MD04G1051000.v1.1

glycerol-3-phosphate transporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
6019577 .. 6022594
3018 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1051000.v1.1.491

Sequence Viewer

Length: 1308 bp
ATGACGGTTTTGCAAAATTGGAGTCTTTCTACATATAGATATCTAATTTTGCTTGTTACTTTCATAGCTTATACATGTTACCATGCATCTAGAAAACCCAGTAGTGTAGTTAAAAGTGTTTTGTATCCTGATCCCCATAGAGGCAATGGCTTGGACTCCTTGTTTGGTAAAGTCTTTCTCAAGAGAGAGTTTAGGGGCAATGAGAATTGTAGGTTACACAAGGGTTGGGCCCCCTTTAATGGAACCATCGGGATATCGAAATTGGGGGAGATTGATCTTGCGTTTCTTGCATGTTACTCTTTGGGAATGTATGTTGCTGGCCATTTGGGAGATACTTTGGACCTCCGATTGTTCTTGACGACCGGGATGTCTGGGAGTGGCATTTTTGTTGCCTTGTTTGGGATGGGATACTTTTTGAATATTCCTGTGTTTGGTTTCCATCTTGGGATGCAAATGATTGCCGGGTTGTTCCAAGCAACCGGTTGGCCTTCAGTTGTTGCTGTGATTGGTAATTGGTTTGGAAGGGGAAAGAGGGGTTTGATAATGGGCATATGGAATGCGCATACTTCGGTTGGGAATAAAAGTGGTTCACTTCTTGCTGCTAGTGTTCTAGATTATGGGTGGGGTTGGTGCTTTATTGTTCCAGCTTCTAATTTGGAGGCAGTACCTGATGATGAAGAAGTTAATATGAAAAAGGGATTCATGGTCGACGGTAAAATAAAAACTATATCCCGAATTGGGTCTGTGAGTAGGACAAGTATCGGAATTATTGAAGCTTGTATGATACCAGGAGTTATACCCTTTGCGTTGTGCTTCTTCTTGTCAAAGCTTGTGGCCTACACATTTCTGTACTGGCTACCATTTTATCTAACTGAGACAGAAATAGGAGGCAAGTATGTTTCTGTGAAATCTGCTGGAAACCTCTCCACTTTGTTCGATGTAGGAGGCATAGTTGGTGGAATCCTCGCTGGCTACATATATGATAAGCTTAATGCCCGAGCTACCACAGCAGCCGGCTTCATGTCATTTGCAATTCCGGCAATGCTATTATATCGAAAATACGGCAGCATTTCAAACAATGTCAATATTGCGCTTATGATGGTTGCTGGCTTGTTTATTAATGGACCCTATGCACTTATCACCACCGCAGTTTCTGCAAACCTTGGAACGCACAGTTCCCTTAGAGGGAATTCTCGAGCACTGGCAACGGTTACCACCATAATTGATGGTACTGGATCAGTTGGTGCAGCTTTTGGCCCTCTTCTTACTGGTTTCCTTTCAACAAAGGGATGGGATGCGGTATGTTAA

Protein Analysis

436

Amino Acids

46.8

Weight (kDa)

9.25

Isoelectric Point (pI)

