FvH4_5g20200

glycerol-3-phosphate transporter

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
11920584 .. 11924778
4195 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g20200.t1

Sequence Viewer

Length: 1623 bp
ATGGCTAGTAATTTTGATACAGTGAGAGGAACCCCACCTGGGATTTTGTTGATTAGAAGCGTTAGAGGAAAAGATTGGAGGTTTTCTACATATAGATATGTGGTTTTGTTTCTTACATTTGTAGCTTATGCTAGTTACCATGCTTCAAGAAAACCCAGTAGTATAGTTAAGAGTGTTTTGTATCCTGAACCCACCAATAAGGACAATGGCTTGGTCCTCCCCTGGCTTGGCCAGGTGTTTGTTAAGACAAATTATATGGGGAATGCGAGTCATCATCGTCATAGGTTGATAGACAAGGGCTGGGCTCCTTTTAATAGCAAGGACGGGACGACGAAGCTAGGTGAGATTGATGTTGCATTTCTAGCATGTTACTCTCTAGGAATGTATGTTGCTGGGCATTTGGGCGATACGCTGGACCTTCGGCTGTTCTTGACATGCGGGATGGTTGGGAGTGGTGTTTTCGTTGCGCTATTTGGGATGGGGTACTTTTGGAACATTCATGTGTTTGGATTCTATCTTGGAATGCAAATGGTTGCAGGGTTGTTCCAAGCAACAGGTTGGCCTTCTGTTGTTGCGGTGATTGGGAATTGGTTTGGAAAGGGGAAGAGGGGTTTGATAATGGGGATATGGAATGCACATACTTCAGTTGGGAATATTAGTGGCTCGCTGCTTGCTGCTGGCGTTCTGGACTATGGTTGGGGTTGGTGTTTTATAGTTCCTGGTGCGTTTATTGCATTGGCAGGAATACTAGTTTTCTTGTTCTTGCCTGCATATCCTGAGGATATTGGATTTTCTAGTCCACACGGTTCAGCTTCAAGTTTGGAGGCAGTTCCTGCTGATGAAGAAGCAAATATGGGAAAAGGAATTCAGGTGGAAAGTGAAACAAATATGTCAAGAGCTGGGTCTGTGACAAGGACAGGTGTTGGTCTTATTGAAGCTTGTGCCATACCAGGAGTTATACCCTTTGCGTTATGCCTCTTCTTTGCAAAGCTTGTAGCCTACACATTTCTGTACTGGCTACCGTTTTATTTAAGTCAGACAGAAATTGGAGGAGAGTATGTTTATGTGAAATCTGCTGGTAATCTCTCTACTTTGTTTGATGTTGGGGGCATAGTTGGTGGAATCCTTGCAGGCTACATATCCGATAAACTTAATGCTCGAGCTACTACAGCAGCCTGCTTCATGTATACTGCAATTCCAGCAATGCTTTTGTATCGCAGATATGGGAGTATTTCACACAATATCAACATTTTGCTTATGATGGTTGCTGGATTGTTTATTAATGGGCCCTATGCACTTATCACTACTGCAGTTTCTGCAGACCTTGGCACACACAGTTCGCTTAGAGGTGACTCTAGAGCACTGGCAACAGTTACTGCCATCATTGATGGTACTGGATCAGTTGGTGCTGCTTTCGGTCCTCTTCTTACTGGTTTCCTTTCAACAATAGGATGGGATGCAGTATTTGTGATGCTAATGGTTTGTGCTCTTATAGCGGGGCTTCTGCTATCACGTTTGGTTATCTCTGAAATTTCAGAGAAGACTTGCAAACCGCCTGTATCCAGTGGGCGACACAATTTTGGAGCTCCTGTGTACCAACCACTTTTAAGTGATCAACGATGA

Protein Analysis

541

Amino Acids

57.98

Weight (kDa)

8.64

Isoelectric Point (pI)

