Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0012115

Physical Location & Seq

Genomic Coordinates Reverse (-)

6045652 .. 6045981

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1051400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGTCTCAGAATTCTGATACAATGCGAGGAATCCCACCTGGGATTTTGCTGATTAGAAGCATTAGAGGCAAAGATTGGAGTCTTTCTACATATAGATATGTAATTTTTCTTGGTACTTTCATAGCTTATACATGTTACCATGCATCTAGAAAAACCAGTGGTATAGTTAAAAGTGTTTTGTATCCTGATCCCCATAGAGGCAATGGCTTGGACCCCTTGTTTGGTAAAGTCTTTGTCAAGAGAGAGTTTGGGGGCAATGAGAATTATAGGTTACACAAGGGTTGGGCCCCCTTTAATGGAACCGACGGGACGTCGAAACTGGGGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0016020 GO:0031090 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048878 GO:0050801 GO:0055062 GO:0055081 GO:0055083 GO:0065007 GO:0065008 GO:0072505 GO:0072506 GO:0098588 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

110

Amino Acids

12.2

Weight (kDa)

9.94

Isoelectric Point (pI)

13.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17550
fragaria_vesca	FvH4_5g20200
malus_domestica	MD04G1051000.v1.1 MD04G1051400.v1.1 MD06G1048800.v1.1
prunus_persica	Prupe.5G059000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0205141
rosa_laevigata	RLG00000003396
rosa_multiflora	Rmu_sc0001072.1_g000004 Rmu_sc0009349.1_g000013
rosa_roxburghii	Rroxscaffold_3G00252550
rosa_rugosa	Rorug07G0088200 Rorug07G0088300 Rorug07G0088400
rosa_samantha	Rh7AG219300 Rh7BG215700 Rh7CG232300 Rh7DG226600
rosa_wichuraiana	Rw7G018970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	314
AclWI	GGATC	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	10
AcyI	GRCGYC	1 cut(s)	311
AfaI	GTAC	1 cut(s)	115
AfiI	CCNNNNNNNGG	3 cut(s)	197, 221, 296
AflIII	ACRYGT	1 cut(s)	131
AhdI	GACNNNNNGTC	1 cut(s)	310
AjnI	CCWGG	1 cut(s)	37
AluBI	AGCT	1 cut(s)	125
AluI	AGCT	1 cut(s)	125
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	182
AoxI	GGCC	1 cut(s)	285
ApaI	GGGCCC	1 cut(s)	289
ApoI	RAATTY	1 cut(s)	10
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
AspS9I	GGNCC	3 cut(s)	211, 285, 286
AvaII	GGWCC	1 cut(s)	211
BaeGI	GKGCMC	1 cut(s)	289
BanII	GRGCYC	1 cut(s)	289
BciT130I	CCWGG	1 cut(s)	39
BciVI	GTATCC	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	147
BfuI	GTATCC	1 cut(s)	192
Bme1390I	CCNGG	1 cut(s)	39
Bme18I	GGWCC	1 cut(s)	211
BmeRI	GACNNNNNGTC	1 cut(s)	310
BmgT120I	GGNCC	3 cut(s)	211, 285, 286
BmiI	GGNNCC	4 cut(s)	213, 287, 288, 301
BmrFI	CCNGG	1 cut(s)	39
BmrI	ACTGGG	1 cut(s)	329
BmsI	GCATC	1 cut(s)	152
BmuI	ACTGGG	1 cut(s)	329
BsaHI	GRCGYC	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	3 cut(s)	197, 221, 296
Bse1I	ACTGG	2 cut(s)	156, 324
Bse3DI	GCAATG	2 cut(s)	208, 262
BseBI	CCWGG	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	38
BseLI	CCNNNNNNNGG	3 cut(s)	197, 221, 296
BseMI	GCAATG	2 cut(s)	208, 262
BseMII	CTCAG	1 cut(s)	20
BseNI	ACTGG	2 cut(s)	156, 324
BseSI	GKGCMC	1 cut(s)	289
BshFI	GGCC	1 cut(s)	287
BslFI	GGGAC	1 cut(s)	322
BslI	CCNNNNNNNGG	3 cut(s)	197, 221, 296
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	322
BsnI	GGCC	1 cut(s)	287
Bsp120I	GGGCCC	1 cut(s)	285
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp143I	GATC	1 cut(s)	187
BspANI	GGCC	1 cut(s)	287
BspCNI	CTCAG	1 cut(s)	19
BspLI	GGNNCC	4 cut(s)	213, 287, 288, 301
BspPI	GGATC	1 cut(s)	182
BsrDI	GCAATG	2 cut(s)	208, 262
BsrI	ACTGG	2 cut(s)	156, 324
BssECI	CCNNGG	1 cut(s)	38
BssMI	GATC	1 cut(s)	187
BssNI	GRCGYC	1 cut(s)	311