24.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 89 - 216 5.5e-18 Major Facilitator Superfamily
MFS_1 PF07690 269 - 433 1.9e-08 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 367
Acc16I TGCGCA 1 cut(s) 561
AccI GTMKAC 1 cut(s) 708
AciI CCGC 2 cut(s) 1146, 1298
AclWI GGATC 2 cut(s) 125, 1243
AcoI YGGCCR 1 cut(s) 319
AcsI RAATTY 1 cut(s) 1189
AcuI CTGAAG 1 cut(s) 474
AfaI GTAC 3 cut(s) 666, 851, 1231
AfiI CCNNNNNNNGG 6 cut(s) 140, 239, 399, 431, 738, 1185
AflIII ACRYGT 1 cut(s) 74
AgeI ACCGGT 1 cut(s) 479
AgsI TTSAA 4 cut(s) 418, 773, 1074, 1281
AjnI CCWGG 1 cut(s) 787
AluBI AGCT 7 cut(s) 68, 647, 776, 829, 988, 1001, 1250
AluI AGCT 7 cut(s) 68, 647, 776, 829, 988, 1001, 1250
Alw21I GWGCWC 1 cut(s) 1201
Alw26I GTCTC 1 cut(s) 869
AlwI GGATC 2 cut(s) 125, 1243
AlwNI CAGNNNCTG 2 cut(s) 668, 1154
Ama87I CYCGRG 2 cut(s) 996, 1194
AoxI GGCC 5 cut(s) 228, 319, 485, 834, 1255
ApaI GGGCCC 1 cut(s) 232
ApeKI GCWGC 4 cut(s) 599, 1010, 1065, 1247
ApoI RAATTY 1 cut(s) 1189
ArsI GACNNNNNNTTYG 4 cut(s) 7, 39, 146, 178
AseI ATTAAT 1 cut(s) 1119
AsiGI ACCGGT 1 cut(s) 479
AspLEI GCGC 2 cut(s) 562, 1093
AspS9I GGNCC 5 cut(s) 228, 229, 340, 1124, 1256
AsuC2I CCSGG 2 cut(s) 364, 463
AsuHPI GGTGA 1 cut(s) 1132
AvaI CYCGRG 2 cut(s) 996, 1194
AvaII GGWCC 2 cut(s) 340, 1124
BaeGI GKGCMC 1 cut(s) 232
BalI TGGCCA 1 cut(s) 321
BanII GRGCYC 1 cut(s) 232
Bbv12I GWGCWC 1 cut(s) 1201
BbvI GCAGC 4 cut(s) 586, 1022, 1077, 1259
BccI CCATC 6 cut(s) 254, 397, 447, 1093, 1220, 1284
BceAI ACGGC 1 cut(s) 1078
BciT130I CCWGG 1 cut(s) 789
BciVI GTATCC 2 cut(s) 135, 401
BcnI CCSGG 2 cut(s) 364, 463
BcoDI GTCTC 1 cut(s) 869
BfaI CTAG 3 cut(s) 90, 603, 611
BfuI GTATCC 2 cut(s) 135, 401
BisI GCNGC 4 cut(s) 600, 1011, 1066, 1248
BlsI GCNGC 4 cut(s) 601, 1012, 1067, 1249
Bme1390I CCNGG 3 cut(s) 364, 463, 789
Bme18I GGWCC 2 cut(s) 340, 1124
BmeT110I CYCGRG 2 cut(s) 996, 1194
BmgT120I GGNCC 5 cut(s) 228, 229, 340, 1124, 1256
BmiI GGNNCC 4 cut(s) 230, 231, 244, 1126
BmrFI CCNGG 3 cut(s) 364, 463, 789
BmrI ACTGGG 1 cut(s) 93
BmsI GCATC 3 cut(s) 95, 438, 1285
BmuI ACTGGG 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 164
BpuMI CCSGG 2 cut(s) 364, 463
BsaJI CCNNGG 1 cut(s) 1162
BsaWI WCCGGW 1 cut(s) 479
BsaXI ACNNNNNCTCC 2 cut(s) 936, 966
Bsc4I CCNNNNNNNGG 6 cut(s) 140, 239, 399, 431, 738, 1185
Bse118I RCCGGY 2 cut(s) 479, 1013
Bse1I ACTGG 5 cut(s) 99, 857, 1206, 1237, 1273
Bse3DI GCAATG 3 cut(s) 151, 205, 1047
BseBI CCWGG 1 cut(s) 789
BseDI CCNNGG 1 cut(s) 1162
BseGI GGATG 5 cut(s) 372, 408, 453, 1295, 1300