34.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 114 - 443 8.9e-34 Major Facilitator Superfamily
MFS_1 PF07690 358 - 521 2.1e-12 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1187
AciI CCGC 4 cut(s) 438, 575, 1496, 1553
AclWI GGATC 1 cut(s) 1405
AcoI YGGCCR 1 cut(s) 229
AcsI RAATTY 2 cut(s) 864, 1530
AcuI CTGAAG 1 cut(s) 627
AfaI GTAC 4 cut(s) 485, 1013, 1393, 1595
AfiI CCNNNNNNNGG 2 cut(s) 39, 227
AgsI TTSAA 4 cut(s) 147, 816, 935, 1443
AhlI ACTAGT 1 cut(s) 748
AjnI CCWGG 5 cut(s) 37, 221, 231, 718, 949
AluBI AGCT 8 cut(s) 125, 337, 812, 899, 938, 991, 1163, 1586
AluI AGCT 8 cut(s) 125, 337, 812, 899, 938, 991, 1163, 1586
Alw21I GWGCWC 3 cut(s) 1363, 1489, 1588
AlwI GGATC 1 cut(s) 1405
AlwNI CAGNNNCTG 3 cut(s) 833, 1316, 1376
Ama87I CYCGRG 1 cut(s) 1158
AoxI GGCC 3 cut(s) 229, 560, 1286
ApaI GGGCCC 1 cut(s) 1290
ApeKI GCWGC 4 cut(s) 667, 674, 1172, 1409
ApoI RAATTY 2 cut(s) 864, 1530
AseI ATTAAT 1 cut(s) 1281
AspLEI GCGC 1 cut(s) 469
AspS9I GGNCC 5 cut(s) 214, 415, 1286, 1287, 1418
AsuHPI GGTGA 3 cut(s) 353, 589, 1361
AvaI CYCGRG 1 cut(s) 1158
AvaII GGWCC 3 cut(s) 214, 415, 1418
AxyI CCTNAGG 1 cut(s) 777
BaeGI GKGCMC 1 cut(s) 1290
BalI TGGCCA 1 cut(s) 231
BanII GRGCYC 3 cut(s) 307, 1290, 1588
BbsI GAAGAC 1 cut(s) 1547
Bbv12I GWGCWC 3 cut(s) 1363, 1489, 1588
BbvI GCAGC 4 cut(s) 654, 661, 1184, 1396
BccI CCATC 6 cut(s) 436, 472, 1255, 1382, 1388, 1446
BciT130I CCWGG 5 cut(s) 39, 223, 233, 720, 951
BciVI GTATCC 2 cut(s) 192, 1570
BclI TGATCA 1 cut(s) 1612
BcuI ACTAGT 1 cut(s) 748
BfaI CTAG 8 cut(s) 6, 132, 338, 362, 377, 749, 795, 1356
BfmI CTRYAG 3 cut(s) 1167, 1308, 1317
BfuI GTATCC 2 cut(s) 192, 1570
BisI GCNGC 4 cut(s) 668, 675, 1173, 1410
BlsI GCNGC 4 cut(s) 669, 676, 1174, 1411
Bme1390I CCNGG 5 cut(s) 39, 223, 233, 720, 951
Bme18I GGWCC 3 cut(s) 214, 415, 1418
BmeT110I CYCGRG 1 cut(s) 1158
BmgT120I GGNCC 5 cut(s) 214, 415, 1286, 1287, 1418
BmiI GGNNCC 3 cut(s) 31, 306, 1288
BmrFI CCNGG 5 cut(s) 39, 223, 233, 720, 951
BmrI ACTGGG 1 cut(s) 150
BmsI GCATC 2 cut(s) 1447, 1461
BmuI ACTGGG 1 cut(s) 150
