut(s) 115
Bpu14I TTCGAA 1 cut(s) 939
BpuEI CTTGAG 1 cut(s) 1109
BsaXI ACNNNNNCTCC 2 cut(s) 791, 821
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 816
Bse1I ACTGG 1 cut(s) 87
BseBI CCWGG 1 cut(s) 574
BseLI CCNNNNNNNGG 2 cut(s) 83, 816
BseMII CTCAG 2 cut(s) 129, 212
BseNI ACTGG 1 cut(s) 87
BseSI GKGCMC 1 cut(s) 1201
BseXI GCAGC 4 cut(s) 244, 463, 1240, 1262
Bsh1236I CGCG 1 cut(s) 508
BshFI GGCC 2 cut(s) 103, 216
BshNI GGYRCC 1 cut(s) 73
BsiHKAI GWGCWC 2 cut(s) 616, 1095
BslI CCNNNNNNNGG 2 cut(s) 83, 816
BsmAI GTCTC 1 cut(s) 510
BsmBI CGTCTC 1 cut(s) 510
BsmI GAATGC 2 cut(s) 437, 1039
BsnI GGCC 2 cut(s) 103, 216
Bsp119I TTCGAA 1 cut(s) 939
Bsp1286I GDGCHC 3 cut(s) 616, 1095, 1201
Bsp143I GATC 6 cut(s) 329, 667, 888, 978, 1059, 1184
Bsp1720I GCTNAGC 1 cut(s) 115
BspACI CCGC 5 cut(s) 197, 404, 508, 816, 1182
BspANI GGCC 2 cut(s) 103, 216
BspCNI CTCAG 2 cut(s) 128, 213
BspFNI CGCG 1 cut(s) 508
BspLI GGNNCC 1 cut(s) 75
BspMAI CTGCAG 2 cut(s) 178, 234
BspMI ACCTGC 1 cut(s) 695
BspPI GGATC 3 cut(s) 337, 675, 1192
BspT104I TTCGAA 1 cut(s) 939
BspT107I GGYRCC 1 cut(s) 73
BsrI ACTGG 1 cut(s) 87
BssMI GATC 6 cut(s) 329, 667, 888, 978, 1059, 1184
BssSI CACGAG 1 cut(s) 615
Bst2BI CACGAG 1 cut(s) 615
Bst2UI CCWGG 1 cut(s) 574
Bst4CI ACNGT 5 cut(s) 262, 289, 911, 1097, 1269
BstAPI GCANNNNNTGC 2 cut(s) 457, 1325
BstBI TTCGAA 1 cut(s) 939
BstC8I GCNNGC 3 cut(s) 89, 731, 1180
BstDEI CTNAG 2 cut(s) 115, 221
BstFNI CGCG 1 cut(s) 508
BstKTI GATC 6 cut(s) 332, 670, 891, 981, 1062, 1187
BstMAI GTCTC 1 cut(s) 510
BstMBI GATC 6 cut(s) 329, 667, 888, 978, 1059, 1184
BstMWI GCNNNNNNNGC 8 cut(s) 206, 222, 410, 457, 620, 1120, 1247, 1325
BstNI CCWGG 1 cut(s) 574
BstNSI RCATGY 8 cut(s) 91, 114, 213, 316, 733, 805, 1008, 1182
BstSCI CCNGG 1 cut(s) 572
BstSFI CTRYAG 2 cut(s) 174, 230
BstSLI GKGCMC 1 cut(s) 1201
BstUI CGCG 1 cut(s) 508
BstV1I GCAGC 4 cut(s) 244, 463, 1240, 1262
BsuI GTATCC 1 cut(s) 370
BsuRI GGCC 2 cut(s) 103, 216
BtgZI GCGATG 1 cut(s) 843
BtsI GCAGTG 1 cut(s) 1199
BtsIMutI CAGTG 3 cut(s) 285, 1093, 1199
BveI ACCTGC 1 cut(s) 695
Cac8I GCNNGC 3 cut(s) 89, 731, 1180
Csp6I GTAC 2 cut(s) 805, 1045
CviQI GTAC 2 cut(s) 805, 1045
DdeI CTNAG 2 cut(s) 115, 221
DpnI GATC 6 cut(s) 331, 669, 890, 980, 1061, 1186