BseLI CCNNNNNNNGG 6 cut(s) 140, 239, 399, 431, 738, 1185
BseMI GCAATG 3 cut(s) 151, 205, 1047
BseMII CTCAG 1 cut(s) 864
BseNI ACTGG 5 cut(s) 99, 857, 1206, 1237, 1273
BseSI GKGCMC 1 cut(s) 232
BseXI GCAGC 4 cut(s) 586, 1022, 1077, 1259
BsgI GTGCAG 1 cut(s) 1266
Bsh1285I CGRYCG 1 cut(s) 363
BshFI GGCC 5 cut(s) 230, 321, 487, 836, 1257
BshTI ACCGGT 1 cut(s) 479
BsiEI CGRYCG 1 cut(s) 363
BsiHKAI GWGCWC 1 cut(s) 1201
BsiHKCI CYCGRG 2 cut(s) 996, 1194
BsiSI CCGG 5 cut(s) 363, 462, 480, 1014, 1037
BslI CCNNNNNNNGG 6 cut(s) 140, 239, 399, 431, 738, 1185
BsmAI GTCTC 1 cut(s) 869
BsmI GAATGC 1 cut(s) 562
BsnI GGCC 5 cut(s) 230, 321, 487, 836, 1257
BsoBI CYCGRG 2 cut(s) 996, 1194
Bsp120I GGGCCC 1 cut(s) 228
Bsp1286I GDGCHC 2 cut(s) 232, 1201
Bsp143I GATC 3 cut(s) 130, 274, 1235
BspACI CCGC 2 cut(s) 1146, 1298
BspANI GGCC 5 cut(s) 230, 321, 487, 836, 1257
BspCNI CTCAG 1 cut(s) 865
BspLI GGNNCC 4 cut(s) 230, 231, 244, 1126
BspPI GGATC 2 cut(s) 125, 1243
BsrDI GCAATG 3 cut(s) 151, 205, 1047
BsrFI RCCGGY 2 cut(s) 479, 1013
BsrI ACTGG 5 cut(s) 99, 857, 1206, 1237, 1273
BssAI RCCGGY 2 cut(s) 479, 1013
BssECI CCNNGG 1 cut(s) 1162
BssMI GATC 3 cut(s) 130, 274, 1235
BssT1I CCWWGG 1 cut(s) 1162
Bst2UI CCWGG 1 cut(s) 789
Bst4CI ACNGT 4 cut(s) 7, 713, 1175, 1210
Bst6I CTCTTC 1 cut(s) 1266
BstAPI GCANNNNNTGC 1 cut(s) 1154
BstC8I GCNNGC 4 cut(s) 319, 970, 1015, 1108
BstDEI CTNAG 2 cut(s) 873, 1181
BstEII GGTNACC 1 cut(s) 1210
BstF5I GGATG 5 cut(s) 372, 408, 453, 1295, 1300
BstHHI GCGC 2 cut(s) 562, 1093
BstKTI GATC 3 cut(s) 133, 277, 1238
BstMAI GTCTC 1 cut(s) 869
BstMBI GATC 3 cut(s) 130, 274, 1235
BstMCI CGRYCG 1 cut(s) 363
BstMWI GCNNNNNNNGC 4 cut(s) 287, 1007, 1037, 1154
BstNI CCWGG 1 cut(s) 789
BstNSI RCATGY 2 cut(s) 78, 294
BstPI GGTNACC 1 cut(s) 1210
BstSCI CCNGG 3 cut(s) 362, 461, 787
BstSLI GKGCMC 1 cut(s) 232
BstV1I GCAGC 4 cut(s) 586, 1022, 1077, 1259
BsuI GTATCC 2 cut(s) 135, 401
BsuRI GGCC 5 cut(s) 230, 321, 487, 836, 1257
BtsCI GGATG 5 cut(s) 372, 408, 453, 1295, 1300
BtsIMutI CAGTG 1 cut(s) 1199
Cac8I GCNNGC 4 cut(s) 319, 970, 1015, 1108
CaiI CAGNNNCTG 2 cut(s) 668, 1154
CfoI GCGC 2 cut(s) 562, 1093
Cfr10I RCCGGY 2 cut(s) 479, 1013
Cfr13I GGNCC 5 cut(s) 228, 229, 340, 1124, 1256
Csp6I GTAC 3 cut(s) 665, 850, 1230
CspAI ACCGGT 1 cut(s) 479
CspCI CAANNNNNGTGG 4 cut(s) 813, 848, 1204, 1239
CviAII CATG 5 cut(s) 75, 83, 291, 703, 1021
CviQI GTAC 3 cut(s) 665, 850, 1230
DdeI CTNAG 2 cut(s) 873, 1181
DpnI GATC 3 cut(s) 132, 276, 1237
DpnII GATC 3 cut(s) 130, 274, 1235
DrdI GACNNNNNNGTC 1 cut(s) 367