BpiI GAAGAC 1 cut(s) 1547
BsaJI CCNNGG 3 cut(s) 38, 221, 1324
BsaXI ACNNNNNCTCC 4 cut(s) 1044, 1074, 1575, 1605
Bsc4I CCNNNNNNNGG 2 cut(s) 39, 227
Bse1I ACTGG 6 cut(s) 156, 1019, 1368, 1399, 1435, 1563
Bse21I CCTNAGG 1 cut(s) 777
Bse3DI GCAATG 1 cut(s) 1209
BseBI CCWGG 5 cut(s) 39, 223, 233, 720, 951
BseDI CCNNGG 3 cut(s) 38, 221, 1324
BseGI GGATG 4 cut(s) 447, 483, 1457, 1462
BseLI CCNNNNNNNGG 2 cut(s) 39, 227
BseMI GCAATG 1 cut(s) 1209
BseMII CTCAG 1 cut(s) 768
BseNI ACTGG 6 cut(s) 156, 1019, 1368, 1399, 1435, 1563
BseRI GAGGAG 1 cut(s) 1065
BseSI GKGCMC 1 cut(s) 1290
BseXI GCAGC 4 cut(s) 654, 661, 1184, 1396
BseYI CCCAGC 3 cut(s) 300, 392, 899
BshFI GGCC 3 cut(s) 231, 562, 1288
BsiHKAI GWGCWC 3 cut(s) 1363, 1489, 1588
BsiHKCI CYCGRG 1 cut(s) 1158
BslFI GGGAC 1 cut(s) 340
BslI CCNNNNNNNGG 2 cut(s) 39, 227
BsmFI GGGAC 1 cut(s) 340
BsmI GAATGC 3 cut(s) 268, 528, 637
BsnI GGCC 3 cut(s) 231, 562, 1288
BsoBI CYCGRG 1 cut(s) 1158
Bsp120I GGGCCC 1 cut(s) 1286
Bsp1286I GDGCHC 5 cut(s) 307, 1290, 1363, 1489, 1588
Bsp143I GATC 2 cut(s) 1397, 1612
BspACI CCGC 4 cut(s) 438, 575, 1496, 1553
BspANI GGCC 3 cut(s) 231, 562, 1288
BspCNI CTCAG 1 cut(s) 769
BspLI GGNNCC 3 cut(s) 31, 306, 1288
BspMAI CTGCAG 2 cut(s) 1312, 1321
BspPI GGATC 1 cut(s) 1405
BsrDI GCAATG 1 cut(s) 1209
BsrI ACTGG 6 cut(s) 156, 1019, 1368, 1399, 1435, 1563
BssECI CCNNGG 3 cut(s) 38, 221, 1324
BssMI GATC 2 cut(s) 1397, 1612
BssNAI GTATAC 1 cut(s) 1188
BssT1I CCWWGG 1 cut(s) 1324
Bst1107I GTATAC 1 cut(s) 1188
Bst2UI CCWGG 5 cut(s) 39, 223, 233, 720, 951
Bst4CI ACNGT 5 cut(s) 22, 806, 1023, 1337, 1372
Bst6I CTCTTC 3 cut(s) 599, 983, 1428
BstAPI GCANNNNNTGC 2 cut(s) 833, 1316
BstC8I GCNNGC 6 cut(s) 665, 672, 679, 768, 1132, 1177
BstDEI CTNAG 2 cut(s) 777, 1343
BstF5I GGATG 4 cut(s) 447, 483, 1457, 1462
BstHHI GCGC 1 cut(s) 469
BstKTI GATC 2 cut(s) 1400, 1615
BstMBI GATC 2 cut(s) 1397, 1612
BstMWI GCNNNNNNNGC 7 cut(s) 362, 731, 833, 1169, 1199, 1316, 1493
BstNI CCWGG 5 cut(s) 39, 223, 233, 720, 951
BstNSI RCATGY 2 cut(s) 369, 438
BstSCI CCNGG 5 cut(s) 37, 221, 231, 718, 949