DpnII GATC 6 cut(s) 329, 667, 888, 978, 1059, 1184
DriI GACNNNNNGTC 1 cut(s) 39
EaeI YGGCCR 1 cut(s) 214
Eam1105I GACNNNNNGTC 1 cut(s) 39
Eco147I AGGCCT 1 cut(s) 103
Eco57I CTGAAG 5 cut(s) 14, 134, 186, 320, 1025
EcoRI GAATTC 3 cut(s) 391, 577, 880
EcoRII CCWGG 1 cut(s) 572
EcoT22I ATGCAT 1 cut(s) 462
Esp3I CGTCTC 1 cut(s) 510
FauI CCCGC 1 cut(s) 809
FbaI TGATCA 1 cut(s) 1059
Fnu4HI GCNGC 6 cut(s) 198, 233, 405, 452, 1251, 1254
Fsp4HI GCNGC 6 cut(s) 198, 233, 405, 452, 1251, 1254
FspBI CTAG 1 cut(s) 269
GluI GCNGC 6 cut(s) 198, 233, 405, 452, 1251, 1254
HaeIII GGCC 2 cut(s) 103, 216
HincII GTYRAC 1 cut(s) 192
HindII GTYRAC 1 cut(s) 192
HindIII AAGCTT 2 cut(s) 424, 621
HinfI GANTC 5 cut(s) 34, 179, 1052, 1084, 1108
HpaI GTTAAC 1 cut(s) 192
HphI GGTGA 2 cut(s) 1273, 1289
Hpy166II GTNNAC 4 cut(s) 192, 250, 601, 1010
Hpy188I TCNGA 3 cut(s) 33, 166, 1435
Hpy188III TCNNGA 4 cut(s) 338, 857, 1030, 1088
Hpy8I GTNNAC 4 cut(s) 192, 250, 601, 1010
HpyAV CCTTC 4 cut(s) 814, 927, 1268, 1360
HpyCH4III ACNGT 5 cut(s) 262, 289, 911, 1097, 1269
HpyCH4IV ACGT 2 cut(s) 519, 677
HpyF10VI GCNNNNNNNGC 8 cut(s) 206, 222, 410, 457, 620, 1120, 1247, 1325
HpyF3I CTNAG 2 cut(s) 115, 221
HpySE526I ACGT 2 cut(s) 519, 677
Ksp22I TGATCA 1 cut(s) 1059
KspAI GTTAAC 1 cut(s) 192
Kzo9I GATC 6 cut(s) 329, 667, 888, 978, 1059, 1184
LmnI GCTCC 1 cut(s) 936
Lsp1109I GCAGC 4 cut(s) 244, 463, 1240, 1262
LweI GCATC 4 cut(s) 447, 517, 820, 918
MaeI CTAG 1 cut(s) 269
MaeII ACGT 2 cut(s) 519, 677
MaeIII GTNAC 3 cut(s) 3, 871, 1297
MalI GATC 6 cut(s) 331, 669, 890, 980, 1061, 1186
MboI GATC 6 cut(s) 329, 667, 888, 978, 1059, 1184
MboII GAAGA 8 cut(s) 140, 536, 561, 625, 835, 874, 1162, 1349
MfeI CAATTG 1 cut(s) 774
MhlI GDGCHC 3 cut(s) 616, 1095, 1201
MlsI TGGCCA 1 cut(s) 216
MluNI TGGCCA 1 cut(s) 216
MlyI GAGTC 3 cut(s) 28, 173, 1078
MmeI TCCRAC 1 cut(s) 1382
MnlI CCTC 9 cut(s) 26, 93, 114, 334, 1121, 1126, 1188, 1338, 1347
Mox20I TGGCCA 1 cut(s) 216
Mph1103I ATGCAT 1 cut(s) 462
MscI TGGCCA 1 cut(s) 216
MseI TTAA 5 cut(s) 191, 534, 692, 719, 990
Msp20I TGGCCA 1 cut(s) 216
MspA1I CMGCKG 3 cut(s) 154, 197, 1253
MspR9I CCNGG 1 cut(s) 574
MunI CAATTG 1 cut(s) 774
Mva1269I GAATGC 2 cut(s) 437, 1039
MvaI CCWGG 1 cut(s) 574
MvnI CGCG 1 cut(s) 508