DseDI GACNNNNNNGTC 1 cut(s) 367
EaeI YGGCCR 1 cut(s) 319
Eam1104I CTCTTC 1 cut(s) 1266
EarI CTCTTC 1 cut(s) 1266
Eco130I CCWWGG 1 cut(s) 1162
Eco24I GRGCYC 1 cut(s) 232
Eco32I GATATC 2 cut(s) 41, 255
Eco47I GGWCC 2 cut(s) 340, 1124
Eco57I CTGAAG 1 cut(s) 474
Eco88I CYCGRG 2 cut(s) 996, 1194
Eco91I GGTNACC 1 cut(s) 1210
EcoO109I RGGNCCY 1 cut(s) 229
EcoO65I GGTNACC 1 cut(s) 1210
EcoRI GAATTC 1 cut(s) 1189
EcoRII CCWGG 1 cut(s) 787
EcoRV GATATC 2 cut(s) 41, 255
EcoT14I CCWWGG 1 cut(s) 1162
EcoT22I ATGCAT 1 cut(s) 88
EcoT38I GRGCYC 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 1162
FaeI CATG 5 cut(s) 78, 86, 294, 706, 1024
FatI CATG 5 cut(s) 74, 82, 290, 702, 1020
FauNDI CATATG 1 cut(s) 551
FblI GTMKAC 1 cut(s) 708
Fnu4HI GCNGC 4 cut(s) 600, 1011, 1066, 1248
FokI GGATG 4 cut(s) 379, 415, 460, 1302
FriOI GRGCYC 1 cut(s) 232
Fsp4HI GCNGC 4 cut(s) 600, 1011, 1066, 1248
FspAI RTGCGCAY 1 cut(s) 561
FspBI CTAG 3 cut(s) 90, 603, 611
FspI TGCGCA 1 cut(s) 561
GlaI GCGC 2 cut(s) 561, 1092
GluI GCNGC 4 cut(s) 600, 1011, 1066, 1248
HaeIII GGCC 5 cut(s) 230, 321, 487, 836, 1257
HapII CCGG 5 cut(s) 363, 462, 480, 1014, 1037
HhaI GCGC 2 cut(s) 562, 1093
Hin1II CATG 5 cut(s) 78, 86, 294, 706, 1024
Hin6I GCGC 2 cut(s) 560, 1091
HinP1I GCGC 2 cut(s) 560, 1091
HincII GTYRAC 1 cut(s) 709
HindII GTYRAC 1 cut(s) 709
HindIII AAGCTT 3 cut(s) 774, 827, 986
HinfI GANTC 4 cut(s) 22, 155, 699, 960
HpaII CCGG 5 cut(s) 363, 462, 480, 1014, 1037
HphI GGTGA 1 cut(s) 1132
Hpy166II GTNNAC 2 cut(s) 590, 709
Hpy188I TCNGA 2 cut(s) 347, 764
Hpy188III TCNNGA 8 cut(s) 90, 128, 181, 250, 355, 611, 732, 1194
Hpy8I GTNNAC 2 cut(s) 590, 709
Hpy99I CGWCG 1 cut(s) 713
HpyAV CCTTC 2 cut(s) 498, 516
HpyCH4III ACNGT 4 cut(s) 7, 713, 1175, 1210
HpyCH4V TGCA 8 cut(s) 13, 86, 290, 451, 1031, 1133, 1157, 1247
HpyF10VI GCNNNNNNNGC 4 cut(s) 287, 1007, 1037, 1154
HpyF3I CTNAG 2 cut(s) 873, 1181
Hsp92II CATG 5 cut(s) 78, 86, 294, 706, 1024
HspAI GCGC 2 cut(s) 560, 1091
KroI GCCGGC 1 cut(s) 1013
KroNI GCCGGC 1 cut(s) 1015
Kzo9I GATC 3 cut(s) 130, 274, 1235
Lsp1109I GCAGC 4 cut(s) 586, 1022, 1077, 1259
LweI GCATC 3 cut(s) 95, 438, 1285
MaeI CTAG 3 cut(s) 90, 603, 611
MaeIII GTNAC 5 cut(s) 55, 77, 213, 293, 1210
MalI GATC 3 cut(s) 132, 276, 1237
MboI GATC 3 cut(s) 130, 274, 1235
MboII GAAGA 3 cut(s) 689, 808, 1253
MhlI GDGCHC 2 cut(s) 232, 1201
MlsI TGGCCA 1 cut(s) 321
MluNI TGGCCA 1 cut(s) 321
MlyI GAGTC 2 cut(s) 31, 149
Mox20I TGGCCA 1 cut(s) 321
Mph1103I ATGCAT 1 cut(s) 88
MroNI GCCGGC 1 cut(s) 1013
MscI TGGCCA 1 cut(s) 321