Bst2UI	CCWGG	1 cut(s)	39
BstACI	GRCGYC	1 cut(s)	311
BstDEI	CTNAG	1 cut(s)	6
BstKTI	GATC	1 cut(s)	190
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	1 cut(s)	66
BstNI	CCWGG	1 cut(s)	39
BstNSI	RCATGY	1 cut(s)	135
BstSCI	CCNGG	1 cut(s)	37
BstSLI	GKGCMC	1 cut(s)	289
BsuI	GTATCC	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	287
BtsIMutI	CAGTG	1 cut(s)	163
Cfr13I	GGNCC	3 cut(s)	211, 285, 286
Csp6I	GTAC	1 cut(s)	114
CviAII	CATG	2 cut(s)	132, 140
CviJI	RGCY	3 cut(s)	125, 207, 287
CviKI_1	RGCY	3 cut(s)	125, 207, 287
CviQI	GTAC	1 cut(s)	114
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
DriI	GACNNNNNGTC	1 cut(s)	310
Eam1105I	GACNNNNNGTC	1 cut(s)	310
Eco24I	GRGCYC	1 cut(s)	289
Eco47I	GGWCC	1 cut(s)	211
EcoO109I	RGGNCCY	1 cut(s)	286
EcoRI	GAATTC	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	37
EcoT22I	ATGCAT	1 cut(s)	145
EcoT38I	GRGCYC	1 cut(s)	289
FaeI	CATG	2 cut(s)	135, 143
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	2 cut(s)	131, 139
FriOI	GRGCYC	1 cut(s)	289
FspBI	CTAG	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	287
Hin1I	GRCGYC	1 cut(s)	311
Hin1II	CATG	2 cut(s)	135, 143
HinfI	GANTC	2 cut(s)	30, 79
Hpy188I	TCNGA	2 cut(s)	9, 16
Hpy188III	TCNNGA	3 cut(s)	147, 185, 238
Hpy99I	CGWCG	2 cut(s)	308, 316
HpyCH4IV	ACGT	1 cut(s)	311
HpyCH4V	TGCA	1 cut(s)	143
HpyF10VI	GCNNNNNNNGC	1 cut(s)	66
HpyF3I	CTNAG	1 cut(s)	6
HpySE526I	ACGT	1 cut(s)	311
Hsp92I	GRCGYC	1 cut(s)	311
Hsp92II	CATG	2 cut(s)	135, 143
Kzo9I	GATC	1 cut(s)	187
LpnPI	CCDG	5 cut(s)	24, 51, 169, 198, 305
LweI	GCATC	1 cut(s)	152
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	1 cut(s)	311
MaeIII	GTNAC	2 cut(s)	134, 270
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	289
MluCI	AATT	3 cut(s)	10, 102, 262
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	3 cut(s)	20, 59, 191
Mph1103I	ATGCAT	1 cut(s)	145
MseI	TTAA	2 cut(s)	168, 294
MspR9I	CCNGG	1 cut(s)	39
MvaI	CCWGG	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	66
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	2 cut(s)	135, 143
NlaIV	GGNNCC	4 cut(s)	213, 287, 288, 301
NsiI	ATGCAT	1 cut(s)	145
NspI	RCATGY	1 cut(s)	135
PciI	ACATGT	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	30
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
PscI	ACATGT	1 cut(s)	131
Psp6I	CCWGG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	37
PspN4I	GGNNCC	4 cut(s)	213, 287, 288, 301
PspOMI	GGGCCC	1 cut(s)	285
PspPI	GGNCC	3 cut(s)	211, 285, 286
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
SaqAI	TTAA	2 cut(s)	168, 294
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	3 cut(s)	211, 285, 286
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	39
SduI	GDGCHC	1 cut(s)	289
SetI	ASST	4 cut(s)	40, 127, 272, 314
SfaNI	GCATC	1 cut(s)	152
SinI	GGWCC	1 cut(s)	211
Sse9I	AATT	3 cut(s)	10, 102, 262
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	1 cut(s)	37
TaiI	ACGT	1 cut(s)	314
TaqI	TCGA	1 cut(s)	314
TasI	AATT	3 cut(s)	10, 102, 262
TfiI	GAWTC	1 cut(s)	30
Tru1I	TTAA	2 cut(s)	168, 294
Tru9I	TTAA	2 cut(s)	168, 294
TscAI	CASTG	1 cut(s)	163
TspDTI	ATGAA	1 cut(s)	109
TspRI	CASTG	1 cut(s)	163
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	1 cut(s)	10
XbaI	TCTAGA	1 cut(s)	146
XceI	RCATGY	1 cut(s)	135
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200
XspI	CTAG	1 cut(s)	147
ZraI	GACGTC	1 cut(s)	312
Zsp2I	ATGCAT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.