BstSFI CTRYAG 3 cut(s) 1167, 1308, 1317
BstSLI GKGCMC 1 cut(s) 1290
BstV1I GCAGC 4 cut(s) 654, 661, 1184, 1396
BstV2I GAAGAC 1 cut(s) 1547
BstZ17I GTATAC 1 cut(s) 1188
Bsu36I CCTNAGG 1 cut(s) 777
BsuI GTATCC 2 cut(s) 192, 1570
BsuRI GGCC 3 cut(s) 231, 562, 1288
BtsCI GGATG 4 cut(s) 447, 483, 1457, 1462
BtsIMutI CAGTG 3 cut(s) 27, 1361, 1570
Cac8I GCNNGC 6 cut(s) 665, 672, 679, 768, 1132, 1177
CaiI CAGNNNCTG 3 cut(s) 833, 1316, 1376
CfoI GCGC 1 cut(s) 469
Cfr13I GGNCC 5 cut(s) 214, 415, 1286, 1287, 1418
Csp6I GTAC 4 cut(s) 484, 1012, 1392, 1594
CviAII CATG 5 cut(s) 140, 366, 435, 500, 1183
CviQI GTAC 4 cut(s) 484, 1012, 1392, 1594
DdeI CTNAG 2 cut(s) 777, 1343
DpnI GATC 2 cut(s) 1399, 1614
DpnII GATC 2 cut(s) 1397, 1612
EaeI YGGCCR 1 cut(s) 229
Eam1104I CTCTTC 3 cut(s) 599, 983, 1428
EarI CTCTTC 3 cut(s) 599, 983, 1428
Ecl136II GAGCTC 1 cut(s) 1586
Eco130I CCWWGG 1 cut(s) 1324
Eco24I GRGCYC 3 cut(s) 307, 1290, 1588
Eco47I GGWCC 3 cut(s) 214, 415, 1418
Eco53kI GAGCTC 1 cut(s) 1586
Eco57I CTGAAG 1 cut(s) 627
Eco81I CCTNAGG 1 cut(s) 777
Eco88I CYCGRG 1 cut(s) 1158
EcoICRI GAGCTC 1 cut(s) 1586
EcoO109I RGGNCCY 1 cut(s) 1287
EcoRI GAATTC 1 cut(s) 864
EcoRII CCWGG 5 cut(s) 37, 221, 231, 718, 949
EcoT14I CCWWGG 1 cut(s) 1324
EcoT38I GRGCYC 3 cut(s) 307, 1290, 1588
ErhI CCWWGG 1 cut(s) 1324
FaeI CATG 5 cut(s) 143, 369, 438, 503, 1186
FaqI GGGAC 1 cut(s) 340
FatI CATG 5 cut(s) 139, 365, 434, 499, 1182
FauI CCCGC 2 cut(s) 431, 1489
FbaI TGATCA 1 cut(s) 1612
FblI GTMKAC 1 cut(s) 1187
Fnu4HI GCNGC 4 cut(s) 668, 675, 1173, 1410
FokI GGATG 4 cut(s) 454, 490, 1464, 1469
FriOI GRGCYC 3 cut(s) 307, 1290, 1588
Fsp4HI GCNGC 4 cut(s) 668, 675, 1173, 1410
FspBI CTAG 8 cut(s) 6, 132, 338, 362, 377, 749, 795, 1356
GlaI GCGC 1 cut(s) 468
GluI GCNGC 4 cut(s) 668, 675, 1173, 1410
GsaI CCCAGC 3 cut(s) 304, 396, 903
HaeIII GGCC 3 cut(s) 231, 562, 1288
HhaI GCGC 1 cut(s) 469
Hin1II CATG 5 cut(s) 143, 369, 438, 503, 1186
Hin6I GCGC 1 cut(s) 467
HinP1I GCGC 1 cut(s) 467
HindIII AAGCTT 2 cut(s) 936, 989
HinfI GANTC 4 cut(s) 268, 510, 1122, 1352
HphI GGTGA 3 cut(s) 353, 589, 1361