MseI TTAA 6 cut(s) 111, 237, 684, 990, 1119, 1306
Msp20I TGGCCA 1 cut(s) 321
MspI CCGG 5 cut(s) 363, 462, 480, 1014, 1037
MspR9I CCNGG 3 cut(s) 364, 463, 789
Mva1269I GAATGC 1 cut(s) 562
MvaI CCWGG 1 cut(s) 789
MwoI GCNNNNNNNGC 4 cut(s) 287, 1007, 1037, 1154
NaeI GCCGGC 1 cut(s) 1015
NciI CCSGG 2 cut(s) 364, 463
NdeI CATATG 1 cut(s) 551
NdeII GATC 3 cut(s) 130, 274, 1235
NgoMIV GCCGGC 1 cut(s) 1013
NlaIII CATG 5 cut(s) 78, 86, 294, 706, 1024
NlaIV GGNNCC 4 cut(s) 230, 231, 244, 1126
NsbI TGCGCA 1 cut(s) 561
NsiI ATGCAT 1 cut(s) 88
NspI RCATGY 2 cut(s) 78, 294
PaeR7I CTCGAG 1 cut(s) 1194
PciI ACATGT 1 cut(s) 74
PctI GAATGC 1 cut(s) 562
PdiI GCCGGC 1 cut(s) 1015
PfeI GAWTC 2 cut(s) 699, 960
PinAI ACCGGT 1 cut(s) 479
PkrI GCNGC 4 cut(s) 601, 1012, 1067, 1249
PleI GAGTC 2 cut(s) 30, 149
PpsI GAGTC 2 cut(s) 30, 149
PscI ACATGT 1 cut(s) 74
PshBI ATTAAT 1 cut(s) 1119
Psp6I CCWGG 1 cut(s) 787
PspEI GGTNACC 1 cut(s) 1210
PspGI CCWGG 1 cut(s) 787
PspN4I GGNNCC 4 cut(s) 230, 231, 244, 1126
PspOMI GGGCCC 1 cut(s) 228
PspPI GGNCC 5 cut(s) 228, 229, 340, 1124, 1256
PstNI CAGNNNCTG 2 cut(s) 668, 1154
RsaI GTAC 3 cut(s) 666, 851, 1231
RsaNI GTAC 3 cut(s) 665, 850, 1230
SalI GTCGAC 1 cut(s) 707
SaqAI TTAA 6 cut(s) 111, 237, 684, 990, 1119, 1306
SatI GCNGC 4 cut(s) 600, 1011, 1066, 1248
Sau3AI GATC 3 cut(s) 130, 274, 1235
Sau96I GGNCC 5 cut(s) 228, 229, 340, 1124, 1256
SchI GAGTC 2 cut(s) 31, 149
ScrFI CCNGG 3 cut(s) 364, 463, 789
SduI GDGCHC 2 cut(s) 232, 1201
SfaNI GCATC 3 cut(s) 95, 438, 1285
Sfr274I CTCGAG 1 cut(s) 1194
SinI GGWCC 2 cut(s) 340, 1124
SlaI CTCGAG 1 cut(s) 1194
SmlI CTYRAG 2 cut(s) 179, 1194
SmoI CTYRAG 2 cut(s) 179, 1194
SsiI CCGC 2 cut(s) 1146, 1298
SspI AATATT 2 cut(s) 421, 1087
SspMI CTAG 3 cut(s) 90, 603, 611
StyD4I CCNGG 3 cut(s) 362, 461, 787
StyI CCWWGG 1 cut(s) 1162
TaaI ACNGT 4 cut(s) 7, 713, 1175, 1210
TaqI TCGA 5 cut(s) 257, 708, 936, 1054, 1195
TatI WGTACW 1 cut(s) 849
TfiI GAWTC 2 cut(s) 699, 960
Tru1I TTAA 6 cut(s) 111, 237, 684, 990, 1119, 1306
Tru9I TTAA 6 cut(s) 111, 237, 684, 990, 1119, 1306
TscAI CASTG 1 cut(s) 1206
TseI GCWGC 4 cut(s) 599, 1010, 1065, 1247
TspDTI ATGAA 5 cut(s) 52, 690, 691, 704, 1009
TspRI CASTG 1 cut(s) 1206
VpaK11BI GGWCC 2 cut(s) 340, 1124
VspI ATTAAT 1 cut(s) 1119
XapI RAATTY 1 cut(s) 1189
XbaI TCTAGA 2 cut(s) 89, 610
XceI RCATGY 2 cut(s) 78, 294
XcmI CCANNNNNNNNNTGG 1 cut(s) 143
XhoI CTCGAG 1 cut(s) 1194
XmiI GTMKAC 1 cut(s) 708
XspI CTAG 3 cut(s) 90, 603, 611
Zsp2I ATGCAT 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.