MwoI GCNNNNNNNGC 8 cut(s) 206, 222, 410, 457, 620, 1120, 1247, 1325
NdeII GATC 6 cut(s) 329, 667, 888, 978, 1059, 1184
NlaIV GGNNCC 1 cut(s) 75
NmuCI GTSAC 2 cut(s) 3, 871
NsiI ATGCAT 1 cut(s) 462
NspI RCATGY 8 cut(s) 91, 114, 213, 316, 733, 805, 1008, 1182
NspV TTCGAA 1 cut(s) 939
PaeI GCATGC 3 cut(s) 91, 733, 1182
PceI AGGCCT 1 cut(s) 103
PciI ACATGT 2 cut(s) 312, 801
PctI GAATGC 2 cut(s) 437, 1039
PfeI GAWTC 2 cut(s) 1052, 1108
PfoI TCCNGGA 1 cut(s) 572
PkrI GCNGC 6 cut(s) 199, 234, 406, 453, 1252, 1255
PleI GAGTC 3 cut(s) 28, 173, 1078
PpsI GAGTC 3 cut(s) 28, 173, 1078
PscI ACATGT 2 cut(s) 312, 801
Psp6I CCWGG 1 cut(s) 572
PspGI CCWGG 1 cut(s) 572
PspN4I GGNNCC 1 cut(s) 75
PstI CTGCAG 2 cut(s) 178, 234
PvuII CAGCTG 2 cut(s) 154, 1253
RsaI GTAC 2 cut(s) 806, 1046
RsaNI GTAC 2 cut(s) 805, 1045
SaqAI TTAA 5 cut(s) 191, 534, 692, 719, 990
SatI GCNGC 6 cut(s) 198, 233, 405, 452, 1251, 1254
Sau3AI GATC 6 cut(s) 329, 667, 888, 978, 1059, 1184
ScaI AGTACT 1 cut(s) 1046
SchI GAGTC 3 cut(s) 28, 173, 1078
ScrFI CCNGG 1 cut(s) 574
SduI GDGCHC 3 cut(s) 616, 1095, 1201
SfaNI GCATC 4 cut(s) 447, 517, 820, 918
SfcI CTRYAG 2 cut(s) 174, 230
SfuI TTCGAA 1 cut(s) 939
SmlI CTYRAG 2 cut(s) 17, 1088
SmoI CTYRAG 2 cut(s) 17, 1088
SphI GCATGC 3 cut(s) 91, 733, 1182
SseBI AGGCCT 1 cut(s) 103
SsiI CCGC 5 cut(s) 197, 404, 508, 816, 1182
SspMI CTAG 1 cut(s) 269
StuI AGGCCT 1 cut(s) 103
StyD4I CCNGG 1 cut(s) 572
TaaI ACNGT 5 cut(s) 262, 289, 911, 1097, 1269
TaiI ACGT 2 cut(s) 522, 680
TaqI TCGA 4 cut(s) 581, 610, 939, 1029
TatI WGTACW 2 cut(s) 804, 1044
TauI GCSGC 2 cut(s) 200, 407
TfiI GAWTC 2 cut(s) 1052, 1108
Tru1I TTAA 5 cut(s) 191, 534, 692, 719, 990
Tru9I TTAA 5 cut(s) 191, 534, 692, 719, 990
TscAI CASTG 3 cut(s) 292, 1100, 1206
TseFI GTSAC 2 cut(s) 3, 871
TseI GCWGC 4 cut(s) 232, 451, 1250, 1253
Tsp45I GTSAC 2 cut(s) 3, 871
TspDTI ATGAA 5 cut(s) 501, 555, 962, 1299, 1379
TspGWI ACGGA 1 cut(s) 385
TspRI CASTG 3 cut(s) 292, 1100, 1206
XapI RAATTY 9 cut(s) 391, 562, 577, 755, 865, 880, 1020, 1286, 1429
XceI RCATGY 8 cut(s) 91, 114, 213, 316, 733, 805, 1008, 1182
XcmI CCANNNNNNNNNTGG 1 cut(s) 1169
XspI CTAG 1 cut(s) 269
ZrmI AGTACT 1 cut(s) 1046
Zsp2I ATGCAT 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.