Hpy166II GTNNAC 3 cut(s) 800, 1188, 1594
Hpy188I TCNGA 4 cut(s) 1038, 1144, 1528, 1537
Hpy188III TCNNGA 7 cut(s) 147, 185, 430, 686, 776, 894, 1356
Hpy8I GTNNAC 3 cut(s) 800, 1188, 1594
Hpy99I CGWCG 1 cut(s) 334
HpyAV CCTTC 2 cut(s) 428, 573
HpyCH4III ACNGT 5 cut(s) 22, 806, 1023, 1337, 1372
HpyCH4IV ACGT 1 cut(s) 1513
HpyF10VI GCNNNNNNNGC 7 cut(s) 362, 731, 833, 1169, 1199, 1316, 1493
HpyF3I CTNAG 2 cut(s) 777, 1343
HpySE526I ACGT 1 cut(s) 1513
Hsp92II CATG 5 cut(s) 143, 369, 438, 503, 1186
HspAI GCGC 1 cut(s) 467
Ksp22I TGATCA 1 cut(s) 1612
Kzo9I GATC 2 cut(s) 1397, 1612
LmnI GCTCC 3 cut(s) 310, 1583, 1591
Lsp1109I GCAGC 4 cut(s) 654, 661, 1184, 1396
LweI GCATC 2 cut(s) 1447, 1461
MaeI CTAG 8 cut(s) 6, 132, 338, 362, 377, 749, 795, 1356
MaeII ACGT 1 cut(s) 1513
MaeIII GTNAC 5 cut(s) 134, 368, 907, 1349, 1372
MalI GATC 2 cut(s) 1399, 1614
MboI GATC 2 cut(s) 1397, 1612
MboII GAAGA 5 cut(s) 616, 854, 970, 1415, 1552
MhlI GDGCHC 5 cut(s) 307, 1290, 1363, 1489, 1588
MlsI TGGCCA 1 cut(s) 231
MluCI AATT 8 cut(s) 10, 250, 586, 864, 1044, 1194, 1530, 1576
MluNI TGGCCA 1 cut(s) 231
MlyI GAGTC 2 cut(s) 277, 1346
Mox20I TGGCCA 1 cut(s) 231
MscI TGGCCA 1 cut(s) 231
MseI TTAA 7 cut(s) 168, 243, 312, 1031, 1152, 1281, 1607
MslI CAYNNNNRTG 1 cut(s) 500
Msp20I TGGCCA 1 cut(s) 231
MspR9I CCNGG 5 cut(s) 39, 223, 233, 720, 951
Mva1269I GAATGC 3 cut(s) 268, 528, 637
MvaI CCWGG 5 cut(s) 39, 223, 233, 720, 951
MwoI GCNNNNNNNGC 7 cut(s) 362, 731, 833, 1169, 1199, 1316, 1493
NdeII GATC 2 cut(s) 1397, 1612
NlaIII CATG 5 cut(s) 143, 369, 438, 503, 1186
NlaIV GGNNCC 3 cut(s) 31, 306, 1288
NmuCI GTSAC 2 cut(s) 907, 1349
NspI RCATGY 2 cut(s) 369, 438
PaeR7I CTCGAG 1 cut(s) 1158
PctI GAATGC 3 cut(s) 268, 528, 637
PfeI GAWTC 2 cut(s) 510, 1122
PkrI GCNGC 4 cut(s) 669, 676, 1174, 1411
PleI GAGTC 2 cut(s) 276, 1346
PpsI GAGTC 2 cut(s) 276, 1346
PshBI ATTAAT 1 cut(s) 1281
Psp124BI GAGCTC 1 cut(s) 1588
Psp6I CCWGG 5 cut(s) 37, 221, 231, 718, 949
PspFI CCCAGC 3 cut(s) 300, 392, 899
PspGI CCWGG 5 cut(s) 37, 221, 231, 718, 949
PspN4I GGNNCC 3 cut(s) 31, 306, 1288
PspOMI GGGCCC 1 cut(s) 1286
PspPI GGNCC 5 cut(s) 214, 415, 1286, 1287, 1418
PspXI VCTCGAGB 1 cut(s) 1158
PstI CTGCAG 2 cut(s) 1312, 1321
PstNI CAGNNNCTG 3 cut(s) 833, 1316, 1376
RsaI GTAC 4 cut(s) 485, 1013, 1393, 1595
RsaNI GTAC 4 cut(s) 484, 1012, 1392, 1594
RseI CAYNNNNRTG 1 cut(s) 500
SacI GAGCTC 1 cut(s) 1588
SaqAI TTAA 7 cut(s) 168, 243, 312, 1031, 1152, 1281, 1607
SatI GCNGC 4 cut(s) 668, 675, 1173, 1410
Sau3AI GATC 2 cut(s) 1397, 1612
Sau96I GGNCC 5 cut(s) 214, 415, 1286, 1287, 1418
SchI GAGTC 2 cut(s) 277, 1346
ScrFI CCNGG 5 cut(s) 39, 223, 233, 720, 951
SduI GDGCHC 5 cut(s) 307, 1290, 1363, 1489, 1588
SfaNI GCATC 2 cut(s) 1447, 1461
SfcI CTRYAG 3 cut(s) 1167, 1308, 1317
Sfr274I CTCGAG 1 cut(s) 1158
SinI GGWCC 3 cut(s) 214, 415, 1418
SlaI CTCGAG 1 cut(s) 1158
SmiMI CAYNNNNRTG 1 cut(s) 500
SmlI CTYRAG 1 cut(s) 1158
SmoI CTYRAG 1 cut(s) 1158
SpeI ACTAGT 1 cut(s) 748
Sse9I AATT 8 cut(s) 10, 250, 586, 864, 1044, 1194, 1530, 1576
SsiI CCGC 4 cut(s) 438, 575, 1496, 1553
SspI AATATT 1 cut(s) 655
SspMI CTAG 8 cut(s) 6, 132, 338, 362, 377, 749, 795, 1356
SstI GAGCTC 1 cut(s) 1588
StyD4I CCNGG 5 cut(s) 37, 221, 231, 718, 949
StyI CCWWGG 1 cut(s) 1324
TaaI ACNGT 5 cut(s) 22, 806, 1023, 1337, 1372
TaiI ACGT 1 cut(s) 1516
TaqI TCGA 1 cut(s) 1159
TaqII GACCGA 1 cut(s) 1406
TasI AATT 8 cut(s) 10, 250, 586, 864, 1044, 1194, 1530, 1576
TatI WGTACW 1 cut(s) 1011
TfiI GAWTC 2 cut(s) 510, 1122
Tru1I TTAA 7 cut(s) 168, 243, 312, 1031, 1152, 1281, 1607
Tru9I TTAA 7 cut(s) 168, 243, 312, 1031, 1152, 1281, 1607
TscAI CASTG 3 cut(s) 27, 1368, 1570
TseFI GTSAC 2 cut(s) 907, 1349
TseI GCWGC 4 cut(s) 667, 674, 1172, 1409
Tsp45I GTSAC 2 cut(s) 907, 1349
TspDTI ATGAA 3 cut(s) 488, 855, 1171
TspRI CASTG 3 cut(s) 27, 1368, 1570
VpaK11BI GGWCC 3 cut(s) 214, 415, 1418
VspI ATTAAT 1 cut(s) 1281
XapI RAATTY 2 cut(s) 864, 1530
XbaI TCTAGA 1 cut(s) 1355
XceI RCATGY 2 cut(s) 369, 438
XhoI CTCGAG 1 cut(s) 1158
XmiI GTMKAC 1 cut(s) 1187
XspI CTAG 8 cut(s) 6, 132, 338, 362, 377, 749, 795, 1356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.